-
1
-
-
0036884167
-
The use and analysis of microarray data
-
Butte A (2002) The use and analysis of microarray data. Nat Rev Drug Discov 1: 951-960.
-
(2002)
Nat Rev Drug Discov
, vol.1
, pp. 951-960
-
-
Butte, A.1
-
2
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
-
3
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang CH, et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci U S A 98: 15149-15154.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, C.H.5
-
4
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
Dupuy A, Simon RM (2007) Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 99: 147-157.
-
(2007)
J Natl Cancer Inst
, vol.99
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.M.2
-
5
-
-
33750727368
-
Genomic signatures to guide the use of chemotherapeutics
-
Potti A, Dressman HK, Bild A, Riedel RF, Chan G, et al. (2006) Genomic signatures to guide the use of chemotherapeutics. Nat Med 12: 1294-1300.
-
(2006)
Nat Med
, vol.12
, pp. 1294-1300
-
-
Potti, A.1
Dressman, H.K.2
Bild, A.3
Riedel, R.F.4
Chan, G.5
-
6
-
-
0031730097
-
Drug target validation and identification of secondary drug target effects using DNA microarrays
-
Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, et al. (1998) Drug target validation and identification of secondary drug target effects using DNA microarrays. Nat Med 4: 1293-1301.
-
(1998)
Nat Med
, vol.4
, pp. 1293-1301
-
-
Marton, M.J.1
DeRisi, J.L.2
Bennett, H.A.3
Iyer, V.R.4
Meyer, M.R.5
-
7
-
-
32944470084
-
Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells
-
Burczynski ME, Peterson RL, Twine NC, Zuberek KA, Brodeur BJ, et al. (2006) Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells. J Mol Diagn 8: 51-61.
-
(2006)
J Mol Diagn
, vol.8
, pp. 51-61
-
-
Burczynski, M.E.1
Peterson, R.L.2
Twine, N.C.3
Zuberek, K.A.4
Brodeur, B.J.5
-
8
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh EJ, Ross ME, Shurtleff SA, Williams WK, Patel D, et al. (2002) Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1: 133-143.
-
(2002)
Cancer Cell
, vol.1
, pp. 133-143
-
-
Yeoh, E.J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
-
9
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
-
10
-
-
18244389201
-
Standardizing global gene expression analysis between laboratories and across platforms
-
Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, et al. (2005) Standardizing global gene expression analysis between laboratories and across platforms. Nat Methods 2: 351-356.
-
(2005)
Nat Methods
, vol.2
, pp. 351-356
-
-
Bammler, T.1
Beyer, R.P.2
Bhattacharya, S.3
Boorman, G.A.4
Boyles, A.5
-
11
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, et al. (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24: 1151-1161.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
-
13
-
-
0035991757
-
A paradigm for class prediction using gene expression profiles
-
Radmacher MD, McShane LM, Simon R (2002) A paradigm for class prediction using gene expression profiles. J Comput Biol 9: 505-511.
-
(2002)
J Comput Biol
, vol.9
, pp. 505-511
-
-
Radmacher, M.D.1
McShane, L.M.2
Simon, R.3
-
16
-
-
0037114470
-
Power and sample size for DNA microarray studies
-
Lee ML, Whitmore GA (2002) Power and sample size for DNA microarray studies. Stat Med 21: 3543-3570.
-
(2002)
Stat Med
, vol.21
, pp. 3543-3570
-
-
Lee, M.L.1
Whitmore, G.A.2
-
18
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, et al. (2002) Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med 8: 816-824.
-
(2002)
Nat Med
, vol.8
, pp. 816-824
-
-
Beer, D.G.1
Kardia, S.L.2
Huang, C.C.3
Giordano, T.J.4
Levin, A.M.5
-
19
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee A, Richards WG, Staunton J, Li C, Monti S, et al. (2001) Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc Natl Acad Sci U S A 98: 13790-13795.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
-
20
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, et al. (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346: 1937-1947.
-
(2002)
N Engl J Med
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
-
21
-
-
0037443891
-
Oligonucleotide microarray for prediction of early intrahepatic recurrence of hepatocellular carcinoma after curative resection
-
Iizuka N, Oka M, Yamada-Okabe H, Nishida M, Maeda Y, et al. (2003) Oligonucleotide microarray for prediction of early intrahepatic recurrence of hepatocellular carcinoma after curative resection. Lancet 361: 923-929.
-
(2003)
Lancet
, vol.361
, pp. 923-929
-
-
Iizuka, N.1
Oka, M.2
Yamada-Okabe, H.3
Nishida, M.4
Maeda, Y.5
-
22
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, et al. (2002) Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415: 436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
-
23
-
-
13444249852
-
Prediction of cancer outcome with microarrays: A multiple random validation strategy
-
Michiels S, Koscielny S, Hill C (2005) Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 365: 488-492.
-
(2005)
Lancet
, vol.365
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
24
-
-
33751193656
-
Converting a breast cancer microarray signature into a high-throughput diagnostic test
-
Glas AM, Floore A, Delahaye LJ, Witteveen AT, Pover RC, et al. (2006) Converting a breast cancer microarray signature into a high-throughput diagnostic test. BMC Genomics 7: 278.
-
(2006)
BMC Genomics
, vol.7
, pp. 278
-
-
Glas, A.M.1
Floore, A.2
Delahaye, L.J.3
Witteveen, A.T.4
Pover, R.C.5
-
25
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
Ein-Dor L, Zuk O, Domany E (2006) Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc Natl Acad Sci U S A 103: 5923-5928.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
26
-
-
13444304216
-
Microarrays and molecular research: Noise discovery?
-
Ioannidis JP (2005) Microarrays and molecular research: noise discovery? Lancet 365: 454-455.
-
(2005)
Lancet
, vol.365
, pp. 454-455
-
-
Ioannidis, J.P.1
-
27
-
-
0030069896
-
Multivariable prognostic models: Issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors
-
Harrell FE Jr, Lee KL, Mark DB (1996) Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors. Stat Med 15: 361-387.
-
(1996)
Stat Med
, vol.15
, pp. 361-387
-
-
Harrell Jr, F.E.1
Lee, K.L.2
Mark, D.B.3
-
28
-
-
0034368344
-
Should the Median Test be Retired from General Use?
-
Freidlin B, Gastwirth JL (2000) Should the Median Test be Retired from General Use? The American Statistician 54: 161-164.
-
(2000)
The American Statistician
, vol.54
, pp. 161-164
-
-
Freidlin, B.1
Gastwirth, J.L.2
-
31
-
-
15844413351
-
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
-
Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S (2005) A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics 21: 631-643.
-
(2005)
Bioinformatics
, vol.21
, pp. 631-643
-
-
Statnikov, A.1
Aliferis, C.F.2
Tsamardinos, I.3
Hardin, D.4
Levy, S.5
-
32
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey TS, Cristianini N, Duffy N, Bednarski DW, Schummer M, et al. (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16: 906-914.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Schummer, M.5
-
33
-
-
48549094895
-
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
-
Statnikov A, Wang L, Aliferis CF (2008) A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification. BMC Bioinformatics 9: 319.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 319
-
-
Statnikov, A.1
Wang, L.2
Aliferis, C.F.3
-
36
-
-
1342330535
-
Is cross-validation valid for small-sample microarray classification?
-
Braga-Neto UM, Dougherty ER (2004) Is cross-validation valid for small-sample microarray classification? Bioinformatics 20: 374-380.
-
(2004)
Bioinformatics
, vol.20
, pp. 374-380
-
-
Braga-Neto, U.M.1
Dougherty, E.R.2
-
37
-
-
0036134369
-
Adjusting the Outputs of a Classifier to New a Priori Probabilities: A Simple Procedure
-
Saerens M, Latinne P, Decaestecker C (2001) Adjusting the Outputs of a Classifier to New a Priori Probabilities: A Simple Procedure. Neural Computation 14: 21-41.
-
(2001)
Neural Computation
, vol.14
, pp. 21-41
-
-
Saerens, M.1
Latinne, P.2
Decaestecker, C.3
-
38
-
-
37349009294
-
A comparison of bootstrap methods and an adjusted bootstrap approach for estimating the prediction error in microarray classification
-
Jiang W, Simon R (2007) A comparison of bootstrap methods and an adjusted bootstrap approach for estimating the prediction error in microarray classification. Stat Med 26: 5320-5334.
-
(2007)
Stat Med
, vol.26
, pp. 5320-5334
-
-
Jiang, W.1
Simon, R.2
-
39
-
-
33744808550
-
A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients
-
Habel LA, Shak S, Jacobs MK, Capra A, Alexander C, et al. (2006) A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients. Breast Cancer Res 8: R25.
-
(2006)
Breast Cancer Res
, vol.8
-
-
Habel, L.A.1
Shak, S.2
Jacobs, M.K.3
Capra, A.4
Alexander, C.5
-
40
-
-
19944422061
-
A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
-
Paik S, Shak S, Tang G, Kim C, Baker J, et al. (2004) A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med 351: 2817-2826.
-
(2004)
N Engl J Med
, vol.351
, pp. 2817-2826
-
-
Paik, S.1
Shak, S.2
Tang, G.3
Kim, C.4
Baker, J.5
-
41
-
-
33744814477
-
Gene expression and benefit of chemotherapy in women with node-negative, estrogen receptor-positive breast cancer
-
Paik S, Tang G, Shak S, Kim C, Baker J, et al. (2006) Gene expression and benefit of chemotherapy in women with node-negative, estrogen receptor-positive breast cancer. J Clin Oncol 24: 3726-3734.
-
(2006)
J Clin Oncol
, vol.24
, pp. 3726-3734
-
-
Paik, S.1
Tang, G.2
Shak, S.3
Kim, C.4
Baker, J.5
-
42
-
-
39149113165
-
Development of the 21-gene assay and its application in clinical practice and clinical trials
-
Sparano JA, Paik S (2008) Development of the 21-gene assay and its application in clinical practice and clinical trials. J Clin Oncol 26: 721-728.
-
(2008)
J Clin Oncol
, vol.26
, pp. 721-728
-
-
Sparano, J.A.1
Paik, S.2
-
43
-
-
22544475586
-
GEMS: A system for automated cancer diagnosis and biomarker discovery from microarray gene expression data
-
Statnikov A, Tsamardinos I, Dosbayev Y, Aliferis CF (2005) GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data. Int J Med Inform 74: 491-503.
-
(2005)
Int J Med Inform
, vol.74
, pp. 491-503
-
-
Statnikov, A.1
Tsamardinos, I.2
Dosbayev, Y.3
Aliferis, C.F.4
-
44
-
-
40749107034
-
How large a training set is needed to develop a classifier for microarray data?
-
Dobbin KK, Zhao Y, Simon RM (2008) How large a training set is needed to develop a classifier for microarray data? Clin Cancer Res 14: 108-114.
-
(2008)
Clin Cancer Res
, vol.14
, pp. 108-114
-
-
Dobbin, K.K.1
Zhao, Y.2
Simon, R.M.3
-
45
-
-
33845404310
-
Sample size planning for developing classifiers using high-dimensional DNA microarray data
-
Dobbin KK, Simon RM (2007) Sample size planning for developing classifiers using high-dimensional DNA microarray data. Biostatistics 8: 101-117.
-
(2007)
Biostatistics
, vol.8
, pp. 101-117
-
-
Dobbin, K.K.1
Simon, R.M.2
-
46
-
-
0003562954
-
A simple generalisation of the area under the ROC curve for multiple class classification problems
-
Hand DJ, Till RJ (2001) A simple generalisation of the area under the ROC curve for multiple class classification problems. Machine Learning 45: 171-186.
-
(2001)
Machine Learning
, vol.45
, pp. 171-186
-
-
Hand, D.J.1
Till, R.J.2
-
47
-
-
0344441000
-
Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data
-
Simon R (2003) Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data. Br J Cancer 89: 1599-1604.
-
(2003)
Br J Cancer
, vol.89
, pp. 1599-1604
-
-
Simon, R.1
-
48
-
-
29144499905
-
Working set selection using second order information for training support vector machines
-
Fan RE, Chen PH, Lin CJ (2005) Working set selection using second order information for training support vector machines. Journal of Machine Learning Research 6: 1918.
-
(2005)
Journal of Machine Learning Research
, vol.6
, pp. 1918
-
-
Fan, R.E.1
Chen, P.H.2
Lin, C.J.3
-
50
-
-
33748955151
-
Challenges in the analysis of mass-throughput data: A technical commentary from the statistical machine learning perspective
-
Aliferis CF, Statnikov A, Tsamardinos I (2006) Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective. Cancer Informatics 2: 133-162.
-
(2006)
Cancer Informatics
, vol.2
, pp. 133-162
-
-
Aliferis, C.F.1
Statnikov, A.2
Tsamardinos, I.3
|