-
1
-
-
67650666437
-
Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations
-
Abasht, B., E. Sandford, J. Arango, P. Settar, J. E. Fulton et al., 2009 Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations. BMC Genomics 10: S2.
-
(2009)
BMC Genomics
, vol.10
-
-
Abasht, B.1
Sandford, E.2
Arango, J.3
Settar, P.4
Fulton, J.E.5
-
2
-
-
77954514569
-
Hierarchial Bayesian modeling of random and residual variance-covariance matrices in mixed effects models
-
Bello, N. M., J. P. Steibel, and R. J. Tempelman, 2010 Hierarchial Bayesian modeling of random and residual variance-covariance matrices in mixed effects models. Biom. J. 52: 297-313.
-
(2010)
Biom. J
, vol.52
, pp. 297-313
-
-
Bello, N.M.1
Steibel, J.P.2
Tempelman, R.J.3
-
3
-
-
77954294525
-
Characteristics of linkage disequilibrium in North American Holsteins
-
Bohmanova, J. M. Sargolzaei, and F. S. Schenkel, 2010 Characteristics of linkage disequilibrium in North American Holsteins. BMC Genomics 11: 421.
-
(2010)
BMC Genomics
, vol.11
, pp. 421
-
-
Bohmanova, J.1
Sargolzaei, M.2
Schenkel, F.S.3
-
4
-
-
36849052387
-
Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM
-
Calus, M. P. L., and R. F. Veerkamp, 2007 Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. J. Anim. Breed. Genet. 124: 362-368.
-
(2007)
J. Anim. Breed. Genet
, vol.124
, pp. 362-368
-
-
Calus, M.P.L.1
Veerkamp, R.F.2
-
5
-
-
36849093104
-
Accuracy of genomic selection using different methods to define haplotypes
-
Calus, M. P. L., T. H. E. Meuwissen, A. P. W. de Roos, and R. F. Veerkamp, 2008 Accuracy of genomic selection using different methods to define haplotypes. Genetics 178: 553-561.
-
(2008)
Genetics
, vol.178
, pp. 553-561
-
-
Calus, M.P.L.1
Meuwissen, T.H.E.2
de Roos, A.P.W.3
Veerkamp, R.F.4
-
6
-
-
77952749326
-
Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance
-
Coster, A., J. W. M. Bastiaansen, M. P. L. Calus, J. A. M. van Arendonk, and H. Bovenhuis, 2010 Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance. Genet. Sel. Evol. 42: 9.
-
(2010)
Genet. Sel. Evol
, vol.42
, pp. 9
-
-
Coster, A.1
Bastiaansen, J.W.M.2
Calus, M.P.L.3
van Arendonk, J.A.M.4
Bovenhuis, H.5
-
7
-
-
77958581195
-
The impact of genetic architecture on genomewide evaluation methods
-
Daetwyler, H. D., R. Pong-Wong, B. Villanueva, and J. A. Woolliams, 2010 The impact of genetic architecture on genomewide evaluation methods. Genetics 185: 1021-1031.
-
(2010)
Genetics
, vol.185
, pp. 1021-1031
-
-
Daetwyler, H.D.1
Pong-Wong, R.2
Villanueva, B.3
Woolliams, J.A.4
-
8
-
-
0038600714
-
Bayesian analysis of covariance matrices and dynamic models for longitudinal data
-
Daniels, M. J., and M. Pourahmadi, 2002 Bayesian analysis of covariance matrices and dynamic models for longitudinal data. Biometrika 89: 553-566.
-
(2002)
Biometrika
, vol.89
, pp. 553-566
-
-
Daniels, M.J.1
Pourahmadi, M.2
-
9
-
-
67849130524
-
Predicting quantitative traits with regression models for dense molecular markers and pedigree
-
de los Campos, G., H. Naya, D. Gianola, J. Crossa, A. Legarra et al., 2009 Predicting quantitative traits with regression models for dense molecular markers and pedigree. Genetics 182: 375-385.
-
(2009)
Genetics
, vol.182
, pp. 375-385
-
-
de los Campos, G.1
Naya, H.2
Gianola, D.3
Crossa, J.4
Legarra, A.5
-
10
-
-
78649317608
-
Predicting genetic predisposition in humans: The promise of whole-genome markers
-
de los Campos, G., D. Gianola, and D. B. Allison, 2010 Predicting genetic predisposition in humans: the promise of whole-genome markers. Nat. Rev. Genet. 11: 880-886.
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 880-886
-
-
de los Campos, G.1
Gianola, D.2
Allison, D.B.3
-
11
-
-
52049096371
-
Linkage disequilibrium and persistence of phase in Holstein, Friesian, Jersey and Angus cattle
-
de Roos, A. P. W., B. J. Hayes, R. Spelman, and M. E. Goddard, 2008 Linkage disequilibrium and persistence of phase in Holstein, Friesian, Jersey and Angus cattle. Genetics 179: 1503-1512.
-
(2008)
Genetics
, vol.179
, pp. 1503-1512
-
-
de Roos, A.P.W.1
Hayes, B.J.2
Spelman, R.3
Goddard, M.E.4
-
12
-
-
33847011041
-
Characterizing linkage disequilibrium in pig populations
-
Du, F. X., A. C. Clutter, and M. M. Lohuis, 2007 Characterizing linkage disequilibrium in pig populations. Int. J. Biol. Sci. 3: 166-178.
-
(2007)
Int. J. Biol. Sci
, vol.3
, pp. 166-178
-
-
Du, F.X.1
Clutter, A.C.2
Lohuis, M.M.3
-
13
-
-
84867086419
-
Prior distributions for variance parameters in hierarchical models
-
Gelman, A., 2006 Prior distributions for variance parameters in hierarchical models. Bayesian Anal. 1: 515-533.
-
(2006)
Bayesian Anal
, vol.1
, pp. 515-533
-
-
Gelman, A.1
-
14
-
-
0037274690
-
Onmarker-assisted prediction of genetic value: Beyond the ridge
-
Gianola, D. M. Perez-Enciso, and M. A. Toro, 2003 Onmarker-assisted prediction of genetic value: beyond the ridge. Genetics 163: 347-365.
-
(2003)
Genetics
, vol.163
, pp. 347-365
-
-
Gianola, D.1
Perez-Enciso, M.2
Toro, M.A.3
-
15
-
-
70350136780
-
Additive genetic variability and the Bayesian alphabet
-
Gianola, D., G. de los Campos, W. G. Hill, E. Manfredi, and R. Fernando, 2009 Additive genetic variability and the Bayesian alphabet. Genetics 183: 347-363.
-
(2009)
Genetics
, vol.183
, pp. 347-363
-
-
Gianola, D.1
de los Campos, G.2
Hill, W.G.3
Manfredi, E.4
Fernando, R.5
-
16
-
-
77957357792
-
A nonparametric mixture model for genome-enabled prediction of genetic value for a quantitative trait
-
Gianola, D., X.-L. Wu, E. Manfredi, and H. Simianer, 2010 A nonparametric mixture model for genome-enabled prediction of genetic value for a quantitative trait. Genetica 138: 959-977.
-
(2010)
Genetica
, vol.138
, pp. 959-977
-
-
Gianola, D.1
Wu, X.-L.2
Manfredi, E.3
Simianer, H.4
-
17
-
-
66249122107
-
Mapping genes for complex traits in domestic animals and their use in breeding programmes
-
Goddard, M. E., and B. J. Hayes, 2009 Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat. Rev. Genet. 10: 381-391.
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 381-391
-
-
Goddard, M.E.1
Hayes, B.J.2
-
18
-
-
77955133892
-
Estimating effects and making predictions from genomewide marker data
-
Goddard, M. E., N. R. Wray, K. Verbyla, and P.M. Visscher, 2009 Estimating effects and making predictions from genomewide marker data. Stat. Sci. 24: 517-529.
-
(2009)
Stat. Sci
, vol.24
, pp. 517-529
-
-
Goddard, M.E.1
Wray, N.R.2
Verbyla, K.3
Visscher, P.M.4
-
19
-
-
1942453327
-
Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci
-
Grapes, L., J. C. M. Dekkers, M. F. Rothschild, and R. L. Fernando, 2004 Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci. Genetics 166: 1561-1570.
-
(2004)
Genetics
, vol.166
, pp. 1561-1570
-
-
Grapes, L.1
Dekkers, J.C.M.2
Rothschild, M.F.3
Fernando, R.L.4
-
20
-
-
79956199958
-
Extension of the Bayesian alphabet for genomic selection
-
Habier, D., R. L. Fernando, K. Kizilkaya, and D. J. Garrick, 2011 Extension of the Bayesian alphabet for genomic selection. BMC Bioinformatics 12: 186.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 186
-
-
Habier, D.1
Fernando, R.L.2
Kizilkaya, K.3
Garrick, D.J.4
-
21
-
-
59349098163
-
Invited review: Genomic selection in dairy cattle: Progress and challenges
-
Hayes, B. J., P. J. Bowman, A.J. Chamberlain, and M. E. Goddard, 2009 Invited review: genomic selection in dairy cattle: progress and challenges. J. Dairy Sci. 92: 433-443.
-
(2009)
J. Dairy Sci
, vol.92
, pp. 433-443
-
-
Hayes, B.J.1
Bowman, P.J.2
Chamberlain, A.J.3
Goddard, M.E.4
-
22
-
-
0017288665
-
A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values
-
Henderson, C. R., 1976 A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values. Biometrics 32: 69-83.
-
(1976)
Biometrics
, vol.32
, pp. 69-83
-
-
Henderson, C.R.1
-
24
-
-
84859586803
-
Simulated data for genomic selection and GWAS using a combination of coalescent and gene drop methods
-
Hickey, J. M., and G. Gorjanc, 2012 Simulated data for genomic selection and GWAS using a combination of coalescent and gene drop methods. G3: Genes, Genomes, Genetics 2: 425-427.
-
(2012)
G3: Genes, Genomes, Genetics
, vol.2
, pp. 425-427
-
-
Hickey, J.M.1
Gorjanc, G.2
-
25
-
-
40149087235
-
Data and theory point to mainly additive genetic variance for complex traits
-
Hill, W. G., M. E. Goddard, and P. M. Visscher, 2008 Data and theory point to mainly additive genetic variance for complex traits. PLoS Genet. 4: e1000008.
-
(2008)
PLoS Genet
, vol.4
-
-
Hill, W.G.1
Goddard, M.E.2
Visscher, P.M.3
-
26
-
-
48249096806
-
Simultaneous analysis of all snps in genome-wide and re-sequencing association studies
-
Hoggart, C. J., J. C. Whittaker, M. De Iorio, and D. J. Balding, 2008 Simultaneous analysis of all snps in genome-wide and re-sequencing association studies. PLoS Genet. 4: e1000130.
-
(2008)
PLoS Genet
, vol.4
-
-
Hoggart, C.J.1
Whittaker, J.C.2
de Iorio, M.3
Balding, D.J.4
-
27
-
-
11444259077
-
A general approach to mixed effects modeling of residual variances in generalized linear mixed models
-
Kizilkaya, K., and R. J. Tempelman, 2005 A general approach to mixed effects modeling of residual variances in generalized linear mixed models. Genet. Sel. Evol. 37: 31-56.
-
(2005)
Genet. Sel. Evol
, vol.37
, pp. 31-56
-
-
Kizilkaya, K.1
Tempelman, R.J.2
-
28
-
-
55449114253
-
Predicting unobserved phenotypes for complex traits from whole-genome SNP data
-
Lee, S. H., J. H. van der Werf, B. J. Hayes, M. E. Goddard, and P. M. Visscher, 2008 Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet. 4: e1000231.
-
(2008)
PLoS Genet
, vol.4
-
-
Lee, S.H.1
van der Werf, J.H.2
Hayes, B.J.3
Goddard, M.E.4
Visscher, P.M.5
-
29
-
-
56049106368
-
Performance of genomic selection in mice
-
Legarra, A. C. Robert-Granie, E. Manfredi, and J.-M. Elsen, 2008 Performance of genomic selection in mice. Genetics 180: 611-618.
-
(2008)
Genetics
, vol.180
, pp. 611-618
-
-
Legarra, A.C.1
Robert-Granie, S.2
Manfredi, E.3
Elsen, J.-M.4
-
30
-
-
77349109776
-
A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis
-
Logsdon, B., G. Hoffman, and J. Mezey, 2010 A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis. BMC Bioinformatics 11: 58.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 58
-
-
Logsdon, B.1
Hoffman, G.2
Mezey, J.3
-
31
-
-
78651492289
-
-
Advances in Agronomy, Elsevier-Academic Press, San Diego
-
Lorenz, A. J., S. M. Chao, F. G. Asoro, E. L. Heffner, T. Hayashi et al., 2011 Genomic selection in plant breeding: knowledge and prospects, pp. 77-123 in Advances in Agronomy, vol. 110. Elsevier-Academic Press, San Diego.
-
(2011)
Genomic Selection In Plant Breeding: Knowledge and Prospects
, pp. 77-123
-
-
Lorenz, A.J.1
Chao, S.M.2
Asoro, F.G.3
Heffner, E.L.4
Hayashi, T.5
-
32
-
-
77955482663
-
Accurate prediction of genetic values for complex traits by whole-genome resequencing
-
Meuwissen, T., and M. Goddard, 2010 Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 185: 623-631.
-
(2010)
Genetics
, vol.185
, pp. 623-631
-
-
Meuwissen, T.1
Goddard, M.2
-
33
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen, T. H. E., B. J. Hayes, and M. E. Goddard, 2001 Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
34
-
-
69249230467
-
A review of Bayesian variable selection methods: What, how and which
-
O'Hara, R. B., and M. J. Sillanpaa, 2009 A review of Bayesian variable selection methods: what, how and which. Bayesian Anal. 4: 85-117.
-
(2009)
Bayesian Anal
, vol.4
, pp. 85-117
-
-
O'Hara, R.B.1
Sillanpaa, M.J.2
-
35
-
-
41149087694
-
CODA: Convergence diagnostics and output analysis for MCMC
-
Plummer, M., N. Best, K. Cowles, and K. Vines, 2006 CODA: convergence diagnostics and output analysis for MCMC. R News 6: 7-11.
-
(2006)
R News
, vol.6
, pp. 7-11
-
-
Plummer, M.1
Best, N.2
Cowles, K.3
Vines, K.4
-
36
-
-
77958045362
-
Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers
-
Shepherd, R. K., T. H. Meuwissen, and J. A. Woolliams, 2010 Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics 11: 529.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 529
-
-
Shepherd, R.K.1
Meuwissen, T.H.2
Woolliams, J.A.3
-
37
-
-
0003639537
-
-
Springer-Verlag, New York
-
Sorensen, D., and D. Gianola, 2002 Likelihood, Bayesian, and MCMC Methods in Quantitative Genetics, Springer-Verlag, New York.
-
(2002)
Likelihood, Bayesian, and MCMC Methods In Quantitative Genetics
-
-
Sorensen, D.1
Gianola, D.2
-
38
-
-
33746540478
-
Genome-wide genetic association of complex traits in heterogeneous stock mice
-
Valdar, W., L. C. Solberg, D. Gauguier, S. Burnett, P. Klenerman et al., 2006a Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38: 879-887.
-
(2006)
Nat. Genet
, vol.38
, pp. 879-887
-
-
Valdar, W.1
Solberg, L.C.2
Gauguier, D.3
Burnett, S.4
Klenerman, P.5
-
39
-
-
33749472024
-
Genetic and environmental effects on complex traits in mice
-
Valdar, W., L. C. Solberg, D. Gauguier, W. O. Cookson, J. N. P. Rawlins et al., 2006b Genetic and environmental effects on complex traits in mice. Genetics 174: 959-984.
-
(2006)
Genetics
, vol.174
, pp. 959-984
-
-
Valdar, W.1
Solberg, L.C.2
Gauguier, D.3
Cookson, W.O.4
Rawlins, J.N.P.5
-
40
-
-
55849133422
-
Efficient methods to compute genomic predictions
-
VanRaden, P. M., 2008 Efficient methods to compute genomic predictions. J. Dairy Sci. 91: 4414-4423.
-
(2008)
J. Dairy Sci
, vol.91
, pp. 4414-4423
-
-
Vanraden, P.M.1
-
41
-
-
58849086807
-
The importance of haplotype length and heritability using genomic selection in dairy cattle
-
Villumsen, T. M., L. Janss, and M. S. Lund, 2008 The importance of haplotype length and heritability using genomic selection in dairy cattle. J. Anim. Breed. Genet. 126: 3-13.
-
(2008)
J. Anim. Breed. Genet
, vol.126
, pp. 3-13
-
-
Villumsen, T.M.1
Janss, L.2
Lund, M.S.3
-
42
-
-
79956273022
-
The genomic evaluation system in the United States: Past, present, future
-
Wiggans, G. R., P. M. VanRaden, and T. A. Cooper, 2011 The genomic evaluation system in the United States: past, present, future. J. Dairy Sci. 94: 3202-3211.
-
(2011)
J. Dairy Sci
, vol.94
, pp. 3202-3211
-
-
Wiggans, G.R.1
Vanraden, P.M.2
Cooper, T.A.3
-
43
-
-
49849103360
-
Bayesian Lasso for quantitative trait loci mapping
-
Yi, N., and S. Xu, 2008 Bayesian Lasso for quantitative trait loci mapping. Genetics 179: 1045-1055.
-
(2008)
Genetics
, vol.179
, pp. 1045-1055
-
-
Yi, N.1
Xu, S.2
|