Replica-Exchange Molecular Dynamics Simulations of Amyloid Precursor Protein Dimer in Membrane

Quantum Bio-informatics III: From Quantum Information to Bio-informatics

Volumn , Issue , 2010, Pages 361-368

  Ashita, Naoyuki Miy ^a   Sugita, Yuh ^a  

^a RIKEN   (Japan)

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EID: 84896767610     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1142/9789814304061_0030     Document Type: Chapter

References (21)

1. C. Haass and D. I. Selkoe, Nature Reviews Molecular Cell Biology 8, 101 (2007).
2. A. T. Petkova, W-M. Yau and R. Tycko, Biochemistry 45, 498 (2006).
3. R. Nelson and D. Eisenberg, Curro Opin. Struc. Bioi. 16, 260 (2006).
4. B. Tarus, I. E. Straub and D. Thirumalai, J. Am. Chem. Soc. 128, 16159 (2006).
5. B. Tarus, J. E. Straub and D. Thirumalai, J. Mol. Bioi. 345, 1141 (2005).
6. F. Massi, J. W. Peng, J. P. Lee and J. E. Straub, Biophys. J. 80, 31 (2001).
7. N. Miyashita, J. E. Straub, D. Thirumalai and Y. Sugita, I. Am. Chem. Soc.131, 3438 (2009).
8. N. Miyashita, J. E. Straub and D. Thirumalai, Y. Am. Chem. Soc. in press.
9. R. A. MacKenzie, J. H. Prestegard and D. M. Engelman, Science 276, 131 (1997).
10. A. Senes, I. Ubarretxena-Belandia and D. M. Engelman, Proc. Natl. Acad. Sci. USA 98, 9056 (2001).
11. P. Kienlen-Campard, B. Tasiaux, I. V. Hees, M. Li, S. Huysseune, T. Sato, J. Z. Fei, S. Aimoto, P. J. Courtoy, S. O. Smith, S.N. Constantinescu and J. N. Octave, I. Bioi. Chem. 283, 7733 (2008).
12. T. Sato, T. Tang, G. Reubins, I.Z. Fei, T. Fujimoto, P. Kienlen-Campard, S. N. Constantinescu, J. N. Octave, S. Aimoto and S. O. Smith, Proc. Natl. Acad. Sci. USA 106, 1421 (2009).
13. Y. Sugita and Y. Okamoto, Chem. Phys. Lett. 314, 141 (1999).
14. M. Feig, I. Karanicolas and C. L. Brooks III, J. Mol. Graphics and Modeling 22, 377 (2004).
15. A. D. MacKerel Jr., D. Bashford, M. Bel!ott., R. L. Dunbrack, J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. JosephMcCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Ngyuen, B. Prodhom, W. E. Reiher III, B. Roux, M. Schelenkrich, I. C. Smith, R. Stote, J. E. Straub, M. Watanabe, J. Wi6kiewicz-Kuczera, D. Yin and M. Karplus, J. Phys. Chem. B 102, 3586 (1998).
16. T. Lazaridis and M. Karplus, Proteins 35, 133 (1999).
17. T. Lazaridis, Proteins 52, 176 (2003).
18. M. Mottamal, I. Zhang and T. Lazaridis, Proteins 62, 996 (2006).
19. W. Humphrey, A. Dalke and K. Schulten, L. Mol. Graphics and Modeling 14, 33 (1996).
20. A. Kitao and N. Go, Curro Opin. Struc. Bioi. 9, 164 (1999).
21. A. E. Garcia, Phys. Rev. Lett. 68, 2696 (1992).