메뉴 건너뛰기




Volumn 55, Issue 3, 2005, Pages 881-896

Biogenesis of a putative channel protein, ComEC, required for DNA uptake: Membrane topology, oligomerization and formation of disulphide bonds

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE; MEMBRANE PROTEIN; OXIDOREDUCTASE; PROTEIN COMEC; UNCLASSIFIED DRUG;

EID: 13444288096     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2004.04430.x     Document Type: Article
Times cited : (120)

References (43)
  • 1
    • 0024444927 scopus 로고
    • Cloning and characterization of a cluster of linked Bacillus subtilis late competence mutations
    • Albano, M., and Dubnau, D.A. (1989) Cloning and characterization of a cluster of linked Bacillus subtilis late competence mutations. J Bacteriol 171: 5376-5385.
    • (1989) J Bacteriol , vol.171 , pp. 5376-5385
    • Albano, M.1    Dubnau, D.A.2
  • 2
    • 0023245333 scopus 로고
    • Expression of competence genes in Bacillus subtilis
    • Albano, M., Hahn, J., and Dubnau, D. (1987) Expression of competence genes in Bacillus subtilis. J Bacteriol 169: 3110-3117.
    • (1987) J Bacteriol , vol.169 , pp. 3110-3117
    • Albano, M.1    Hahn, J.2    Dubnau, D.3
  • 3
    • 0024429977 scopus 로고
    • Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon
    • Albano, M., Breitling, R., and Dubnau, D.A. (1989) Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon. J Bacteriol 171: 5386-5404.
    • (1989) J Bacteriol , vol.171 , pp. 5386-5404
    • Albano, M.1    Breitling, R.2    Dubnau, D.A.3
  • 4
    • 0032153131 scopus 로고    scopus 로고
    • Restricted transcription from sigma H or phosphorylated spo0A dependent promoters in the temperature-sensitive secA341 mutant of Bacillus subtilis
    • Asai, K., Fujita, M., Kawamura, F., Takahashi, H., Kobayashi, Y., and Sadaie, Y. (1998) Restricted transcription from sigma H or phosphorylated spo0A dependent promoters in the temperature-sensitive secA341 mutant of Bacillus subtilis. Biosci Biotechnol Biochem 62: 1707-1713.
    • (1998) Biosci Biotechnol Biochem , vol.62 , pp. 1707-1713
    • Asai, K.1    Fujita, M.2    Kawamura, F.3    Takahashi, H.4    Kobayashi, Y.5    Sadaie, Y.6
  • 5
    • 0036223625 scopus 로고    scopus 로고
    • Microarray analysis of the Bacillus subtilis K-state: Genome-wide expression changes dependent on ComK
    • Berka, R.M., Hahn, J., Albano, M., Draskovic, I., Persuh, M., Cui, X., et al. (2002) Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol Microbiol 43: 1331-1345.
    • (2002) Mol Microbiol , vol.43 , pp. 1331-1345
    • Berka, R.M.1    Hahn, J.2    Albano, M.3    Draskovic, I.4    Persuh, M.5    Cui, X.6
  • 6
    • 0035026419 scopus 로고    scopus 로고
    • ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity
    • Chen, I., and Gotschlich, E.G. (2001) ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity. J Bacteriol 183: 3160-3168.
    • (2001) J Bacteriol , vol.183 , pp. 3160-3168
    • Chen, I.1    Gotschlich, E.G.2
  • 7
    • 0028940060 scopus 로고
    • ComC is required for the processing and translocation of comGC, a pilin-like competence protein of Bacillus subtilis
    • Chung, Y.S., and Dubnau, D. (1995) ComC is required for the processing and translocation of comGC, a pilin-like competence protein of Bacillus subtilis. Mol Microbiol 15: 543-551.
    • (1995) Mol Microbiol , vol.15 , pp. 543-551
    • Chung, Y.S.1    Dubnau, D.2
  • 8
    • 0031973221 scopus 로고    scopus 로고
    • All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis
    • Chung, Y.S., and Dubnau, D. (1998) All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis. J Bacteriol 180: 41-45.
    • (1998) J Bacteriol , vol.180 , pp. 41-45
    • Chung, Y.S.1    Dubnau, D.2
  • 9
    • 0031950535 scopus 로고    scopus 로고
    • Cell surface localization and processing of the ComG proteins, required for DNA binding during transformation of Bacillus subtilis
    • Chung, Y.S., Breidt, F., and Dubnau, D. (1998) Cell surface localization and processing of the ComG proteins, required for DNA binding during transformation of Bacillus subtilis. Mol Microbiol 29: 905-913.
    • (1998) Mol Microbiol , vol.29 , pp. 905-913
    • Chung, Y.S.1    Breidt, F.2    Dubnau, D.3
  • 10
    • 0028568176 scopus 로고
    • TopPred II: An improved software for membrane protein structure predictions
    • Claros, M.G., and von Heijne, G. (1994) TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10: 685-686.
    • (1994) Comput Appl Biosci , vol.10 , pp. 685-686
    • Claros, M.G.1    Von Heijne, G.2
  • 11
    • 0030759333 scopus 로고    scopus 로고
    • Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method
    • Cserzo, M., Wallin, E., Simon, I., von Heijne, G., and Elofsson, A. (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 10: 673-676.
    • (1997) Protein Eng , vol.10 , pp. 673-676
    • Cserzo, M.1    Wallin, E.2    Simon, I.3    Von Heijne, G.4    Elofsson, A.5
  • 12
    • 0022530657 scopus 로고
    • Effect of stage 0 sporulation mutations on subtilisin expression
    • Ferrari, E., Howard, S.M.H., and Hoch, J. (1986) Effect of stage 0 sporulation mutations on subtilisin expression. J Bacteriol 166: 173-179.
    • (1986) J Bacteriol , vol.166 , pp. 173-179
    • Ferrari, E.1    Howard, S.M.H.2    Hoch, J.3
  • 13
    • 0028175016 scopus 로고
    • Topological 'frustration' in multispanning E. coli inner membrane proteins
    • Gafvelin, G., and von Heijne, G. (1994) Topological 'frustration' in multispanning E. coli inner membrane proteins. Cell 77: 401-412.
    • (1994) Cell , vol.77 , pp. 401-412
    • Gafvelin, G.1    Von Heijne, G.2
  • 14
    • 0034057802 scopus 로고    scopus 로고
    • Membrane topology and insertion of membrane proteins: Search for topogenic signals
    • van Geest, M., and Lolkema, J.S. (2000) Membrane topology and insertion of membrane proteins: search for topogenic signals. Microbiol Mol Biol Rev 64: 13-33.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 13-33
    • Van Geest, M.1    Lolkema, J.S.2
  • 15
    • 0023194761 scopus 로고
    • Isolation and characterization of Tn917/ac-generated competence mutants of Bacillus subtilis
    • Hahn, J., Albano, M., and Dubnau, D. (1987) Isolation and characterization of Tn917/ac-generated competence mutants of Bacillus subtilis. J Bacteriol 169: 3104-3109.
    • (1987) J Bacteriol , vol.169 , pp. 3104-3109
    • Hahn, J.1    Albano, M.2    Dubnau, D.3
  • 16
    • 0027372572 scopus 로고
    • Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA
    • Hahn, J., Inamine, G., Kozlov, Y., and Dubnau, D. (1993) Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA. Mol Microbiol 10: 99-111.
    • (1993) Mol Microbiol , vol.10 , pp. 99-111
    • Hahn, J.1    Inamine, G.2    Kozlov, Y.3    Dubnau, D.4
  • 17
    • 0037115816 scopus 로고    scopus 로고
    • Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
    • Hamoen, L.W., Smits, W.K., de Jong, A., Holsappel, S., and Kuipers, O.P. (2002) Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucleic Acids Res 30: 5517-5528.
    • (2002) Nucleic Acids Res , vol.30 , pp. 5517-5528
    • Hamoen, L.W.1    Smits, W.K.2    De Jong, A.3    Holsappel, S.4    Kuipers, O.P.5
  • 18
    • 0036774002 scopus 로고    scopus 로고
    • ABC transporters: One, two or four extracytoplasmic substrate-binding sites?
    • van der Heide, T., and Poolman, B. (2002) ABC transporters: one, two or four extracytoplasmic substrate-binding sites? EMBO Rep 3: 938-943.
    • (2002) EMBO Rep , vol.3 , pp. 938-943
    • Van Der Heide, T.1    Poolman, B.2
  • 19
    • 0026716643 scopus 로고
    • Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
    • von Heijne, G. (1992) Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol 225: 487-494.
    • (1992) J Mol Biol , vol.225 , pp. 487-494
    • Von Heijne, G.1
  • 20
    • 0000207681 scopus 로고
    • TMBASE - A database of membrane spanning protein segments
    • Hofmann, K., and Stoffel, W. (1993) TMBASE - A database of membrane spanning protein segments. Biol Chem Hoppe-Seyler 374: 166.
    • (1993) Biol Chem Hoppe-Seyler , vol.374 , pp. 166
    • Hofmann, K.1    Stoffel, W.2
  • 21
    • 0031056669 scopus 로고    scopus 로고
    • Analysis of protein structure in intact cells: Crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor
    • Hughson, A.G., Lee, G.F., and Hazelbauer, G.L. (1997) Analysis of protein structure in intact cells: crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor. Protein Sci 6: 315-322.
    • (1997) Protein Sci , vol.6 , pp. 315-322
    • Hughson, A.G.1    Lee, G.F.2    Hazelbauer, G.L.3
  • 22
    • 0029045337 scopus 로고
    • ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport
    • Inamine, G.S., and Dubnau, D. (1995) ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport. J Bacteriol 177: 3045-3051.
    • (1995) J Bacteriol , vol.177 , pp. 3045-3051
    • Inamine, G.S.1    Dubnau, D.2
  • 23
    • 0028211273 scopus 로고
    • A model recognition approach to the prediction of all-helical membrane protein structure and topology
    • Jones, D.T., Taylor, W.R., and Thornton, J.M. (1994) A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33: 3038-3049.
    • (1994) Biochemistry , vol.33 , pp. 3038-3049
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 24
    • 0036557845 scopus 로고    scopus 로고
    • Basic charge clusters and predictions of membrane protein topology
    • Juretic, D., Zoranic, L., and Zucic, D. (2002) Basic charge clusters and predictions of membrane protein topology. J Chem Inf Comput Sci 42: 620-632.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 620-632
    • Juretic, D.1    Zoranic, L.2    Zucic, D.3
  • 25
    • 0022368585 scopus 로고
    • Band 3 protein of the red cell membrane of the llama: Crosslinking and cleavage of the cytoplasmic domain
    • Khodadad, J.K., and Weinstein, R.S. (1985) Band 3 protein of the red cell membrane of the llama: crosslinking and cleavage of the cytoplasmic domain. Biochem Biophys Res Commun 130: 493-499.
    • (1985) Biochem Biophys Res Commun , vol.130 , pp. 493-499
    • Khodadad, J.K.1    Weinstein, R.S.2
  • 26
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 27
    • 0027169036 scopus 로고
    • comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases
    • Londoño-Vallejo, J.A., and Dubnau, D. (1993) comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases. Mol Microbiol 9: 119-131.
    • (1993) Mol Microbiol , vol.9 , pp. 119-131
    • Londoño-Vallejo, J.A.1    Dubnau, D.2
  • 28
    • 0030741915 scopus 로고    scopus 로고
    • Interactions of the components of the general secretion pathway: Role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion
    • Lu, H.M., Motley, ST., and Lory, S. (1997) Interactions of the components of the general secretion pathway: role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion. Mol Microbiol 25: 247-259.
    • (1997) Mol Microbiol , vol.25 , pp. 247-259
    • Lu, H.M.1    Motley, S.T.2    Lory, S.3
  • 29
    • 0025872118 scopus 로고
    • Disulfide crosslinking studies of the transmembrane regions of the aspartate sensory receptor of Escherichia coli
    • Lynch, B.A., and Koshland, D.E., Jr (1991) Disulfide crosslinking studies of the transmembrane regions of the aspartate sensory receptor of Escherichia coli. Proc Natl Acad Sci USA 88: 10402-10406.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10402-10406
    • Lynch, B.A.1    Koshland Jr., D.E.2
  • 30
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin, L.J., Bryson, K., and Jones, DT. (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 31
    • 0026047004 scopus 로고
    • Analysis of membrane protein topology using alkaline phosphatase and β-galactosidase gene fusions
    • Manoil, C. (1991) Analysis of membrane protein topology using alkaline phosphatase and β-galactosidase gene fusions. Meth Cell Biol 34: 61-75.
    • (1991) Meth Cell Biol , vol.34 , pp. 61-75
    • Manoil, C.1
  • 32
    • 0036510360 scopus 로고    scopus 로고
    • The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development
    • Meima, R., Eschevins, C., Fillinger, S., Bolhuis, A., Hamoen, L.W., Dorenbos, R., et al. (2002) The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development. J Biol Chem 277: 6994-7001.
    • (2002) J Biol Chem , vol.277 , pp. 6994-7001
    • Meima, R.1    Eschevins, C.2    Fillinger, S.3    Bolhuis, A.4    Hamoen, L.W.5    Dorenbos, R.6
  • 33
    • 0023917333 scopus 로고
    • Site-directed cross-linking. Establishing the dimeric structure of the aspartate receptor of bacterial chemotaxis
    • Milligan, D.L., and Koshland, D.E., Jr (1988) Site-directed cross-linking. Establishing the dimeric structure of the aspartate receptor of bacterial chemotaxis. J Biol Chem 263: 6268-6275.
    • (1988) J Biol Chem , vol.263 , pp. 6268-6275
    • Milligan, D.L.1    Koshland Jr., D.E.2
  • 34
    • 0024427133 scopus 로고
    • Molecular cloning and characterization of comC, a late competence gene of Bacillus subtilis
    • Mohan, S., Aghion, J., Guillen, N., and Dubnau, D. (1989) Molecular cloning and characterization of comC, a late competence gene of Bacillus subtilis. J Bacteriol 171: 6043-6051.
    • (1989) J Bacteriol , vol.171 , pp. 6043-6051
    • Mohan, S.1    Aghion, J.2    Guillen, N.3    Dubnau, D.4
  • 35
    • 0036229860 scopus 로고    scopus 로고
    • Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK
    • Ogura, M., Yamaguchi, H., Kobayashi, K., Ogasawara, N., Fujita, Y., and Tanaka, T. (2002) Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol 184: 2344-2351.
    • (2002) J Bacteriol , vol.184 , pp. 2344-2351
    • Ogura, M.1    Yamaguchi, H.2    Kobayashi, K.3    Ogasawara, N.4    Fujita, Y.5    Tanaka, T.6
  • 36
    • 0032989348 scopus 로고    scopus 로고
    • A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: The PRED-TMR algorithm
    • Pasquier, C., Promponas, V.J., Palaios, G.A., Hamodrakas, J.S., and Hamodrakas, S.J. (1999) A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm. Protein Eng 12: 381-385.
    • (1999) Protein Eng , vol.12 , pp. 381-385
    • Pasquier, C.1    Promponas, V.J.2    Palaios, G.A.3    Hamodrakas, J.S.4    Hamodrakas, S.J.5
  • 37
    • 0032791524 scopus 로고    scopus 로고
    • Mutational analysis and membrane topology of ComP, a quorum-sensing histidine kinase of Bacillus subtilis controlling competence development
    • Piazza, F., Tortosa, P., and Dubnau, D. (1999) Mutational analysis and membrane topology of ComP, a quorum-sensing histidine kinase of Bacillus subtilis controlling competence development. J Bacteriol 181: 4540-4548.
    • (1999) J Bacteriol , vol.181 , pp. 4540-4548
    • Piazza, F.1    Tortosa, P.2    Dubnau, D.3
  • 38
    • 0032896753 scopus 로고    scopus 로고
    • ComEA is a DNA receptor for transformation of competent Bacillus subtilis
    • Provvedi, R., and Dubnau, D. (1999) ComEA is a DNA receptor for transformation of competent Bacillus subtilis. Mol Microbiol 31: 271-280.
    • (1999) Mol Microbiol , vol.31 , pp. 271-280
    • Provvedi, R.1    Dubnau, D.2
  • 39
    • 0035008924 scopus 로고    scopus 로고
    • NucA is required for DNA cleavage during transformation of Bacillus subtllis
    • Provvedi, R., Chen, I., and Dubnau, D. (2001) NucA is required for DNA cleavage during transformation of Bacillus subtllis. Mol Microbiol 40: 634-644.
    • (2001) Mol Microbiol , vol.40 , pp. 634-644
    • Provvedi, R.1    Chen, I.2    Dubnau, D.3
  • 40
    • 0030765627 scopus 로고    scopus 로고
    • Making and breaking disulfide bonds
    • Raina, S., and Missiakas, D. (1997) Making and breaking disulfide bonds. Annu Rev Microbiol 51: 179-202.
    • (1997) Annu Rev Microbiol , vol.51 , pp. 179-202
    • Raina, S.1    Missiakas, D.2
  • 42
    • 0028929877 scopus 로고
    • Differential expression of two closely related deoxyribonucleases, nucA and nucB. Bacillus subtlis
    • van Sinderen, D., Kiewiet, R., and Venema, G. (1995) Differential expression of two closely related deoxyribonucleases, nucA and nucB. Bacillus subtlis. Mol Microbiol 15: 213-223.
    • (1995) Mol Microbiol , vol.15 , pp. 213-223
    • Van Sinderen, D.1    Kiewiet, R.2    Venema, G.3
  • 43
    • 0032561132 scopus 로고    scopus 로고
    • Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
    • Tusnady, G.E., and Simon, I. (1998) Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol 283: 489-506.
    • (1998) J Mol Biol , vol.283 , pp. 489-506
    • Tusnady, G.E.1    Simon, I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.