-
1
-
-
0024444927
-
Cloning and characterization of a cluster of linked Bacillus subtilis late competence mutations
-
Albano, M., and Dubnau, D.A. (1989) Cloning and characterization of a cluster of linked Bacillus subtilis late competence mutations. J Bacteriol 171: 5376-5385.
-
(1989)
J Bacteriol
, vol.171
, pp. 5376-5385
-
-
Albano, M.1
Dubnau, D.A.2
-
2
-
-
0023245333
-
Expression of competence genes in Bacillus subtilis
-
Albano, M., Hahn, J., and Dubnau, D. (1987) Expression of competence genes in Bacillus subtilis. J Bacteriol 169: 3110-3117.
-
(1987)
J Bacteriol
, vol.169
, pp. 3110-3117
-
-
Albano, M.1
Hahn, J.2
Dubnau, D.3
-
3
-
-
0024429977
-
Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon
-
Albano, M., Breitling, R., and Dubnau, D.A. (1989) Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon. J Bacteriol 171: 5386-5404.
-
(1989)
J Bacteriol
, vol.171
, pp. 5386-5404
-
-
Albano, M.1
Breitling, R.2
Dubnau, D.A.3
-
4
-
-
0032153131
-
Restricted transcription from sigma H or phosphorylated spo0A dependent promoters in the temperature-sensitive secA341 mutant of Bacillus subtilis
-
Asai, K., Fujita, M., Kawamura, F., Takahashi, H., Kobayashi, Y., and Sadaie, Y. (1998) Restricted transcription from sigma H or phosphorylated spo0A dependent promoters in the temperature-sensitive secA341 mutant of Bacillus subtilis. Biosci Biotechnol Biochem 62: 1707-1713.
-
(1998)
Biosci Biotechnol Biochem
, vol.62
, pp. 1707-1713
-
-
Asai, K.1
Fujita, M.2
Kawamura, F.3
Takahashi, H.4
Kobayashi, Y.5
Sadaie, Y.6
-
5
-
-
0036223625
-
Microarray analysis of the Bacillus subtilis K-state: Genome-wide expression changes dependent on ComK
-
Berka, R.M., Hahn, J., Albano, M., Draskovic, I., Persuh, M., Cui, X., et al. (2002) Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol Microbiol 43: 1331-1345.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1331-1345
-
-
Berka, R.M.1
Hahn, J.2
Albano, M.3
Draskovic, I.4
Persuh, M.5
Cui, X.6
-
6
-
-
0035026419
-
ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity
-
Chen, I., and Gotschlich, E.G. (2001) ComE, a competence protein from Neisseria gonorrhoeae with DNA-binding activity. J Bacteriol 183: 3160-3168.
-
(2001)
J Bacteriol
, vol.183
, pp. 3160-3168
-
-
Chen, I.1
Gotschlich, E.G.2
-
7
-
-
0028940060
-
ComC is required for the processing and translocation of comGC, a pilin-like competence protein of Bacillus subtilis
-
Chung, Y.S., and Dubnau, D. (1995) ComC is required for the processing and translocation of comGC, a pilin-like competence protein of Bacillus subtilis. Mol Microbiol 15: 543-551.
-
(1995)
Mol Microbiol
, vol.15
, pp. 543-551
-
-
Chung, Y.S.1
Dubnau, D.2
-
8
-
-
0031973221
-
All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis
-
Chung, Y.S., and Dubnau, D. (1998) All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis. J Bacteriol 180: 41-45.
-
(1998)
J Bacteriol
, vol.180
, pp. 41-45
-
-
Chung, Y.S.1
Dubnau, D.2
-
9
-
-
0031950535
-
Cell surface localization and processing of the ComG proteins, required for DNA binding during transformation of Bacillus subtilis
-
Chung, Y.S., Breidt, F., and Dubnau, D. (1998) Cell surface localization and processing of the ComG proteins, required for DNA binding during transformation of Bacillus subtilis. Mol Microbiol 29: 905-913.
-
(1998)
Mol Microbiol
, vol.29
, pp. 905-913
-
-
Chung, Y.S.1
Breidt, F.2
Dubnau, D.3
-
10
-
-
0028568176
-
TopPred II: An improved software for membrane protein structure predictions
-
Claros, M.G., and von Heijne, G. (1994) TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10: 685-686.
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 685-686
-
-
Claros, M.G.1
Von Heijne, G.2
-
11
-
-
0030759333
-
Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method
-
Cserzo, M., Wallin, E., Simon, I., von Heijne, G., and Elofsson, A. (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 10: 673-676.
-
(1997)
Protein Eng
, vol.10
, pp. 673-676
-
-
Cserzo, M.1
Wallin, E.2
Simon, I.3
Von Heijne, G.4
Elofsson, A.5
-
12
-
-
0022530657
-
Effect of stage 0 sporulation mutations on subtilisin expression
-
Ferrari, E., Howard, S.M.H., and Hoch, J. (1986) Effect of stage 0 sporulation mutations on subtilisin expression. J Bacteriol 166: 173-179.
-
(1986)
J Bacteriol
, vol.166
, pp. 173-179
-
-
Ferrari, E.1
Howard, S.M.H.2
Hoch, J.3
-
13
-
-
0028175016
-
Topological 'frustration' in multispanning E. coli inner membrane proteins
-
Gafvelin, G., and von Heijne, G. (1994) Topological 'frustration' in multispanning E. coli inner membrane proteins. Cell 77: 401-412.
-
(1994)
Cell
, vol.77
, pp. 401-412
-
-
Gafvelin, G.1
Von Heijne, G.2
-
14
-
-
0034057802
-
Membrane topology and insertion of membrane proteins: Search for topogenic signals
-
van Geest, M., and Lolkema, J.S. (2000) Membrane topology and insertion of membrane proteins: search for topogenic signals. Microbiol Mol Biol Rev 64: 13-33.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 13-33
-
-
Van Geest, M.1
Lolkema, J.S.2
-
15
-
-
0023194761
-
Isolation and characterization of Tn917/ac-generated competence mutants of Bacillus subtilis
-
Hahn, J., Albano, M., and Dubnau, D. (1987) Isolation and characterization of Tn917/ac-generated competence mutants of Bacillus subtilis. J Bacteriol 169: 3104-3109.
-
(1987)
J Bacteriol
, vol.169
, pp. 3104-3109
-
-
Hahn, J.1
Albano, M.2
Dubnau, D.3
-
16
-
-
0027372572
-
Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA
-
Hahn, J., Inamine, G., Kozlov, Y., and Dubnau, D. (1993) Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA. Mol Microbiol 10: 99-111.
-
(1993)
Mol Microbiol
, vol.10
, pp. 99-111
-
-
Hahn, J.1
Inamine, G.2
Kozlov, Y.3
Dubnau, D.4
-
17
-
-
0037115816
-
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
-
Hamoen, L.W., Smits, W.K., de Jong, A., Holsappel, S., and Kuipers, O.P. (2002) Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucleic Acids Res 30: 5517-5528.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5517-5528
-
-
Hamoen, L.W.1
Smits, W.K.2
De Jong, A.3
Holsappel, S.4
Kuipers, O.P.5
-
18
-
-
0036774002
-
ABC transporters: One, two or four extracytoplasmic substrate-binding sites?
-
van der Heide, T., and Poolman, B. (2002) ABC transporters: one, two or four extracytoplasmic substrate-binding sites? EMBO Rep 3: 938-943.
-
(2002)
EMBO Rep
, vol.3
, pp. 938-943
-
-
Van Der Heide, T.1
Poolman, B.2
-
19
-
-
0026716643
-
Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
-
von Heijne, G. (1992) Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol 225: 487-494.
-
(1992)
J Mol Biol
, vol.225
, pp. 487-494
-
-
Von Heijne, G.1
-
20
-
-
0000207681
-
TMBASE - A database of membrane spanning protein segments
-
Hofmann, K., and Stoffel, W. (1993) TMBASE - A database of membrane spanning protein segments. Biol Chem Hoppe-Seyler 374: 166.
-
(1993)
Biol Chem Hoppe-Seyler
, vol.374
, pp. 166
-
-
Hofmann, K.1
Stoffel, W.2
-
21
-
-
0031056669
-
Analysis of protein structure in intact cells: Crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor
-
Hughson, A.G., Lee, G.F., and Hazelbauer, G.L. (1997) Analysis of protein structure in intact cells: crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor. Protein Sci 6: 315-322.
-
(1997)
Protein Sci
, vol.6
, pp. 315-322
-
-
Hughson, A.G.1
Lee, G.F.2
Hazelbauer, G.L.3
-
22
-
-
0029045337
-
ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport
-
Inamine, G.S., and Dubnau, D. (1995) ComEA, a Bacillus subtilis integral membrane protein required for genetic transformation, is needed for both DNA binding and transport. J Bacteriol 177: 3045-3051.
-
(1995)
J Bacteriol
, vol.177
, pp. 3045-3051
-
-
Inamine, G.S.1
Dubnau, D.2
-
23
-
-
0028211273
-
A model recognition approach to the prediction of all-helical membrane protein structure and topology
-
Jones, D.T., Taylor, W.R., and Thornton, J.M. (1994) A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33: 3038-3049.
-
(1994)
Biochemistry
, vol.33
, pp. 3038-3049
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
24
-
-
0036557845
-
Basic charge clusters and predictions of membrane protein topology
-
Juretic, D., Zoranic, L., and Zucic, D. (2002) Basic charge clusters and predictions of membrane protein topology. J Chem Inf Comput Sci 42: 620-632.
-
(2002)
J Chem Inf Comput Sci
, vol.42
, pp. 620-632
-
-
Juretic, D.1
Zoranic, L.2
Zucic, D.3
-
25
-
-
0022368585
-
Band 3 protein of the red cell membrane of the llama: Crosslinking and cleavage of the cytoplasmic domain
-
Khodadad, J.K., and Weinstein, R.S. (1985) Band 3 protein of the red cell membrane of the llama: crosslinking and cleavage of the cytoplasmic domain. Biochem Biophys Res Commun 130: 493-499.
-
(1985)
Biochem Biophys Res Commun
, vol.130
, pp. 493-499
-
-
Khodadad, J.K.1
Weinstein, R.S.2
-
26
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
27
-
-
0027169036
-
comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases
-
Londoño-Vallejo, J.A., and Dubnau, D. (1993) comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases. Mol Microbiol 9: 119-131.
-
(1993)
Mol Microbiol
, vol.9
, pp. 119-131
-
-
Londoño-Vallejo, J.A.1
Dubnau, D.2
-
28
-
-
0030741915
-
Interactions of the components of the general secretion pathway: Role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion
-
Lu, H.M., Motley, ST., and Lory, S. (1997) Interactions of the components of the general secretion pathway: role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion. Mol Microbiol 25: 247-259.
-
(1997)
Mol Microbiol
, vol.25
, pp. 247-259
-
-
Lu, H.M.1
Motley, S.T.2
Lory, S.3
-
29
-
-
0025872118
-
Disulfide crosslinking studies of the transmembrane regions of the aspartate sensory receptor of Escherichia coli
-
Lynch, B.A., and Koshland, D.E., Jr (1991) Disulfide crosslinking studies of the transmembrane regions of the aspartate sensory receptor of Escherichia coli. Proc Natl Acad Sci USA 88: 10402-10406.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 10402-10406
-
-
Lynch, B.A.1
Koshland Jr., D.E.2
-
30
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin, L.J., Bryson, K., and Jones, DT. (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
31
-
-
0026047004
-
Analysis of membrane protein topology using alkaline phosphatase and β-galactosidase gene fusions
-
Manoil, C. (1991) Analysis of membrane protein topology using alkaline phosphatase and β-galactosidase gene fusions. Meth Cell Biol 34: 61-75.
-
(1991)
Meth Cell Biol
, vol.34
, pp. 61-75
-
-
Manoil, C.1
-
32
-
-
0036510360
-
The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development
-
Meima, R., Eschevins, C., Fillinger, S., Bolhuis, A., Hamoen, L.W., Dorenbos, R., et al. (2002) The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development. J Biol Chem 277: 6994-7001.
-
(2002)
J Biol Chem
, vol.277
, pp. 6994-7001
-
-
Meima, R.1
Eschevins, C.2
Fillinger, S.3
Bolhuis, A.4
Hamoen, L.W.5
Dorenbos, R.6
-
33
-
-
0023917333
-
Site-directed cross-linking. Establishing the dimeric structure of the aspartate receptor of bacterial chemotaxis
-
Milligan, D.L., and Koshland, D.E., Jr (1988) Site-directed cross-linking. Establishing the dimeric structure of the aspartate receptor of bacterial chemotaxis. J Biol Chem 263: 6268-6275.
-
(1988)
J Biol Chem
, vol.263
, pp. 6268-6275
-
-
Milligan, D.L.1
Koshland Jr., D.E.2
-
34
-
-
0024427133
-
Molecular cloning and characterization of comC, a late competence gene of Bacillus subtilis
-
Mohan, S., Aghion, J., Guillen, N., and Dubnau, D. (1989) Molecular cloning and characterization of comC, a late competence gene of Bacillus subtilis. J Bacteriol 171: 6043-6051.
-
(1989)
J Bacteriol
, vol.171
, pp. 6043-6051
-
-
Mohan, S.1
Aghion, J.2
Guillen, N.3
Dubnau, D.4
-
35
-
-
0036229860
-
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK
-
Ogura, M., Yamaguchi, H., Kobayashi, K., Ogasawara, N., Fujita, Y., and Tanaka, T. (2002) Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol 184: 2344-2351.
-
(2002)
J Bacteriol
, vol.184
, pp. 2344-2351
-
-
Ogura, M.1
Yamaguchi, H.2
Kobayashi, K.3
Ogasawara, N.4
Fujita, Y.5
Tanaka, T.6
-
36
-
-
0032989348
-
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: The PRED-TMR algorithm
-
Pasquier, C., Promponas, V.J., Palaios, G.A., Hamodrakas, J.S., and Hamodrakas, S.J. (1999) A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm. Protein Eng 12: 381-385.
-
(1999)
Protein Eng
, vol.12
, pp. 381-385
-
-
Pasquier, C.1
Promponas, V.J.2
Palaios, G.A.3
Hamodrakas, J.S.4
Hamodrakas, S.J.5
-
37
-
-
0032791524
-
Mutational analysis and membrane topology of ComP, a quorum-sensing histidine kinase of Bacillus subtilis controlling competence development
-
Piazza, F., Tortosa, P., and Dubnau, D. (1999) Mutational analysis and membrane topology of ComP, a quorum-sensing histidine kinase of Bacillus subtilis controlling competence development. J Bacteriol 181: 4540-4548.
-
(1999)
J Bacteriol
, vol.181
, pp. 4540-4548
-
-
Piazza, F.1
Tortosa, P.2
Dubnau, D.3
-
38
-
-
0032896753
-
ComEA is a DNA receptor for transformation of competent Bacillus subtilis
-
Provvedi, R., and Dubnau, D. (1999) ComEA is a DNA receptor for transformation of competent Bacillus subtilis. Mol Microbiol 31: 271-280.
-
(1999)
Mol Microbiol
, vol.31
, pp. 271-280
-
-
Provvedi, R.1
Dubnau, D.2
-
39
-
-
0035008924
-
NucA is required for DNA cleavage during transformation of Bacillus subtllis
-
Provvedi, R., Chen, I., and Dubnau, D. (2001) NucA is required for DNA cleavage during transformation of Bacillus subtllis. Mol Microbiol 40: 634-644.
-
(2001)
Mol Microbiol
, vol.40
, pp. 634-644
-
-
Provvedi, R.1
Chen, I.2
Dubnau, D.3
-
40
-
-
0030765627
-
Making and breaking disulfide bonds
-
Raina, S., and Missiakas, D. (1997) Making and breaking disulfide bonds. Annu Rev Microbiol 51: 179-202.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 179-202
-
-
Raina, S.1
Missiakas, D.2
-
41
-
-
0025005439
-
Amphipathic helix motif: Classes and properties
-
Segrest, J.P., De Loof, H., Dohlman, J.G., Brouillette, C.G., and Anantharamaiah, G.M. (1990) Amphipathic helix motif: classes and properties. Proteins 8:103-117.
-
(1990)
Proteins
, vol.8
, pp. 103-117
-
-
Segrest, J.P.1
De Loof, H.2
Dohlman, J.G.3
Brouillette, C.G.4
Anantharamaiah, G.M.5
-
42
-
-
0028929877
-
Differential expression of two closely related deoxyribonucleases, nucA and nucB. Bacillus subtlis
-
van Sinderen, D., Kiewiet, R., and Venema, G. (1995) Differential expression of two closely related deoxyribonucleases, nucA and nucB. Bacillus subtlis. Mol Microbiol 15: 213-223.
-
(1995)
Mol Microbiol
, vol.15
, pp. 213-223
-
-
Van Sinderen, D.1
Kiewiet, R.2
Venema, G.3
-
43
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
-
Tusnady, G.E., and Simon, I. (1998) Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol 283: 489-506.
-
(1998)
J Mol Biol
, vol.283
, pp. 489-506
-
-
Tusnady, G.E.1
Simon, I.2
|