메뉴 건너뛰기




Volumn 351, Issue 2, 2014, Pages 187-194

The communities of tomato (Solanum lycopersicum L.) leaf endophytic bacteria, analyzed by 16S-ribosomal RNA gene pyrosequencing

Author keywords

Bacterial diversity; Culture independent bacterial analysis; Plant endophytic bacteria

Indexed keywords

RNA 16S;

EID: 84896724093     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/1574-6968.12377     Document Type: Article
Times cited : (120)

References (47)
  • 1
    • 65749114886 scopus 로고    scopus 로고
    • Comparative analysis of PR gene expression in tomato inoculated with virulent Fusarium oxysporum f. sp. lycopersici and the biocontrol strain F. oxysporum Fo47
    • Aimé S, Cordier C, Alabouvette C & Olivain C (2008) Comparative analysis of PR gene expression in tomato inoculated with virulent Fusarium oxysporum f. sp. lycopersici and the biocontrol strain F. oxysporum Fo47. Physiol Mol Plant Pathol 73: 9-15.
    • (2008) Physiol Mol Plant Pathol , vol.73 , pp. 9-15
    • Aimé, S.1    Cordier, C.2    Alabouvette, C.3    Olivain, C.4
  • 2
    • 34548482943 scopus 로고    scopus 로고
    • Novel alphaproteobacterial root nodule symbiont associated with Lupinus texensis
    • Andam CP & Parker MA (2007) Novel alphaproteobacterial root nodule symbiont associated with Lupinus texensis. Appl Environ Microbiol 73: 5687-5691.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5687-5691
    • Andam, C.P.1    Parker, M.A.2
  • 3
    • 84868319502 scopus 로고    scopus 로고
    • Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts
    • Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A & Howieson JG (2012) Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts. Int J Syst Evol Microbiol 62: 2579-2588.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 2579-2588
    • Ardley, J.K.1    Parker, M.A.2    De Meyer, S.E.3    Trengove, R.D.4    O'Hara, G.W.5    Reeve, W.G.6    Yates, R.J.7    Dilworth, M.J.8    Willems, A.9    Howieson, J.G.10
  • 5
    • 84874056533 scopus 로고    scopus 로고
    • Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana
    • Bodenhausen N, Horton MW & Bergelson J (2013) Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS ONE 8: e56329.
    • (2013) PLoS ONE , vol.8
    • Bodenhausen, N.1    Horton, M.W.2    Bergelson, J.3
  • 7
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JGJ, Kuczynski J, Stombaugh J et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.J.1    Kuczynski, J.2    Stombaugh, J.3
  • 8
    • 84055190922 scopus 로고    scopus 로고
    • Insights into Acinetobacter baumannii pathogenicity
    • Cerqueira GM & Peleg AY (2011) Insights into Acinetobacter baumannii pathogenicity. IUBMB Life 63: 1055-1060.
    • (2011) IUBMB Life , vol.63 , pp. 1055-1060
    • Cerqueira, G.M.1    Peleg, A.Y.2
  • 9
    • 84874669110 scopus 로고    scopus 로고
    • Biocontrol of tomato wilt disease by Bacillus subtilis isolates from natural environments depends on conserved genes mediating biofilm formation
    • Chen Y, Yan F, Chai Y, Liu H, Kolter R, Losick R & Guo J-H (2013) Biocontrol of tomato wilt disease by Bacillus subtilis isolates from natural environments depends on conserved genes mediating biofilm formation. Environ Microbiol 15: 848-864.
    • (2013) Environ Microbiol , vol.15 , pp. 848-864
    • Chen, Y.1    Yan, F.2    Chai, Y.3    Liu, H.4    Kolter, R.5    Losick, R.6    Guo, J.-H.7
  • 10
    • 58149200948 scopus 로고    scopus 로고
    • The ribosomal database project: improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E et al. (2009) The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3
  • 11
    • 77949264819 scopus 로고    scopus 로고
    • Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization
    • Compant S, Clément C & Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42: 669-678.
    • (2010) Soil Biol Biochem , vol.42 , pp. 669-678
    • Compant, S.1    Clément, C.2    Sessitsch, A.3
  • 12
    • 33847075006 scopus 로고    scopus 로고
    • Tomato genotype and Azospirillum inoculation modulate the changes in bacterial communities associated with roots and leaves
    • Correa OS, Romero AM, Montecchia MS & Soria MA (2007) Tomato genotype and Azospirillum inoculation modulate the changes in bacterial communities associated with roots and leaves. J Appl Microbiol 102: 781-786.
    • (2007) J Appl Microbiol , vol.102 , pp. 781-786
    • Correa, O.S.1    Romero, A.M.2    Montecchia, M.S.3    Soria, M.A.4
  • 13
    • 84871718165 scopus 로고    scopus 로고
    • Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria
    • Ding T, Palmer M & Melcher U (2013) Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria. BMC Microbiol 13: 1.
    • (2013) BMC Microbiol , vol.13 , pp. 1
    • Ding, T.1    Palmer, M.2    Melcher, U.3
  • 14
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 16
    • 34248551128 scopus 로고    scopus 로고
    • Culturable leaf-associated bacteria on tomato plants and their potential as biological control agents
    • Enya J, Shinohara H, Yoshida S, Tsukiboshi T, Negishi H, Suyama K & Tsushima S (2007a) Culturable leaf-associated bacteria on tomato plants and their potential as biological control agents. Microb Ecol 53: 524-536.
    • (2007) Microb Ecol , vol.53 , pp. 524-536
    • Enya, J.1    Shinohara, H.2    Yoshida, S.3    Tsukiboshi, T.4    Negishi, H.5    Suyama, K.6    Tsushima, S.7
  • 17
    • 34447526275 scopus 로고    scopus 로고
    • Phylogenetic diversities of dominant culturable Bacillus, Pseudomonas and Pantoea species on tomato leaves and their possibility as biological control agents
    • Enya J, Koitabashi M, Shinohara H, Yoshida S, Tsukiboshi T, Negishi H, Suyama K & Tsushima S (2007b) Phylogenetic diversities of dominant culturable Bacillus, Pseudomonas and Pantoea species on tomato leaves and their possibility as biological control agents. J Phytopathol 155: 446-453.
    • (2007) J Phytopathol , vol.155 , pp. 446-453
    • Enya, J.1    Koitabashi, M.2    Shinohara, H.3    Yoshida, S.4    Tsukiboshi, T.5    Negishi, H.6    Suyama, K.7    Tsushima, S.8
  • 18
    • 59949084793 scopus 로고    scopus 로고
    • Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina)
    • Estrella MJ, Munoz S, Soto MJ, Ruiz O & Sanjuan J (2009) Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina). Appl Environ Microbiol 75: 1088-1098.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1088-1098
    • Estrella, M.J.1    Munoz, S.2    Soto, M.J.3    Ruiz, O.4    Sanjuan, J.5
  • 19
    • 84860687144 scopus 로고    scopus 로고
    • Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice (Oryza sativa) varieties
    • Ferrando L, Mañay JF & Scavino AF (2012) Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice (Oryza sativa) varieties. FEMS Microbiol Ecol 80: 696-708.
    • (2012) FEMS Microbiol Ecol , vol.80 , pp. 696-708
    • Ferrando, L.1    Mañay, J.F.2    Scavino, A.F.3
  • 20
    • 84856744469 scopus 로고    scopus 로고
    • Microbial diversity inside pumpkins: microhabitat-specific communities display a high antagonistic potential against phytopathogens
    • Fürnkranz M, Lukesch B, Müller H, Huss H, Grube M & Berg G (2012) Microbial diversity inside pumpkins: microhabitat-specific communities display a high antagonistic potential against phytopathogens. Microb Ecol 63: 418-428.
    • (2012) Microb Ecol , vol.63 , pp. 418-428
    • Fürnkranz, M.1    Lukesch, B.2    Müller, H.3    Huss, H.4    Grube, M.5    Berg, G.6
  • 22
    • 84872757418 scopus 로고    scopus 로고
    • Rhizobium promotes non-legumes growth and quality in several production steps: towards a biofertilization of edible raw vegetables healthy for humans
    • García-Fraile P, Carro L, Robledo M et al. (2012) Rhizobium promotes non-legumes growth and quality in several production steps: towards a biofertilization of edible raw vegetables healthy for humans. PLoS ONE 7: e38122.
    • (2012) PLoS ONE , vol.7
    • García-Fraile, P.1    Carro, L.2    Robledo, M.3
  • 23
    • 80052769418 scopus 로고    scopus 로고
    • Populus deltoides roots harbor distinct microbial communities within the endosphere and rhizosphere across contrasting soil types
    • Gottel NR, Castro HF, Kerley M et al. (2011) Populus deltoides roots harbor distinct microbial communities within the endosphere and rhizosphere across contrasting soil types. Appl Environ Microbiol 77: 5934-5944.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 5934-5944
    • Gottel, N.R.1    Castro, H.F.2    Kerley, M.3
  • 24
    • 79952066010 scopus 로고    scopus 로고
    • Organic acid production and plant growth promotion as a function of phosphate solubilization by Acinetobacter rhizosphaerae strain BIHB 723 isolated from the cold deserts of the trans-Himalayas
    • Gulati A, Sharma N, Vyas P, Sood S, Rahi P, Pathania V & Prasad R (2010) Organic acid production and plant growth promotion as a function of phosphate solubilization by Acinetobacter rhizosphaerae strain BIHB 723 isolated from the cold deserts of the trans-Himalayas. Arch Microbiol 192: 975-983.
    • (2010) Arch Microbiol , vol.192 , pp. 975-983
    • Gulati, A.1    Sharma, N.2    Vyas, P.3    Sood, S.4    Rahi, P.5    Pathania, V.6    Prasad, R.7
  • 25
    • 45549086886 scopus 로고    scopus 로고
    • Array-based high-throughput DNA markers for crop improvement
    • Gupta PK, Rustgi S & Mir RR (2008) Array-based high-throughput DNA markers for crop improvement. Heredity 101: 5-18.
    • (2008) Heredity , vol.101 , pp. 5-18
    • Gupta, P.K.1    Rustgi, S.2    Mir, R.R.3
  • 26
    • 53049086655 scopus 로고    scopus 로고
    • Properties of bacterial endophytes and their proposed role in plant growth
    • Hardoim PR, van Overbeek LS & Elsas JDV (2008) Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol 16: 463-471.
    • (2008) Trends Microbiol , vol.16 , pp. 463-471
    • Hardoim, P.R.1    van Overbeek, L.S.2    Elsas, J.D.V.3
  • 27
    • 2442636907 scopus 로고    scopus 로고
    • Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense
    • Idris R, Trifonova R, Puschenreiter M, Wenzel WW & Sessitsch A (2004) Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl Environ Microbiol 70: 2667-2677.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2667-2677
    • Idris, R.1    Trifonova, R.2    Puschenreiter, M.3    Wenzel, W.W.4    Sessitsch, A.5
  • 28
    • 0031924813 scopus 로고    scopus 로고
    • Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs
    • James EK & Olivares FL (1998) Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs. Crit Rev Plant Sci 17: 77-119.
    • (1998) Crit Rev Plant Sci , vol.17 , pp. 77-119
    • James, E.K.1    Olivares, F.L.2
  • 29
    • 0036405388 scopus 로고    scopus 로고
    • Microbial communities and their interactions in soil and rhizosphere ecosystems
    • Kent AD & Triplett EW (2002) Microbial communities and their interactions in soil and rhizosphere ecosystems. Annu Rev Microbiol 56: 211-236.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 211-236
    • Kent, A.D.1    Triplett, E.W.2
  • 31
    • 84863551304 scopus 로고    scopus 로고
    • Top 10 plant pathogenic bacteria in molecular plant pathology
    • Mansfield J, Genin S, Magori S et al. (2012) Top 10 plant pathogenic bacteria in molecular plant pathology. Mol Plant Pathol 13: 614-629.
    • (2012) Mol Plant Pathol , vol.13 , pp. 614-629
    • Mansfield, J.1    Genin, S.2    Magori, S.3
  • 32
    • 0032835208 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots
    • Marilley L & Aragno M (1999) Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots. Appl Soil Ecol 13: 127-136.
    • (1999) Appl Soil Ecol , vol.13 , pp. 127-136
    • Marilley, L.1    Aragno, M.2
  • 33
    • 77449105647 scopus 로고    scopus 로고
    • Rhizobial association with non-legumes: mechanisms and applications
    • Mehboob I, Naveed M & Zahir ZA (2009) Rhizobial association with non-legumes: mechanisms and applications. Crit Rev Plant Sci 28: 432-456.
    • (2009) Crit Rev Plant Sci , vol.28 , pp. 432-456
    • Mehboob, I.1    Naveed, M.2    Zahir, Z.A.3
  • 34
    • 84878004134 scopus 로고    scopus 로고
    • Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
    • Ottesen A, Gonzalez Pena A, White J et al. (2013) Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato). BMC Microbiol 13: 114.
    • (2013) BMC Microbiol , vol.13 , pp. 114
    • Ottesen, A.1    Gonzalez Pena, A.2    White, J.3
  • 35
    • 77950645383 scopus 로고    scopus 로고
    • Genomics of fungal disease resistance in tomato
    • Panthee D & Chen F (2010) Genomics of fungal disease resistance in tomato. Curr Genomics 11: 30-39.
    • (2010) Curr Genomics , vol.11 , pp. 30-39
    • Panthee, D.1    Chen, F.2
  • 37
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS & Arkin AP (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641-1650.
    • (2009) Mol Biol Evol , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 38
    • 79961166135 scopus 로고    scopus 로고
    • Living inside plants: bacterial endophytes
    • Reinhold-Hurek B & Hurek T (2011) Living inside plants: bacterial endophytes. Curr Opin Plant Biol 14: 435-443.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 435-443
    • Reinhold-Hurek, B.1    Hurek, T.2
  • 40
    • 62149125538 scopus 로고    scopus 로고
    • Bacterial diversity analysis of huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing
    • Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu S-E & Wang N (2009) Bacterial diversity analysis of huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol 75: 1566-1574.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1566-1574
    • Sagaram, U.S.1    DeAngelis, K.M.2    Trivedi, P.3    Andersen, G.L.4    Lu, S.-E.5    Wang, N.6
  • 41
    • 84867141841 scopus 로고    scopus 로고
    • Recent advances in tomato functional genomics: utilization of VIGS
    • Sahu P, Puranik S, Khan M & Prasad M (2012) Recent advances in tomato functional genomics: utilization of VIGS. Protoplasma 249: 1017-1027.
    • (2012) Protoplasma , vol.249 , pp. 1017-1027
    • Sahu, P.1    Puranik, S.2    Khan, M.3    Prasad, M.4
  • 42
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3
  • 43
    • 84864241592 scopus 로고    scopus 로고
    • Distinct soil bacterial communities revealed under a diversely managed agroecosystem
    • Shange RS, Ankumah RO, Ibekwe AM, Zabawa R & Dowd SE (2012) Distinct soil bacterial communities revealed under a diversely managed agroecosystem. PLoS ONE 7: e40338.
    • (2012) PLoS ONE , vol.7
    • Shange, R.S.1    Ankumah, R.O.2    Ibekwe, A.M.3    Zabawa, R.4    Dowd, S.E.5
  • 44
    • 0033844380 scopus 로고    scopus 로고
    • Endophytic communities of rhizobacteria and the strategies required to create yield enhancing associations with crops
    • Sturz AV & Nowak J (2000) Endophytic communities of rhizobacteria and the strategies required to create yield enhancing associations with crops. Appl Soil Ecol 15: 183-190.
    • (2000) Appl Soil Ecol , vol.15 , pp. 183-190
    • Sturz, A.V.1    Nowak, J.2
  • 45
    • 0033982720 scopus 로고    scopus 로고
    • Bacterial endophytes: potential role in developing sustainable systems of crop production
    • Sturz AV, Christie BR & Nowak J (2000) Bacterial endophytes: potential role in developing sustainable systems of crop production. Crit Rev Plant Sci 19: 1-30.
    • (2000) Crit Rev Plant Sci , vol.19 , pp. 1-30
    • Sturz, A.V.1    Christie, B.R.2    Nowak, J.3
  • 47
    • 79954571664 scopus 로고    scopus 로고
    • Bacterial community diversity and variation in spray water sources and the tomato fruit surface
    • Telias A, White J, Pahl D, Ottesen A & Walsh C (2011) Bacterial community diversity and variation in spray water sources and the tomato fruit surface. BMC Microbiol 11: 81.
    • (2011) BMC Microbiol , vol.11 , pp. 81
    • Telias, A.1    White, J.2    Pahl, D.3    Ottesen, A.4    Walsh, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.