메뉴 건너뛰기




Volumn 10, Issue 1, 2014, Pages

ComEA Is Essential for the Transfer of External DNA into the Periplasm in Naturally Transformable Vibrio cholerae Cells

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; PROTEIN COMEA; UNCLASSIFIED DRUG;

EID: 84896704461     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004066     Document Type: Article
Times cited : (84)

References (76)
  • 1
    • 28544449319 scopus 로고    scopus 로고
    • The ins and outs of DNA transfer in bacteria
    • Chen I, Christie PJ, Dubnau D, (2005) The ins and outs of DNA transfer in bacteria. Science 310: 1456-1460.
    • (2005) Science , vol.310 , pp. 1456-1460
    • Chen, I.1    Christie, P.J.2    Dubnau, D.3
  • 2
    • 3042596928 scopus 로고    scopus 로고
    • DNA uptake during bacterial transformation
    • Chen I, Dubnau D, (2004) DNA uptake during bacterial transformation. Nat Rev Microbiol 2: 241-249.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 241-249
    • Chen, I.1    Dubnau, D.2
  • 3
    • 64349121964 scopus 로고    scopus 로고
    • Bacterial translocation motors investigated by single molecule techniques
    • Allemand JF, Maier B, (2009) Bacterial translocation motors investigated by single molecule techniques. FEMS Microbiol Rev 33: 593-610.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 593-610
    • Allemand, J.F.1    Maier, B.2
  • 5
    • 33746320813 scopus 로고    scopus 로고
    • Induction of competence regulons as a general response to stress in gram-positive bacteria
    • Claverys JP, Prudhomme M, Martin B, (2006) Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu Rev Microbiol 60: 451-475.
    • (2006) Annu Rev Microbiol , vol.60 , pp. 451-475
    • Claverys, J.P.1    Prudhomme, M.2    Martin, B.3
  • 6
    • 84876106424 scopus 로고    scopus 로고
    • Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria
    • Seitz P, Blokesch M, (2013) Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria. FEMS Microbiol Rev 37: 336-363.
    • (2013) FEMS Microbiol Rev , vol.37 , pp. 336-363
    • Seitz, P.1    Blokesch, M.2
  • 7
    • 0028136885 scopus 로고
    • Bacterial gene transfer by natural genetic transformation in the environment
    • Lorenz MG, Wackernagel W, (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 58: 563-602.
    • (1994) Microbiol Rev , vol.58 , pp. 563-602
    • Lorenz, M.G.1    Wackernagel, W.2
  • 9
    • 0036780202 scopus 로고    scopus 로고
    • Effects of global climate on infectious disease: the cholera model
    • Lipp EK, Huq A, Colwell RR, (2002) Effects of global climate on infectious disease: the cholera model. Clin Microbiol Rev 15: 757-770.
    • (2002) Clin Microbiol Rev , vol.15 , pp. 757-770
    • Lipp, E.K.1    Huq, A.2    Colwell, R.R.3
  • 10
    • 84859823889 scopus 로고    scopus 로고
    • Chitin colonization, chitin degradation and chitin-induced natural competence of Vibrio cholerae are subject to catabolite repression
    • Blokesch M, (2012) Chitin colonization, chitin degradation and chitin-induced natural competence of Vibrio cholerae are subject to catabolite repression. Environ Microbiol 14: 1898-1912.
    • (2012) Environ Microbiol , vol.14 , pp. 1898-1912
    • Blokesch, M.1
  • 11
    • 84887087816 scopus 로고    scopus 로고
    • DNA-uptake machinery of naturally competent Vibrio cholerae
    • Seitz P, Blokesch M, (2013) DNA-uptake machinery of naturally competent Vibrio cholerae. Proc Natl Acad Sci USA 110: 17987-17992.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 17987-17992
    • Seitz, P.1    Blokesch, M.2
  • 12
    • 42649085698 scopus 로고    scopus 로고
    • Type IV pili: e pluribus unum?
    • Pelicic V, (2008) Type IV pili: e pluribus unum? Mol Microbiol 68: 827-837.
    • (2008) Mol Microbiol , vol.68 , pp. 827-837
    • Pelicic, V.1
  • 13
    • 64349108725 scopus 로고    scopus 로고
    • The genetic transformation machinery: composition, localization, and mechanism
    • Claverys JP, Martin B, Polard P, (2009) The genetic transformation machinery: composition, localization, and mechanism. FEMS Microbiol Rev 33: 643-656.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 643-656
    • Claverys, J.P.1    Martin, B.2    Polard, P.3
  • 14
    • 79955746482 scopus 로고    scopus 로고
    • Two steps away from novelty-principles of bacterial DNA uptake
    • Krüger NJ, Stingl K, (2011) Two steps away from novelty-principles of bacterial DNA uptake. Mol Microbiol 80: 860-867.
    • (2011) Mol Microbiol , vol.80 , pp. 860-867
    • Krüger, N.J.1    Stingl, K.2
  • 15
    • 33745714419 scopus 로고    scopus 로고
    • Dynamics of DNA ejection from bacteriophage
    • Inamdar MM, Gelbart WM, Phillips R, (2006) Dynamics of DNA ejection from bacteriophage. Biophys J 91: 411-420.
    • (2006) Biophys J , vol.91 , pp. 411-420
    • Inamdar, M.M.1    Gelbart, W.M.2    Phillips, R.3
  • 16
    • 22144490482 scopus 로고    scopus 로고
    • Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis
    • Hahn J, Maier B, Haijema BJ, Sheetz M, Dubnau D, (2005) Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis. Cell 122: 59-71.
    • (2005) Cell , vol.122 , pp. 59-71
    • Hahn, J.1    Maier, B.2    Haijema, B.J.3    Sheetz, M.4    Dubnau, D.5
  • 17
    • 22144453199 scopus 로고    scopus 로고
    • Intracellular protein and DNA dynamics in competent Bacillus subtilis cells
    • Kidane D, Graumann PL, (2005) Intracellular protein and DNA dynamics in competent Bacillus subtilis cells. Cell 122: 73-84.
    • (2005) Cell , vol.122 , pp. 73-84
    • Kidane, D.1    Graumann, P.L.2
  • 18
    • 34447334797 scopus 로고    scopus 로고
    • Multiple interactions among the competence proteins of Bacillus subtilis
    • Kramer N, Hahn J, Dubnau D, (2007) Multiple interactions among the competence proteins of Bacillus subtilis. Mol Microbiol 65: 454-464.
    • (2007) Mol Microbiol , vol.65 , pp. 454-464
    • Kramer, N.1    Hahn, J.2    Dubnau, D.3
  • 19
    • 79952806966 scopus 로고    scopus 로고
    • The three-layered DNA uptake machinery at the cell pole in competent Bacillus subtilis cells is a stable complex
    • Kaufenstein M, van der Laan M, Graumann PL, (2011) The three-layered DNA uptake machinery at the cell pole in competent Bacillus subtilis cells is a stable complex. J Bacteriol 193: 1633-1642.
    • (2011) J Bacteriol , vol.193 , pp. 1633-1642
    • Kaufenstein, M.1    van der Laan, M.2    Graumann, P.L.3
  • 20
    • 0029045337 scopus 로고
    • ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport
    • Inamine GS, Dubnau D, (1995) ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport. J Bacteriol 177: 3045-3051.
    • (1995) J Bacteriol , vol.177 , pp. 3045-3051
    • Inamine, G.S.1    Dubnau, D.2
  • 21
    • 0032896753 scopus 로고    scopus 로고
    • ComEA is a DNA receptor for transformation of competent Bacillus subtilis
    • Provvedi R, Dubnau D, (1999) ComEA is a DNA receptor for transformation of competent Bacillus subtilis. Mol Microbiol 31: 271-280.
    • (1999) Mol Microbiol , vol.31 , pp. 271-280
    • Provvedi, R.1    Dubnau, D.2
  • 22
    • 0036069648 scopus 로고    scopus 로고
    • Uptake of transforming DNA in Gram-positive bacteria: a view from Streptococcus pneumoniae
    • Berge M, Moscoso M, Prudhomme M, Martin B, Claverys JP, (2002) Uptake of transforming DNA in Gram-positive bacteria: a view from Streptococcus pneumoniae. Mol Microbiol 45: 411-421.
    • (2002) Mol Microbiol , vol.45 , pp. 411-421
    • Berge, M.1    Moscoso, M.2    Prudhomme, M.3    Martin, B.4    Claverys, J.P.5
  • 23
    • 0035026419 scopus 로고    scopus 로고
    • ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity
    • Chen I, Gotschlich EC, (2001) ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity. J Bacteriol 183: 3160-3168.
    • (2001) J Bacteriol , vol.183 , pp. 3160-3168
    • Chen, I.1    Gotschlich, E.C.2
  • 24
    • 80052517195 scopus 로고    scopus 로고
    • Quorum sensing contributes to natural transformation of Vibrio cholerae in a species-specific manner
    • Suckow G, Seitz P, Blokesch M, (2011) Quorum sensing contributes to natural transformation of Vibrio cholerae in a species-specific manner. J Bacteriol 193: 4914-4924.
    • (2011) J Bacteriol , vol.193 , pp. 4914-4924
    • Suckow, G.1    Seitz, P.2    Blokesch, M.3
  • 25
    • 84864058695 scopus 로고    scopus 로고
    • The regulatory network of natural competence and transformation of Vibrio cholerae
    • Lo Scrudato M, Blokesch M, (2012) The regulatory network of natural competence and transformation of Vibrio cholerae. PLoS Genet 8: e1002778.
    • (2012) PLoS Genet , vol.8
    • Lo Scrudato, M.1    Blokesch, M.2
  • 26
    • 84876015664 scopus 로고    scopus 로고
    • A quorum sensing-mediated switch contributes to natural transformation of Vibrio cholerae
    • Blokesch M, (2012) A quorum sensing-mediated switch contributes to natural transformation of Vibrio cholerae. Mob Genet Elements 2: 224-227.
    • (2012) Mob Genet Elements , vol.2 , pp. 224-227
    • Blokesch, M.1
  • 28
    • 0033082623 scopus 로고    scopus 로고
    • Photobleaching GFP reveals protein dynamics inside live cells
    • White J, Stelzer E, (1999) Photobleaching GFP reveals protein dynamics inside live cells. Trends Cell Biol 9: 61-65.
    • (1999) Trends Cell Biol , vol.9 , pp. 61-65
    • White, J.1    Stelzer, E.2
  • 29
    • 84860255190 scopus 로고    scopus 로고
    • Advanced fluorescence microscopy techniques-FRAP, FLIP, FLAP, FRET and FLIM
    • Ishikawa-Ankerhold HC, Ankerhold R, Drummen GP, (2012) Advanced fluorescence microscopy techniques-FRAP, FLIP, FLAP, FRET and FLIM. Molecules 17: 4047-4132.
    • (2012) Molecules , vol.17 , pp. 4047-4132
    • Ishikawa-Ankerhold, H.C.1    Ankerhold, R.2    Drummen, G.P.3
  • 30
    • 58049195711 scopus 로고    scopus 로고
    • Pasteurellaceae ComE1 proteins combine the properties of fibronectin adhesins and DNA binding competence proteins
    • Mullen LM, Bosse JT, Nair SP, Ward JM, Rycroft AN, et al. (2008) Pasteurellaceae ComE1 proteins combine the properties of fibronectin adhesins and DNA binding competence proteins. PLoS One 3: e3991.
    • (2008) PLoS One , vol.3
    • Mullen, L.M.1    Bosse, J.T.2    Nair, S.P.3    Ward, J.M.4    Rycroft, A.N.5
  • 31
    • 35048896133 scopus 로고    scopus 로고
    • Cj0011c, a periplasmic single- and double-stranded DNA-binding protein, contributes to natural transformation in Campylobacter jejuni
    • Jeon B, Zhang Q, (2007) Cj0011c, a periplasmic single- and double-stranded DNA-binding protein, contributes to natural transformation in Campylobacter jejuni. J Bacteriol 189: 7399-7407.
    • (2007) J Bacteriol , vol.189 , pp. 7399-7407
    • Jeon, B.1    Zhang, Q.2
  • 32
    • 0029929070 scopus 로고    scopus 로고
    • The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA
    • Doherty AJ, Serpell LC, Ponting CP, (1996) The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Res 24: 2488-2497.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2488-2497
    • Doherty, A.J.1    Serpell, L.C.2    Ponting, C.P.3
  • 33
    • 0034661711 scopus 로고    scopus 로고
    • Common fold in helix-hairpin-helix proteins
    • Shao X, Grishin NV, (2000) Common fold in helix-hairpin-helix proteins. Nucleic Acids Res 28: 2643-2650.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2643-2650
    • Shao, X.1    Grishin, N.V.2
  • 34
    • 0033917124 scopus 로고    scopus 로고
    • Green fluorescent protein functions as a reporter for protein localization in Escherichia coli
    • Feilmeier BJ, Iseminger G, Schroeder D, Webber H, Phillips GJ, (2000) Green fluorescent protein functions as a reporter for protein localization in Escherichia coli. J Bacteriol 182: 4068-4076.
    • (2000) J Bacteriol , vol.182 , pp. 4068-4076
    • Feilmeier, B.J.1    Iseminger, G.2    Schroeder, D.3    Webber, H.4    Phillips, G.J.5
  • 36
    • 0025953682 scopus 로고
    • Distinguishing between the extracellular DNases of Vibrio cholerae and development of a transformation system
    • Focareta T, Manning PA, (1991) Distinguishing between the extracellular DNases of Vibrio cholerae and development of a transformation system. Mol Microbiol 5: 2547-2555.
    • (1991) Mol Microbiol , vol.5 , pp. 2547-2555
    • Focareta, T.1    Manning, P.A.2
  • 37
    • 0025719411 scopus 로고
    • Genetic analysis of the export of an extracellular DNase of Vibrio cholerae using DNase-beta-lactamase fusions
    • Focareta T, Manning PA, (1991) Genetic analysis of the export of an extracellular DNase of Vibrio cholerae using DNase-beta-lactamase fusions. Gene 108: 31-37.
    • (1991) Gene , vol.108 , pp. 31-37
    • Focareta, T.1    Manning, P.A.2
  • 38
    • 55749104259 scopus 로고    scopus 로고
    • The extracellular nuclease Dns and its role in natural transformation of Vibrio cholerae
    • Blokesch M, (2008) Schoolnik GK (2008) The extracellular nuclease Dns and its role in natural transformation of Vibrio cholerae. J Bacteriol 190: 7232-7240.
    • (2008) J Bacteriol , vol.190 , pp. 7232-7240
    • Blokesch, M.1    Schoolnik, G.K.2
  • 39
    • 77954288774 scopus 로고    scopus 로고
    • Dali server: conservation mapping in 3D
    • Holm L, Rosenstrom P, (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res 38: W545-549.
    • (2010) Nucleic Acids Res , vol.38
    • Holm, L.1    Rosenstrom, P.2
  • 40
    • 23444433228 scopus 로고    scopus 로고
    • Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions
    • Yang Y, Sass LE, Du C, Hsieh P, Erie DA, (2005) Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions. Nucleic Acids Res 33: 4322-4334.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4322-4334
    • Yang, Y.1    Sass, L.E.2    Du, C.3    Hsieh, P.4    Erie, D.A.5
  • 41
    • 34447325120 scopus 로고    scopus 로고
    • A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA
    • Mortier-Barriere I, Velten M, Dupaigne P, Mirouze N, Pietrement O, et al. (2007) A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell 130: 824-836.
    • (2007) Cell , vol.130 , pp. 824-836
    • Mortier-Barriere, I.1    Velten, M.2    Dupaigne, P.3    Mirouze, N.4    Pietrement, O.5
  • 43
    • 84868308609 scopus 로고    scopus 로고
    • Seventeen Sxy-dependent cyclic AMP receptor protein site-regulated genes are needed for natural transformation in Haemophilus influenzae
    • Sinha S, Mell JC, Redfield RJ, (2012) Seventeen Sxy-dependent cyclic AMP receptor protein site-regulated genes are needed for natural transformation in Haemophilus influenzae. J Bacteriol 194: 5245-5254.
    • (2012) J Bacteriol , vol.194 , pp. 5245-5254
    • Sinha, S.1    Mell, J.C.2    Redfield, R.J.3
  • 44
    • 16244387909 scopus 로고    scopus 로고
    • Cryo-electron microscopy reveals native polymeric cell wall structure in Bacillus subtilis 168 and the existence of a periplasmic space
    • Matias VR, Beveridge TJ, (2005) Cryo-electron microscopy reveals native polymeric cell wall structure in Bacillus subtilis 168 and the existence of a periplasmic space. Mol Microbiol 56: 240-251.
    • (2005) Mol Microbiol , vol.56 , pp. 240-251
    • Matias, V.R.1    Beveridge, T.J.2
  • 45
    • 84884676627 scopus 로고    scopus 로고
    • Midcell recruitment of the DNA uptake and virulence nuclease, EndA, for pneumococcal transformation
    • Berge MJ, Kamgoue A, Martin B, Polard P, Campo N, et al. (2013) Midcell recruitment of the DNA uptake and virulence nuclease, EndA, for pneumococcal transformation. PLoS Pathog 9: e1003596.
    • (2013) PLoS Pathog , vol.9
    • Berge, M.J.1    Kamgoue, A.2    Martin, B.3    Polard, P.4    Campo, N.5
  • 47
    • 0027194759 scopus 로고
    • Cellular motions and thermal fluctuations: the Brownian ratchet
    • Peskin CS, Odell GM, Oster GF, (1993) Cellular motions and thermal fluctuations: the Brownian ratchet. Biophys J 65: 316-324.
    • (1993) Biophys J , vol.65 , pp. 316-324
    • Peskin, C.S.1    Odell, G.M.2    Oster, G.F.3
  • 48
    • 18744384874 scopus 로고    scopus 로고
    • Chaperone-assisted translocation
    • Ambjörnsson T, Metzler R, (2004) Chaperone-assisted translocation. Phys Biol 1: 77-88.
    • (2004) Phys Biol , vol.1 , pp. 77-88
    • Ambjörnsson, T.1    Metzler, R.2
  • 50
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron C, Vieira J, Messing J, (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 51
    • 0023042283 scopus 로고
    • Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
    • Studier FW, Moffatt BA, (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189: 113-130.
    • (1986) J Mol Biol , vol.189 , pp. 113-130
    • Studier, F.W.1    Moffatt, B.A.2
  • 52
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria
    • Simon R, Priefer U, Pühler A, (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Nat Biotechnol 1: 784-791.
    • (1983) Nat Biotechnol , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Pühler, A.3
  • 53
    • 0031906352 scopus 로고    scopus 로고
    • Role of rpoS in stress survival and virulence of Vibrio cholerae
    • Yildiz FH, (1998) Schoolnik GK (1998) Role of rpoS in stress survival and virulence of Vibrio cholerae. J Bacteriol 180: 773-784.
    • (1998) J Bacteriol , vol.180 , pp. 773-784
    • Yildiz, F.H.1    Schoolnik, G.K.2
  • 55
    • 77956885050 scopus 로고    scopus 로고
    • Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination
    • De Souza Silva O, Blokesch M, (2010) Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination. Plasmid 64: 186-195.
    • (2010) Plasmid , vol.64 , pp. 186-195
    • De Souza Silva, O.1    Blokesch, M.2
  • 56
    • 84868288795 scopus 로고    scopus 로고
    • TransFLP - a method to genetically modify V. cholerae based on natural transformation and FLP-recombination
    • doi:3710.3791/3761
    • Blokesch M, (2012) TransFLP - a method to genetically modify V. cholerae based on natural transformation and FLP-recombination. J Vis Exp 68: e3761 doi:3710.3791/3761.
    • (2012) J Vis Exp , vol.68
    • Blokesch, M.1
  • 57
    • 84872122938 scopus 로고    scopus 로고
    • Overexpression of the tcp gene cluster using the T7 RNA polymerase/promoter system and natural transformation-mediated genetic engineering of Vibrio cholerae
    • Borgeaud S, Blokesch M, (2013) Overexpression of the tcp gene cluster using the T7 RNA polymerase/promoter system and natural transformation-mediated genetic engineering of Vibrio cholerae. PLoS One 8: e53952.
    • (2013) PLoS One , vol.8
    • Borgeaud, S.1    Blokesch, M.2
  • 58
    • 77952699583 scopus 로고    scopus 로고
    • Natural transformation of Vibrio cholerae as a tool-optimizing the procedure
    • Marvig RL, Blokesch M, (2010) Natural transformation of Vibrio cholerae as a tool-optimizing the procedure. BMC Microbiol 10: 155.
    • (2010) BMC Microbiol , vol.10 , pp. 155
    • Marvig, R.L.1    Blokesch, M.2
  • 59
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team, ViennaAustria: R Foundation for Statistical Computing
    • R Development Core Team (2009) R: A language and environment for statistical computing. ViennaAustria: R Foundation for Statistical Computing. 409 p.
    • (2009) R: A language and environment for statistical computing , pp. 409
  • 60
    • 0034567210 scopus 로고    scopus 로고
    • Comparative protein structure modeling. Introduction and practical examples with modeller
    • Sanchez R, Sali A, (2000) Comparative protein structure modeling. Introduction and practical examples with modeller. Methods Mol Biol 143: 97-129.
    • (2000) Methods Mol Biol , vol.143 , pp. 97-129
    • Sanchez, R.1    Sali, A.2
  • 64
    • 34250318638 scopus 로고    scopus 로고
    • Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers
    • Perez A, Marchan I, Svozil D, Sponer J, Cheatham TE III, et al. (2007) Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers. Biophys J 92: 3817-3829.
    • (2007) Biophys J , vol.92 , pp. 3817-3829
    • Perez, A.1    Marchan, I.2    Svozil, D.3    Sponer, J.4    Cheatham III, T.E.5
  • 66
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23: 327-341.
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 67
    • 0033104039 scopus 로고    scopus 로고
    • New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations
    • Darden T, Perera L, Li L, Pedersen L, (1999) New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations. Structure 7: R55-60.
    • (1999) Structure , vol.7
    • Darden, T.1    Perera, L.2    Li, L.3    Pedersen, L.4
  • 68
    • 36449003554 scopus 로고
    • Constant-Pressure Molecular-Dynamics Algorithms
    • Martyna GJ, Tobias DJ, Klein ML, (1994) Constant-Pressure Molecular-Dynamics Algorithms. J Chem Phys 101: 4177-4189.
    • (1994) J Chem Phys , vol.101 , pp. 4177-4189
    • Martyna, G.J.1    Tobias, D.J.2    Klein, M.L.3
  • 69
    • 36449007836 scopus 로고
    • Constant-Pressure Molecular-Dynamics Simulation - the Langevin Piston Method
    • Feller SE, Zhang YH, Pastor RW, Brooks BR, (1995) Constant-Pressure Molecular-Dynamics Simulation- the Langevin Piston Method. J Chem Phys 103: 4613-4621.
    • (1995) J Chem Phys , vol.103 , pp. 4613-4621
    • Feller, S.E.1    Zhang, Y.H.2    Pastor, R.W.3    Brooks, B.R.4
  • 71
    • 84876024407 scopus 로고    scopus 로고
    • A transcriptional regulator linking quorum sensing and chitin induction to render Vibrio cholerae naturally transformable
    • Lo Scrudato M, Blokesch M, (2013) A transcriptional regulator linking quorum sensing and chitin induction to render Vibrio cholerae naturally transformable. Nucleic Acids Res 41: 3644-3658.
    • (2013) Nucleic Acids Res , vol.41 , pp. 3644-3658
    • Lo Scrudato, M.1    Blokesch, M.2
  • 72
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM, (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 73
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G, Nielsen H, (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786.
    • (2011) Nat Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 74
    • 0034406525 scopus 로고    scopus 로고
    • Components and dynamics of fiber formation define a ubiquitous biogenesis pathway for bacterial pili
    • Wolfgang M, van Putten JP, Hayes SF, Dorward D, Koomey M, (2000) Components and dynamics of fiber formation define a ubiquitous biogenesis pathway for bacterial pili. EMBO J 19: 6408-6418.
    • (2000) EMBO J , vol.19 , pp. 6408-6418
    • Wolfgang, M.1    van Putten, J.P.2    Hayes, S.F.3    Dorward, D.4    Koomey, M.5
  • 75
    • 79961171407 scopus 로고    scopus 로고
    • Secretins: dynamic channels for protein transport across membranes
    • Korotkov KV, Gonen T, Hol WG, (2011) Secretins: dynamic channels for protein transport across membranes. Trends Biochem Sci 36: 433-443.
    • (2011) Trends Biochem Sci , vol.36 , pp. 433-443
    • Korotkov, K.V.1    Gonen, T.2    Hol, W.G.3
  • 76
    • 13444288096 scopus 로고    scopus 로고
    • Biogenesis of a putative channel protein, ComEC, required for DNA uptake: membrane topology, oligomerization and formation of disulphide bonds
    • Draskovic I, Dubnau D, (2005) Biogenesis of a putative channel protein, ComEC, required for DNA uptake: membrane topology, oligomerization and formation of disulphide bonds. Mol Microbiol 55: 881-896.
    • (2005) Mol Microbiol , vol.55 , pp. 881-896
    • Draskovic, I.1    Dubnau, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.