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Volumn 9, Issue 1, 2014, Pages

Deducing hybrid performance from parental metabolic profiles of young primary roots of maize by using a multivariate diallel approach

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMASS; DIALLEL ANALYSIS; HETEROSIS; HYBRID; MAIZE; METABOLITE; NONHUMAN; PLANT BREEDING; PLANT GROWTH; PLANT ROOT; PLANT SEED; PLANT YIELD;

EID: 84896908852     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0085435     Document Type: Article
Times cited : (20)

References (41)
  • 1
    • 39449096001 scopus 로고    scopus 로고
    • Genetic progress in yield of united states maize (zea mays l.)
    • Duvick DN (2005) Genetic Progress In Yield Of United States Maize (Zea mays L.). Maydica 50: 193-202.
    • (2005) Maydica , vol.50 , pp. 193-202
    • Duvick, D.N.1
  • 2
    • 0002866524 scopus 로고
    • Duplicate genes for capsule form in bursa bursa-pastoris
    • Shull G (1914) Duplicate Genes for Capsule Form in Bursa bursa-pastoris. Z Indukt Abstamm Vererbungsl 12: 97-149.
    • (1914) Z Indukt Abstamm Vererbungsl , vol.12 , pp. 97-149
    • Shull, G.1
  • 3
    • 0000714053 scopus 로고
    • Comparison of different methods of identifying inbreds useful for improving elite maize hybrids
    • Zanoni U, Dudley JW (1989) Comparison of different methods of identifying inbreds useful for improving elite maize hybrids. Crop Sci 29: 577-582.
    • (1989) Crop Sci , vol.29 , pp. 577-582
    • Zanoni, U.1    Dudley, J.W.2
  • 5
    • 8244224748 scopus 로고
    • Temperature-dependent heterosis in maize
    • McWilliam JR, Griffing B (1965) Temperature-dependent heterosis in maize. Austral J Biol Sci 18: 569-583.
    • (1965) Austral J Biol Sci , vol.18 , pp. 569-583
    • McWilliam, J.R.1    Griffing, B.2
  • 6
    • 75849130121 scopus 로고    scopus 로고
    • Prediction of hybrid performance in maize using molecular markers and joint analyses of hybrids and parental inbreds
    • Schrag TA, Mohring J, Melchinger AE, Kusterer B, Dhillon BS, et al. (2010) Prediction of hybrid performance in maize using molecular markers and joint analyses of hybrids and parental inbreds. Theor Appl Genet 120: 451-461.
    • (2010) Theor Appl Genet , vol.120 , pp. 451-461
    • Schrag, T.A.1    Mohring, J.2    Melchinger, A.E.3    Kusterer, B.4    Dhillon, B.S.5
  • 7
    • 84857405495 scopus 로고    scopus 로고
    • A general bayesian approach to analyzing diallel crosses of inbred strains
    • Lenarcic AB, Svenson KL, Churchill GA, Valdar W (2012) A general Bayesian approach to analyzing diallel crosses of inbred strains. Genetics 190: 413-435.
    • (2012) Genetics , vol.190 , pp. 413-435
    • Lenarcic, A.B.1    Svenson, K.L.2    Churchill, G.A.3    Valdar, W.4
  • 9
    • 0031734333 scopus 로고    scopus 로고
    • Prediction of genetic value for coffee production in Coffea arabica from a half-diallel with lines and hybrids
    • Cilas C, Bouharmont P, Boccara M, Eskes AB, Baradat P (1998) Prediction of genetic value for coffee production in Coffea arabica from a half-diallel with lines and hybrids. Euphytica 104: 49-59. (Pubitemid 28485951)
    • (1998) Euphytica , vol.104 , Issue.1 , pp. 49-59
    • Cilas, C.1    Bouharmont, P.2    Boccara, M.3    Eskes, A.B.4    Baradat, Ph.5
  • 10
    • 0030037540 scopus 로고    scopus 로고
    • Best linear unbiased prediction of maize single-cross performance
    • Bernardo R (1996) Best Linear Unbiased Prediction of Maize Single-Cross Performance. Crop Sci 36: 50-56.
    • (1996) Crop Sci , vol.36 , pp. 50-56
    • Bernardo, R.1
  • 11
    • 0033791949 scopus 로고    scopus 로고
    • Chromosomal regions involved in hybrid performance and heterosis: Their aflp(r)-based identification and practical use in prediction models
    • Vuylsteke M, Kuiper M, Stam P (2000) Chromosomal regions involved in hybrid performance and heterosis: their AFLP(R)-based identification and practical use in prediction models. Heredity 85: 208-218.
    • (2000) Heredity , vol.85 , pp. 208-218
    • Vuylsteke, M.1    Kuiper, M.2    Stam, P.3
  • 12
    • 35248862454 scopus 로고    scopus 로고
    • Support vector machine regression for the prediction of maize hybrid performance
    • DOI 10.1007/s00122-007-0627-9
    • Maenhout S, De Baets B, Haesaert G, Van Bockstaele E (2007) Support vector machine regression for the prediction of maize hybrid performance. Theor Appl Genet 115: 1003-1013. (Pubitemid 47561706)
    • (2007) Theoretical and Applied Genetics , vol.115 , Issue.7 , pp. 1003-1013
    • Maenhout, S.1    De Baets, B.2    Haesaert, G.3    Van Bockstaele, E.4
  • 13
    • 84862277013 scopus 로고    scopus 로고
    • Partial least squares regression, support vector machine regression, and transcriptomebased distances for prediction of maize hybrid performance with gene expression data
    • Fu J, Falke KC, Thiemann A, Schrag TA, Melchinger AE, et al. (2012) Partial least squares regression, support vector machine regression, and transcriptomebased distances for prediction of maize hybrid performance with gene expression data. Theor Appl Genet 124: 825-833.
    • (2012) Theor Appl Genet , vol.124 , pp. 825-833
    • Fu, J.1    Falke, K.C.2    Thiemann, A.3    Schrag, T.A.4    Melchinger, A.E.5
  • 14
    • 84859592582 scopus 로고    scopus 로고
    • A bayesian antedependence model for whole genome prediction
    • Yang W, Tempelman RJ (2012) A Bayesian antedependence model for whole genome prediction. Genetics 190: 1491-1501.
    • (2012) Genetics , vol.190 , pp. 1491-1501
    • Yang, W.1    Tempelman, R.J.2
  • 15
    • 76249098683 scopus 로고    scopus 로고
    • Marker-based prediction of hybrid performance in maize single-crosses involving doubled haploids
    • Schrag TA, Frisch M, Dhillon BS, Melchinger AE (2009) Marker-based prediction of hybrid performance in maize single-crosses involving doubled haploids. Maydica 54: 353-362.
    • (2009) Maydica , vol.54 , pp. 353-362
    • Schrag, T.A.1    Frisch, M.2    Dhillon, B.S.3    Melchinger, A.E.4
  • 16
    • 84870241365 scopus 로고    scopus 로고
    • Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects
    • Technow F, Riedelsheimer C, Schrag TA, Melchinger AE (2012) Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects. Theor Appl Genet 125: 1181-1194.
    • (2012) Theor Appl Genet , vol.125 , pp. 1181-1194
    • Technow, F.1    Riedelsheimer, C.2    Schrag, T.A.3    Melchinger, A.E.4
  • 17
    • 84879412664 scopus 로고    scopus 로고
    • Genomic and epigenetic insights into the molecular bases of heterosis
    • Chen ZJ (2013) Genomic and epigenetic insights into the molecular bases of heterosis. Nat Rev Genet 14, 471-482.
    • (2013) Nat Rev Genet , vol.14 , pp. 471-482
    • Chen, Z.J.1
  • 18
    • 75849163891 scopus 로고    scopus 로고
    • Transcriptomebased distance measures for grouping of germplasm and prediction of hybrid performance in maize
    • FrischM, Thiemann A, Fu J, Schrag TA, Scholten S, et al. (2010) Transcriptomebased distance measures for grouping of germplasm and prediction of hybrid performance in maize. Theor Appl Genet 120: 441-450.
    • (2010) Theor Appl Genet , vol.120 , pp. 441-450
    • Frisch, M.1    Thiemann, A.2    Fu, J.3    Schrag, T.A.4    Scholten, S.5
  • 19
  • 20
    • 84930188735 scopus 로고    scopus 로고
    • Manifestation of heterosis during early maize (Zea mays L.) root development
    • DOI 10.1007/s00122-005-0139-4
    • Hoecker N, Keller B, Piepho HP, Hochholdinger F (2006) Manifestation of heterosis during early maize (Zea mays L.) root development. Theor Appl Genet 112: 421-429. (Pubitemid 43081585)
    • (2006) Theoretical and Applied Genetics , vol.112 , Issue.3 , pp. 421-429
    • Hoecker, N.1    Keller, B.2    Piepho, H.-P.3    Hochholdinger, F.4
  • 21
    • 52049125924 scopus 로고    scopus 로고
    • Comparison of maize (zea mays l.) f1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of non-additive gene expression and conserved expression trends
    • Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, et al. (2008) Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of non-additive gene expression and conserved expression trends. Genetics 179: 1275-1283.
    • (2008) Genetics , vol.179 , pp. 1275-1283
    • Hoecker, N.1    Keller, B.2    Muthreich, N.3    Chollet, D.4    Descombes, P.5
  • 22
    • 75849125815 scopus 로고    scopus 로고
    • Molecular dissection of heterosis manifestation during early maize root development
    • Paschold A, Marcon C, Hoecker N, Hochholdinger F (2010): Molecular dissection of heterosis manifestation during early maize root development. Theor Appl Genet 120: 441-450.
    • (2010) Theor Appl Genet , vol.120 , pp. 441-450
    • Paschold, A.1    Marcon, C.2    Hoecker, N.3    Hochholdinger, F.4
  • 23
    • 62349095516 scopus 로고    scopus 로고
    • Genetic and genomic dissection of maize root development and architecture
    • Hochholdinger F, Tuberosa R (2009) Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol 12: 172-177.
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 172-177
    • Hochholdinger, F.1    Tuberosa, R.2
  • 24
    • 80054084242 scopus 로고    scopus 로고
    • Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns
    • Lisec J, Romisch-Margl L, Nikoloski Z, Piepho HP, Giavalisco P, et al. (2011) Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. Plant J 68: 326-336.
    • (2011) Plant J , vol.68 , pp. 326-336
    • Lisec, J.1    Romisch-Margl, L.2    Nikoloski, Z.3    Piepho, H.P.4    Giavalisco, P.5
  • 25
    • 65349156927 scopus 로고    scopus 로고
    • Improved heterosis prediction by combining information on dna-and metabolic markers
    • Gartner T, Steinfath M, Andorf S, Lisec J, Meyer RC, et al. (2009) Improved Heterosis Prediction by Combining Information on DNA-and Metabolic Markers. PLoS ONE 4: e5220.
    • (2009) PLoS ONE , vol.4
    • Gartner, T.1    Steinfath, M.2    Andorf, S.3    Lisec, J.4    Meyer, R.C.5
  • 26
    • 75849125160 scopus 로고    scopus 로고
    • Prediction of hybrid biomass in arabidopsis thaliana by selected parental snp and metabolic markers
    • Steinfath M, Gartner T, Lisec J, Meyer RC, Altmann T, et al. (2010) Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers. Theor Appl Genet 120: 239-247.
    • (2010) Theor Appl Genet , vol.120 , pp. 239-247
    • Steinfath, M.1    Gartner, T.2    Lisec, J.3    Meyer, R.C.4    Altmann, T.5
  • 27
    • 75149136156 scopus 로고    scopus 로고
    • Targetsearch -A bioconductor package for the efficient preprocessing of gcms metabolite profiling data
    • Cuadros-Inostroza A, Caldana C, Redestig H, Kusano M, Lisec J, et al. (2009) TargetSearch -a Bioconductor package for the efficient preprocessing of GCMS metabolite profiling data BMC Bioinform 10: 428.
    • (2009) BMC Bioinform , vol.10 , pp. 428
    • Cuadros-Inostroza, A.1    Caldana, C.2    Redestig, H.3    Kusano, M.4    Lisec, J.5
  • 28
    • 34248580879 scopus 로고    scopus 로고
    • Gas chromatography mass spectrometry-based metabolite profiling in plants
    • Lisec J, Schauer N, Kopka J, Willmitzer L, Fernie AR (2006) Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc 1: 387-396.
    • (2006) Nat Protoc , vol.1 , pp. 387-396
    • Lisec, J.1    Schauer, N.2    Kopka, J.3    Willmitzer, L.4    Fernie, A.R.5
  • 29
    • 80054061389 scopus 로고    scopus 로고
    • Elemental formula annotation of polar-and lipophilic-metabolites using (13) c, (15) n and (34) s isotope-labelling in combination with high-resolution mass spectrometry
    • Giavalisco P, Li Y, Matthes A, Eckhardt A, Hubberten HM, et al. (2011) Elemental formula annotation of polar-and lipophilic-metabolites using (13) C, (15) N and (34) S isotope-labelling in combination with high-resolution mass spectrometry. Plant J 68: 364-376.
    • (2011) Plant J , vol.68 , pp. 364-376
    • Giavalisco, P.1    Li, Y.2    Matthes, A.3    Eckhardt, A.4    Hubberten, H.M.5
  • 31
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 34
    • 20444448822 scopus 로고    scopus 로고
    • Pls dimension reduction for classification with microarray data
    • Boulesteix AL (2004) PLS dimension reduction for classification with microarray data. Stat Appl Genet Mol Biol 3: 33.
    • (2004) Stat Appl Genet Mol Biol , vol.3 , pp. 33
    • Boulesteix, A.L.1
  • 35
    • 76649101119 scopus 로고    scopus 로고
    • Optimal classifier selection and negative bias in error rate estimation: An empirical study on high-dimensional prediction
    • Boulesteix AL, Strobl C (2009) Optimal classifier selection and negative bias in error rate estimation: an empirical study on high-dimensional prediction. BMC Med Res Methodol 9: 85.
    • (2009) BMC Med Res Methodol , vol.9 , pp. 85
    • Boulesteix, A.L.1    Strobl, C.2
  • 36
    • 60849119837 scopus 로고    scopus 로고
    • Cma: A comprehensive bioconductor package for supervised classification with high dimensional data
    • Slawski M, Daumer M, Boulesteix A-L (2008) CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. BMC Bioinformatics 9: 439.
    • (2008) BMC Bioinformatics , vol.9 , pp. 439
    • Slawski, M.1    Daumer, M.2    Boulesteix, A.-L.3
  • 38
    • 77957766623 scopus 로고    scopus 로고
    • Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of arabidopsis accessions
    • Sulpice R, Trenkamp S, Steinfath M, Usadel B, Gibon Y, et al. (2010) Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell 22: 2872-2893.
    • (2010) Plant Cell , vol.22 , pp. 2872-2893
    • Sulpice, R.1    Trenkamp, S.2    Steinfath, M.3    Usadel, B.4    Gibon, Y.5
  • 40
  • 41
    • 0141872967 scopus 로고    scopus 로고
    • Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm
    • DOI 10.1046/j.1365-313X.2003.01852.x
    • Guo M, Rupe MA, Danilevskaya ON, Yang X, Hu Z (2003) Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. Plant J 36: 30-44. (Pubitemid 37231655)
    • (2003) Plant Journal , vol.36 , Issue.1 , pp. 30-44
    • Guo, M.1    Rupe, M.A.2    Danilevskaya, O.N.3    Yang, X.4    Hu, Z.5


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