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Volumn 12, Issue 2, 2014, Pages 899-925

Bioprospecting from marine sediments of New Brunswick, Canada: Exploring the relationship between total bacterial diversity and actinobacteria diversity

Author keywords

Actinomycetes; Marine bacteria; Pyrosequencing; Streptomyces

Indexed keywords

DNA 16S; RNA 16S;

EID: 84896740033     PISSN: None     EISSN: 16603397     Source Type: Journal    
DOI: 10.3390/md12020899     Document Type: Article
Times cited : (39)

References (95)
  • 1
    • 14544294545 scopus 로고    scopus 로고
    • Bioactive microbial metabolites
    • Bérdy, J. Bioactive microbial metabolites. J. Antibiot. (Tokyo) 2005, 58, 1-26.
    • (2005) J. Antibiot. (Tokyo) , vol.58 , pp. 1-26
    • Bérdy, J.1
  • 3
    • 69549111337 scopus 로고    scopus 로고
    • Antibiotics for emerging pathogens
    • Fischbach, M.A.; Walsh, C.T. Antibiotics for emerging pathogens. Science 2009, 325, 1089-1093.
    • (2009) Science , vol.325 , pp. 1089-1093
    • Fischbach, M.A.1    Walsh, C.T.2
  • 4
    • 82255172414 scopus 로고    scopus 로고
    • Rediscovering natural products as a source of new drugs
    • Koehn, F.E.; Carter, G.T. Rediscovering natural products as a source of new drugs. Discov. Med. 2005, 5, 159-164.
    • (2005) Discov. Med. , vol.5 , pp. 159-164
    • Koehn, F.E.1    Carter, G.T.2
  • 5
    • 42149094007 scopus 로고    scopus 로고
    • Actinomycetes from sediments in the Trondheim Fjord, Norway: Diversity and biological activity
    • Bredholt, H.; Fjaervik, E.; Johnsen, G.; Zotchev, S.B. Actinomycetes from sediments in the Trondheim Fjord, Norway: Diversity and biological activity. Mar. Drugs 2008, 6, 12-24.
    • (2008) Mar. Drugs , vol.6 , pp. 12-24
    • Bredholt, H.1    Fjaervik, E.2    Johnsen, G.3    Zotchev, S.B.4
  • 6
    • 33744728757 scopus 로고    scopus 로고
    • Diversity of actinomycetes isolated from challenger deep sediment (10,898 M) from the Mariana Trench
    • Pathom-Aree, W.; Stach, J.E.M.; Ward, A.C.; Horikoshi, K.; Bull, A.T.; Goodfellow, M. Diversity of actinomycetes isolated from challenger deep sediment (10,898 M) from the Mariana Trench. Extremophiles 2006, 10, 181-189.
    • (2006) Extremophiles , vol.10 , pp. 181-189
    • Pathom-Aree, W.1    Stach, J.E.M.2    Ward, A.C.3    Horikoshi, K.4    Bull, A.T.5    Goodfellow, M.6
  • 7
    • 33847186292 scopus 로고    scopus 로고
    • Species-Specific secondary metabolite production in marine actinomycetes of the genus Salinispora
    • Jensen, P.R.; Williams, P.G.; Dong-Chan, O.; Zeigler, L.; Fenical, W. Species-Specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl. Environ. Microbiol. 2007, 73, 1146-1152.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1146-1152
    • Jensen, P.R.1    Williams, P.G.2    Dong-Chan, O.3    Zeigler, L.4    Fenical, W.5
  • 10
    • 0037455147 scopus 로고    scopus 로고
    • A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora
    • Feling, R.H.; Buchan, G.O.; Mincer, T.J.; Kauffman, C.A.; Jensen, P.R.; Fenical, W. Salinosporamide A: A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew. Chem. 2003, 42, 355-357.
    • (2003) Angew. Chem. , vol.42 , pp. 355-357
    • Feling, R.H.1    Buchan, G.O.2    Mincer, T.J.3    Kauffman, C.A.4    Jensen, P.R.5    Fenical, W.6    Salinosporamide, A.7
  • 11
    • 32244440458 scopus 로고    scopus 로고
    • Marinomycins A-D, antitumor-antibiotics of a new structure class from a marine actinomycete of the recently discovered genus "Marinispora"
    • Kwon, H.C.; Kauffman, C.A.; Jensen, P.R.; Fenical, W. Marinomycins A-D, antitumor-antibiotics of a new structure class from a marine actinomycete of the recently discovered genus "Marinispora". J. Am. Chem. Soc. 2006, 128, 1622-1632.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 1622-1632
    • Kwon, H.C.1    Kauffman, C.A.2    Jensen, P.R.3    Fenical, W.4
  • 12
    • 73449131956 scopus 로고    scopus 로고
    • Antitumor compounds from marine actinomycetes
    • Olano, C.; Méndez, C.; Salas, J.A. Antitumor compounds from marine actinomycetes. Mar. Drugs 2009, 7, 210-248.
    • (2009) Mar. Drugs , vol.7 , pp. 210-248
    • Olano, C.1    Méndez, C.2    Salas, J.A.3
  • 13
    • 39749179651 scopus 로고    scopus 로고
    • The marinopyrroles, antibiotics of an unprecedented structure class from a marine Streptomyces sp
    • Hughes, C.C.; Prieto-Davo, A.; Jensen, P.R.; Fenical, W. The marinopyrroles, antibiotics of an unprecedented structure class from a marine Streptomyces sp. Org. Lett. 2008, 10, 629-631.
    • (2008) Org. Lett. , vol.10 , pp. 629-631
    • Hughes, C.C.1    Prieto-Davo, A.2    Jensen, P.R.3    Fenical, W.4
  • 14
    • 0344759904 scopus 로고
    • Chemical studies of marine bacteria: Developing a new resource
    • Fenical, W. Chemical studies of marine bacteria: Developing a new resource. Chem. Rev. 1993, 93, 1673-1683.
    • (1993) Chem. Rev. , vol.93 , pp. 1673-1683
    • Fenical, W.1
  • 15
    • 77956254492 scopus 로고    scopus 로고
    • Bioprospecting microbial natural product libraries from the marine environment for drug discovery
    • Liu, X.; Ashforth, E.; Ren, B.; Song, F.; Dai, H.; Liu, M.; Wang, J.; Xie, Q.; Zhang, L. Bioprospecting microbial natural product libraries from the marine environment for drug discovery. J. Antibiot. (Tokyo) 2010, 63, 415-422.
    • (2010) J. Antibiot. (Tokyo) , vol.63 , pp. 415-422
    • Liu, X.1    Ashforth, E.2    Ren, B.3    Song, F.4    Dai, H.5    Liu, M.6    Wang, J.7    Xie, Q.8    Zhang, L.9
  • 16
    • 84856586273 scopus 로고    scopus 로고
    • Microdiversity and evidence for high dispersal rates in the marine actinomycete 'Salinispora pacifica'
    • Freel, K.C.; Edlund, A.; Jensen, P.R. Microdiversity and evidence for high dispersal rates in the marine actinomycete 'Salinispora pacifica'. Environ. Microbiol. 2012, 14, 480-493.
    • (2012) Environ. Microbiol. , vol.14 , pp. 480-493
    • Freel, K.C.1    Edlund, A.2    Jensen, P.R.3
  • 17
    • 0025919185 scopus 로고
    • Distribution of actinomycetes in near-shore tropical marine sediments
    • Jensen, P.R.; Dwight, R.; Fenical, W. Distribution of actinomycetes in near-shore tropical marine sediments. Appl. Environ. Microbiol. 1991, 57, 1102-1108.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1102-1108
    • Jensen, P.R.1    Dwight, R.2    Fenical, W.3
  • 19
    • 80052173091 scopus 로고    scopus 로고
    • Cytotoxic bipyridines from the marine-derived actinomycete Actinoalloteichus cyanogriseus WH1-2216-6
    • Fu, P.; Wang, S.; Hong, K.; Li, X.; Liu, P.; Wang, Y.; Zhu, W. Cytotoxic bipyridines from the marine-derived actinomycete Actinoalloteichus cyanogriseus WH1-2216-6. J. Nat. Prod. 2011, 74, 1751-1756.
    • (2011) J. Nat. Prod. , vol.74 , pp. 1751-1756
    • Fu, P.1    Wang, S.2    Hong, K.3    Li, X.4    Liu, P.5    Wang, Y.6    Zhu, W.7
  • 20
    • 0028857359 scopus 로고
    • The relative abundance and seawater requirements of gram-positive bacteria in near-shore tropical marine samples
    • Jensen, P.R.; Fenical, W. The relative abundance and seawater requirements of gram-positive bacteria in near-shore tropical marine samples. Microb. Ecol. 1995, 29, 249-257.
    • (1995) Microb. Ecol. , vol.29 , pp. 249-257
    • Jensen, P.R.1    Fenical, W.2
  • 21
    • 33744512094 scopus 로고    scopus 로고
    • Diversity and biogeography of marine actinobacteria
    • Ward, A.C. Diversity and biogeography of marine actinobacteria. Curr. Opin. Microbiol. 2006, 9, 279-286.
    • (2006) Curr. Opin. Microbiol. , vol.9 , pp. 279-286
    • Ward, A.C.1
  • 22
    • 20444488858 scopus 로고    scopus 로고
    • Culturable marine actinomycete diversity from tropical pacific ocean sediments
    • Jensen, P.R.; Gontang, E.; Mafnas, C.; Mincer, T.J.; Fenical, W. Culturable marine actinomycete diversity from tropical pacific ocean sediments. Environ. Microbiol. 2005, 7, 1039-1048.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1039-1048
    • Jensen, P.R.1    Gontang, E.2    Mafnas, C.3    Mincer, T.J.4    Fenical, W.5
  • 23
    • 79952453091 scopus 로고    scopus 로고
    • Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada
    • Lim, J.; Woodward, J.; Tulaczyk, S.; Christoffersen, P.; Cummings, S.P. Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada. Antonie Van Leeuwenhoek 2011, 99, 423-430.
    • (2011) Antonie Van Leeuwenhoek , vol.99 , pp. 423-430
    • Lim, J.1    Woodward, J.2    Tulaczyk, S.3    Christoffersen, P.4    Cummings, S.P.5
  • 24
    • 61449165890 scopus 로고    scopus 로고
    • Microbial diversity in cenozoic sediments recovered from the Lomonosov Ridge in the central arctic basin
    • Forschner, S.R.; Sheffer, R.; Rowley, D.C.; Smith, D.C. Microbial diversity in cenozoic sediments recovered from the Lomonosov Ridge in the central arctic basin. Environ. Microbiol. 2009, 11, 630-639.
    • (2009) Environ. Microbiol. , vol.11 , pp. 630-639
    • Forschner, S.R.1    Sheffer, R.2    Rowley, D.C.3    Smith, D.C.4
  • 25
    • 0033848286 scopus 로고    scopus 로고
    • Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic
    • Turley, C. Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic. FEMS Microbiol. Ecol. 2000, 33, 89-99.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 89-99
    • Turley, C.1
  • 27
    • 33745303955 scopus 로고    scopus 로고
    • Marine microbial diversity and ecology: Importance and future perspectives
    • Das, S.; Lyla, P.S.; Khan, S.A. Marine microbial diversity and ecology: Importance and future perspectives. Curr. Sci. 2006, 90, 1325-1335.
    • (2006) Curr. Sci. , vol.90 , pp. 1325-1335
    • Das, S.1    Lyla, P.S.2    Khan, S.A.3
  • 28
    • 84870834756 scopus 로고    scopus 로고
    • Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags
    • Wang, Y.; Sheng, H.-F.; He, Y.; Wu, J.-Y.; Jiang, Y.-X.; Tam, N.F.-Y.; Zhou, H.-W. Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags. Appl. Environ. Microbiol. 2012, 78, 8264-8271.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 8264-8271
    • Wang, Y.1    Sheng, H.-F.2    He, Y.3    Wu, J.-Y.4    Jiang, Y.-X.5    Tam, N.F.-Y.6    Zhou, H.-W.7
  • 30
  • 32
    • 34548293679 scopus 로고    scopus 로고
    • Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q.; Garrity, G.M.; Tiedje, J.M.; Cole, J.R. Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73, 5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 33
    • 0033831330 scopus 로고    scopus 로고
    • Search and discovery strategies for biotechnology: The paradigm shift
    • Bull, A.T. Search and discovery strategies for biotechnology: The paradigm shift. Microbiol. Mol. Biol. Rev. 2000, 64, 573-606.
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 573-606
    • Bull, A.T.1
  • 34
    • 84945495487 scopus 로고
    • Estimating the number of classes via sample coverage
    • Chao, A.; Lee, S. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 1992, 87, 210-217.
    • (1992) J. Am. Stat. Assoc. , vol.87 , pp. 210-217
    • Chao, A.1    Lee, S.2
  • 35
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao, A. Nonparametric estimation of the number of classes in a population. Scand. J. Stat. 1984, 11, 265-270.
    • (1984) Scand. J. Stat. , vol.11 , pp. 265-270
    • Chao, A.1
  • 36
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D.; Handelsman, J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 2005, 71, 1501-1506.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 37
    • 0842324405 scopus 로고    scopus 로고
    • Bacterial diversity in aquatic and other environments: What 16S rDNA libraries can tell us
    • Kemp, P.F.; Aller, J.Y. Bacterial diversity in aquatic and other environments: What 16S rDNA libraries can tell us. FEMS Microbiol. Ecol. 2004, 47, 161-177.
    • (2004) FEMS Microbiol. Ecol. , vol.47 , pp. 161-177
    • Kemp, P.F.1    Aller, J.Y.2
  • 38
    • 79951926011 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils
    • Nacke, H.; Thürmer, A.; Wollherr, A.; Will, C.; Hodac, L.; Herold, N.; Schöning, I.; Schrumpf, M.; Daniel, R. Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS One 2011, 6, 1-12.
    • (2011) PLoS One , vol.6 , pp. 1-12
    • Nacke, H.1    Thürmer, A.2    Wollherr, A.3    Will, C.4    Hodac, L.5    Herold, N.6    Schöning, I.7    Schrumpf, M.8    Daniel, R.9
  • 39
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer, N.; Jackson, R.B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. USA 2006, 103, 626-631.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 40
    • 84860510778 scopus 로고    scopus 로고
    • Bacterial community profiles from sediments of the Anacostia River using metabolic and molecular analyses
    • Bushaw-Newton, K.; Ewers, E.; Velinsky, D.; Ashley, J.; MacAvoy, S. Bacterial community profiles from sediments of the Anacostia River using metabolic and molecular analyses. Environ. Sci. Pollut. Res. 2012, 19, 1271-1279.
    • (2012) Environ. Sci. Pollut. Res. , vol.19 , pp. 1271-1279
    • Bushaw-Newton, K.1    Ewers, E.2    Velinsky, D.3    Ashley, J.4    MacAvoy, S.5
  • 41
    • 84896731272 scopus 로고    scopus 로고
    • University of Prince Edward Island, Charlottetown, PE, Canada. Unpublished work
    • Duncan, K. University of Prince Edward Island, Charlottetown, PE, Canada. Unpublished work, 2013.
    • (2013)
    • Duncan, K.1
  • 42
    • 35748979124 scopus 로고    scopus 로고
    • Spatial structure of the microbial community in sandy carbonate sediment
    • Sørensen, K.B.; Glazer, B.; Hannides, A.; Gaidos, E. Spatial structure of the microbial community in sandy carbonate sediment. Mar. Ecol. Prog. Ser. 2007, 346, 61-74.
    • (2007) Mar. Ecol. Prog. Ser. , vol.346 , pp. 61-74
    • Sørensen, K.B.1    Glazer, B.2    Hannides, A.3    Gaidos, E.4
  • 45
    • 77952672526 scopus 로고    scopus 로고
    • Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments
    • Hollister, E.B.; Engledow, A.S.; Hammett, A.J.; Provin, T.L.; Wilkinson, H.H.; Gentry, T.J. Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments. ISME J. 2010, 4, 829-838.
    • (2010) ISME J. , vol.4 , pp. 829-838
    • Hollister, E.B.1    Engledow, A.S.2    Hammett, A.J.3    Provin, T.L.4    Wilkinson, H.H.5    Gentry, T.J.6
  • 46
    • 2942702380 scopus 로고    scopus 로고
    • Rock fragments in soil support a different microbial community from the fine earth
    • Certini, G.; Campbell, C.D.; Edwards, A.C. Rock fragments in soil support a different microbial community from the fine earth. Soil Biol. Biochem. 2004, 36, 1119-1128.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 1119-1128
    • Certini, G.1    Campbell, C.D.2    Edwards, A.C.3
  • 47
    • 77953594953 scopus 로고    scopus 로고
    • The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes
    • Kirchman, D.L.; Cottrell, M.T.; Lovejoy, C. The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ. Microbiol. 2010, 12, 1132-1143.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1132-1143
    • Kirchman, D.L.1    Cottrell, M.T.2    Lovejoy, C.3
  • 48
    • 25144486755 scopus 로고    scopus 로고
    • Molecular diversity and ecology of microbial plankton
    • Giovannoni, S.J.; Stingl, U. Molecular diversity and ecology of microbial plankton. Nature 2005, 437, 343-348.
    • (2005) Nature , vol.437 , pp. 343-348
    • Giovannoni, S.J.1    Stingl, U.2
  • 50
    • 32044441838 scopus 로고    scopus 로고
    • Culture-dependent and culture-independent diversity within the obligate marine actinomycete genus Salinispora
    • Mincer, T.J.; Fenical, W.; Jensen, P.R. Culture-dependent and culture-independent diversity within the obligate marine actinomycete genus Salinispora. Appl. Environ. Microbiol. 2005, 71, 7019-7028.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7019-7028
    • Mincer, T.J.1    Fenical, W.2    Jensen, P.R.3
  • 51
    • 14744295092 scopus 로고    scopus 로고
    • Marine actinobacteria: Perspectives, challenges, future directions
    • Bull, A.T. Marine actinobacteria: Perspectives, challenges, future directions. Antonie Van Leeuwenhoek 2005, 87, 65-79.
    • (2005) Antonie Van Leeuwenhoek , vol.87 , pp. 65-79
    • Bull, A.T.1
  • 52
    • 46349095266 scopus 로고    scopus 로고
    • The occurrence of bioactive Micromonosporae in aquatic habitats of the sunshine coast in Australia
    • Eccleston, G.P.; Brooks, P.R.; Kurtböke, D.I. The occurrence of bioactive Micromonosporae in aquatic habitats of the sunshine coast in Australia. Mar. Drugs 2008, 6, 243-261.
    • (2008) Mar. Drugs , vol.6 , pp. 243-261
    • Eccleston, G.P.1    Brooks, P.R.2    Kurtböke, D.I.3
  • 53
    • 46749153342 scopus 로고    scopus 로고
    • Characterisation of micromonosporae from aquatic environments using molecular taxonomic methods
    • Maldonado, L.A. Characterisation of micromonosporae from aquatic environments using molecular taxonomic methods. Antonie van Leeuwenhoek 2008, 94, 289-298.
    • (2008) Antonie Van Leeuwenhoek , vol.94 , pp. 289-298
    • Maldonado, L.A.1
  • 54
    • 79961209508 scopus 로고    scopus 로고
    • Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology
    • Schwientek, P.; Szczepanowski, R.; Rückert, C.; Stoye, J.; Pühler, A. Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology. J. Biotechnol. 2011, 155, 68-77.
    • (2011) J. Biotechnol. , vol.155 , pp. 68-77
    • Schwientek, P.1    Szczepanowski, R.2    Rückert, C.3    Stoye, J.4    Pühler, A.5
  • 55
    • 45449116493 scopus 로고    scopus 로고
    • An assessment of actinobacterial diversity in the marine environment
    • Jensen, P.R. An assessment of actinobacterial diversity in the marine environment. Antonie Van Leeuwenhoek 2008, 94, 51-62.
    • (2008) Antonie Van Leeuwenhoek , vol.94 , pp. 51-62
    • Jensen, P.R.1
  • 56
    • 33745045183 scopus 로고    scopus 로고
    • New drugs from marine microbes: The tide is turning
    • Newman, D.J.; Hill, R.T. New drugs from marine microbes: The tide is turning. J. Ind. Microbiol. Biotechnol. 2006, 33, 539-544.
    • (2006) J. Ind. Microbiol. Biotechnol. , vol.33 , pp. 539-544
    • Newman, D.J.1    Hill, R.T.2
  • 57
    • 40449120034 scopus 로고    scopus 로고
    • A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: Use of multilocus sequence analysis for streptomycete systematics
    • Guo, Y.; Zheng, W.; Rong, X.; Huang, Y. A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: Use of multilocus sequence analysis for streptomycete systematics. Int. J. Syst. Evol. Microbiol. 2008, 58, 149-159.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 149-159
    • Guo, Y.1    Zheng, W.2    Rong, X.3    Huang, Y.4
  • 58
    • 34248151342 scopus 로고    scopus 로고
    • Biogeography of actinomycete communities and type II polyketide synthase genes in soils collected in New Jersey and Central Asia
    • Wawrik, B.; Kutliev, D.; Abdivasievna, U.A.; Kukor, J.J.; Zylstra, G.J.; Kerkhof, L. Biogeography of actinomycete communities and type II polyketide synthase genes in soils collected in New Jersey and Central Asia. Appl. Environ. Microbiol. 2007, 73, 2982-2989.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2982-2989
    • Wawrik, B.1    Kutliev, D.2    Abdivasievna, U.A.3    Kukor, J.J.4    Zylstra, G.J.5    Kerkhof, L.6
  • 59
    • 34249744449 scopus 로고    scopus 로고
    • Phylogenetic diversity of gram-positive bacteria cultured from marine sediments
    • Gontang, E.A.; Fenical, W.; Jensen, P.R. Phylogenetic diversity of gram-positive bacteria cultured from marine sediments. Appl. Environ. Microbiol. 2007, 73, 3272-3282.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 3272-3282
    • Gontang, E.A.1    Fenical, W.2    Jensen, P.R.3
  • 60
    • 0027341171 scopus 로고
    • Isolation and diversity of actinomycetes in the Chesapeake Bay
    • Takizawa, M.; Colwell, R.R.; Hill, R.T. Isolation and diversity of actinomycetes in the Chesapeake Bay. Appl. Environ. Microbiol. 1993, 59, 997-1002.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 997-1002
    • Takizawa, M.1    Colwell, R.R.2    Hill, R.T.3
  • 62
    • 0017395981 scopus 로고
    • A new alkaloid AM-2282 of Streptomyces origin taxonomy, fermentation, isolation and preliminary characterization
    • Omura, S.; Iwai, Y.; Hirano, A.; Nakagawa, A.; Awaya, J.; Tsuchiya, H.; Takahashi, Y.; Asuma, R. A new alkaloid AM-2282 of Streptomyces origin taxonomy, fermentation, isolation and preliminary characterization. J. Antibiot. 1977, 30, 275-282.
    • (1977) J. Antibiot. , vol.30 , pp. 275-282
    • Omura, S.1    Iwai, Y.2    Hirano, A.3    Nakagawa, A.4    Awaya, J.5    Tsuchiya, H.6    Takahashi, Y.7    Asuma, R.8
  • 64
    • 76849108765 scopus 로고    scopus 로고
    • Linking species concepts to natural product discovery in the post-genomic era
    • Jensen, P.R. Linking species concepts to natural product discovery in the post-genomic era. J. Ind. Microbiol. Biotechnol. 2010, 37, 219-224.
    • (2010) J. Ind. Microbiol. Biotechnol. , vol.37 , pp. 219-224
    • Jensen, P.R.1
  • 65
    • 0034752042 scopus 로고    scopus 로고
    • How many antibiotics are produced by the genus Streptomyces?
    • Watve, M.G.; Tickoo, R.; Jog, M.M.; Bhole, B.D. How many antibiotics are produced by the genus Streptomyces? Arch. Microbiol. 2001, 176, 386-390.
    • (2001) Arch. Microbiol. , vol.176 , pp. 386-390
    • Watve, M.G.1    Tickoo, R.2    Jog, M.M.3    Bhole, B.D.4
  • 66
    • 10444242640 scopus 로고    scopus 로고
    • Isolation and characterization of novel marine-derived actinomycete taxa rich in bioactive metabolites
    • Magarvey, N.A; Keller, J.M.; Bernan, V.; Dworkin, M.; Sherman, D.H. Isolation and characterization of novel marine-derived actinomycete taxa rich in bioactive metabolites. Appl. Environ. Microbiol. 2004, 70, 7520-7529.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7520-7529
    • Magarvey, N.A.1    Keller, J.M.2    Bernan, V.3    Dworkin, M.4    Sherman, D.H.5
  • 67
    • 34247109045 scopus 로고    scopus 로고
    • Natural products as sources of new drugs over the last 25 years
    • Newman, D.J.; Cragg, G.M. Natural products as sources of new drugs over the last 25 years. J. Nat. Prod. 2007, 70, 461-477.
    • (2007) J. Nat. Prod. , vol.70 , pp. 461-477
    • Newman, D.J.1    Cragg, G.M.2
  • 68
    • 84861179772 scopus 로고    scopus 로고
    • Microbial strain prioritization using metabolomics tools for the discovery of natural products
    • Hou, Y.; Braun, D.R.; Michel, C.R.; Klassen, J.L.; Adnani, N.; Wyche, T.P.; Bugni, T.S. Microbial strain prioritization using metabolomics tools for the discovery of natural products. Anal. Chem. 2012, 84, 4277-4283.
    • (2012) Anal. Chem. , vol.84 , pp. 4277-4283
    • Hou, Y.1    Braun, D.R.2    Michel, C.R.3    Klassen, J.L.4    Adnani, N.5    Wyche, T.P.6    Bugni, T.S.7
  • 70
    • 34848911303 scopus 로고    scopus 로고
    • Polyketide synthases and nonribosomal peptide synthetases: The emerging view from bacterial genomics
    • Donadio, S.; Monciardini, P.; Sosio, M. Polyketide synthases and nonribosomal peptide synthetases: The emerging view from bacterial genomics. Nat. Prod. Rep. 2007, 24, 1073-1109.
    • (2007) Nat. Prod. Rep. , vol.24 , pp. 1073-1109
    • Donadio, S.1    Monciardini, P.2    Sosio, M.3
  • 72
    • 0019366520 scopus 로고
    • An improved method for the determination of carbon in soils and soil extracts by dry combustion
    • Tiessen, H.; Bettany, J.R.; Stewart, J.W.B. An improved method for the determination of carbon in soils and soil extracts by dry combustion. Commun. Soil Sci. Plant Anal. 1981, 12, 211-218.
    • (1981) Commun. Soil Sci. Plant Anal. , vol.12 , pp. 211-218
    • Tiessen, H.1    Bettany, J.R.2    Stewart, J.W.B.3
  • 73
    • 0021560138 scopus 로고
    • Mehlich 3 soil test extractant: A modification of Mehlich 2 extractant
    • Mehlich, A. Mehlich 3 soil test extractant: A modification of Mehlich 2 extractant. Commun. Soil Sci. Plant Anal. 1984, 15, 1409-1416.
    • (1984) Commun. Soil Sci. Plant Anal. , vol.15 , pp. 1409-1416
    • Mehlich, A.1
  • 75
    • 49549107771 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
    • Dowd, S.E.; Callaway, T.R.; Wolcott, R.D.; Sun, Y.; McKeehan, T.; Hagevoort, R.G.; Edrington, T.S. Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol. 2008, 8, 1-8.
    • (2008) BMC Microbiol. , vol.8 , pp. 1-8
    • Dowd, S.E.1    Callaway, T.R.2    Wolcott, R.D.3    Sun, Y.4    McKeehan, T.5    Hagevoort, R.G.6    Edrington, T.S.7
  • 76
    • 84896694637 scopus 로고    scopus 로고
    • Homepage. Available online: (accessed on 5 September 2013).
    • Research and Testing Laboratory Homepage. Available online: http://www.researchandtesting.com (accessed on 5 September 2013).
  • 77
    • 53449086190 scopus 로고    scopus 로고
    • Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
    • Acosta-Martínez, V.; Dowd, S.; Sun, Y.; Allen, V. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biol. Biochem. 2008, 40, 2762-2770.
    • (2008) Soil Biol. Biochem. , vol.40 , pp. 2762-2770
    • Acosta-Martínez, V.1    Dowd, S.2    Sun, Y.3    Allen, V.4
  • 79
    • 83355173006 scopus 로고    scopus 로고
    • Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
    • Schloss, P.D.; Gevers, D.; Westcott, S.L. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 2011, 6, e2731.
    • (2011) PLoS One , vol.6
    • Schloss, P.D.1    Gevers, D.2    Westcott, S.L.3
  • 80
    • 84896721157 scopus 로고    scopus 로고
    • Schloss. Available online: (accessed on 1 October 2013)
    • Schloss. Mothur Wiki SOP. Available online: http://Www.Mothur.Org/Wiki/ 454-SOP (accessed on 1 October 2013).
    • Mothur Wiki SOP
  • 81
    • 84896697210 scopus 로고    scopus 로고
    • Available online: (accessed on 1 October 2013)
    • Mothur. Available online: http://www.mothur.org/wiki/Silva-reference (accessed on 1 October 2013).
  • 84
    • 0036795821 scopus 로고    scopus 로고
    • Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments
    • Mincer, T.J. Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl. Environ. Microbiol. 2002, 68, 5005-5011.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5005-5011
    • Mincer, T.J.1
  • 85
    • 14744287335 scopus 로고    scopus 로고
    • Diversity of cultivable actinobacteria in geographically widespread marine sediments
    • Maldonado, L.A. Diversity of cultivable actinobacteria in geographically widespread marine sediments. Antonie Van Leeuwenhoek 2005, 87, 11-18.
    • (2005) Antonie Van Leeuwenhoek , vol.87 , pp. 11-18
    • Maldonado, L.A.1
  • 87
  • 90
    • 0035319323 scopus 로고    scopus 로고
    • 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
    • Kaplan, C.W.; Astaire, J.C.; Sanders, M.E.; Reddy, B.S.; Kitts, C.L. 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 2001, 67, 1935-1939.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1935-1939
    • Kaplan, C.W.1    Astaire, J.C.2    Sanders, M.E.3    Reddy, B.S.4    Kitts, C.L.5
  • 91
    • 79953842189 scopus 로고    scopus 로고
    • Available online: (accessed on 1 June 2013)
    • Basic Local Alignment Search tool. Available online: http://blast.ncbi. nlm.nih.gov/Blast.cgi (accessed on 1 June 2013).
    • Basic Local Alignment Search Tool
  • 93
    • 84896710233 scopus 로고    scopus 로고
    • Available online: (accessed on 15 June 2013)
    • ClustalW2. Available online: http://www.ebi.ac.uk/tools/clustalw2 (accessed on 15 June 2013).
    • ClustalW2
  • 94
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N.; Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 95
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1


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