-
2
-
-
28444479853
-
An assembly landscape for the 30S ribosomal subunit
-
Talkington, M. W., Siuzdak, G., and Williamson, J. R. (2005) An assembly landscape for the 30S ribosomal subunit Nature 438, 628-632
-
(2005)
Nature
, vol.438
, pp. 628-632
-
-
Talkington, M.W.1
Siuzdak, G.2
Williamson, J.R.3
-
3
-
-
2442641641
-
A conformational switch controls hepatitis delta virus ribozyme catalysis
-
Ke, A., Zhou, K., Ding, F., Cate, J. H., and Doudna, J. A. (2004) A conformational switch controls hepatitis delta virus ribozyme catalysis Nature 429, 201-205
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.H.4
Doudna, J.A.5
-
4
-
-
80052982281
-
The dynamic nature of RNA as key to understanding riboswitch mechanisms
-
Haller, A., Souliere, M. F., and Micura, R. (2011) The dynamic nature of RNA as key to understanding riboswitch mechanisms Acc. Chem. Res. 44, 1339-1348
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1339-1348
-
-
Haller, A.1
Souliere, M.F.2
Micura, R.3
-
5
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag, D. (1995) RNA chaperones and the RNA folding problem J. Biol. Chem. 270, 20871-20874
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
6
-
-
78751676793
-
Roles of DEAD-box proteins in RNA and RNP folding
-
Pan, C. and Russell, R. (2010) Roles of DEAD-box proteins in RNA and RNP folding RNA Biol. 7, 28-37
-
(2010)
RNA Biol.
, vol.7
, pp. 28-37
-
-
Pan, C.1
Russell, R.2
-
7
-
-
0037102582
-
RNA molecules with structure dependent functions are uniquely folded
-
Le, S. Y., Zhang, K., and Maizel, J. V., Jr. (2002) RNA molecules with structure dependent functions are uniquely folded Nucleic Acids Res. 30, 3574-3582
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3574-3582
-
-
Le, S.Y.1
Zhang, K.2
Maizel Jr., J.V.3
-
8
-
-
22544466402
-
Protein-independent folding pathway of the 16S rRNA 5′ domain
-
Adilakshmi, T., Ramaswamy, P., and Woodson, S. A. (2005) Protein-independent folding pathway of the 16S rRNA 5′ domain J. Mol. Biol. 351, 508-519
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 508-519
-
-
Adilakshmi, T.1
Ramaswamy, P.2
Woodson, S.A.3
-
9
-
-
84857080591
-
Functional complexity and regulation through RNA dynamics
-
Dethoff, E. A., Chugh, J., Mustoe, A. M., and Al-Hashimi, H. M. (2012) Functional complexity and regulation through RNA dynamics Nature 482, 322-330
-
(2012)
Nature
, vol.482
, pp. 322-330
-
-
Dethoff, E.A.1
Chugh, J.2
Mustoe, A.M.3
Al-Hashimi, H.M.4
-
10
-
-
33749032381
-
Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures
-
Grilley, D., Soto, A. M., and Draper, D. E. (2006) Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures Proc. Natl. Acad. Sci. U.S.A. 103, 14003-14008
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 14003-14008
-
-
Grilley, D.1
Soto, A.M.2
Draper, D.E.3
-
11
-
-
0038508653
-
RNA folding: Models and perspectives
-
Sosnick, T. R. and Pan, T. (2003) RNA folding: models and perspectives Curr. Opin. Struct. Biol. 13, 309-316
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 309-316
-
-
Sosnick, T.R.1
Pan, T.2
-
12
-
-
0033065083
-
Magnesium-dependent folding of self-splicing RNA: Exploring the link between cooperativity, thermodynamics, and kinetics
-
Pan, J., Thirumalai, D., and Woodson, S. A. (1999) Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics Proc. Natl. Acad. Sci. U.S.A. 96, 6149-6154
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 6149-6154
-
-
Pan, J.1
Thirumalai, D.2
Woodson, S.A.3
-
13
-
-
0025963132
-
Visualizing the higher order folding of a catalytic RNA molecule
-
Celander, D. W. and Cech, T. R. (1991) Visualizing the higher order folding of a catalytic RNA molecule Science 251, 401-407
-
(1991)
Science
, vol.251
, pp. 401-407
-
-
Celander, D.W.1
Cech, T.R.2
-
14
-
-
67449104206
-
Advances in RNA structure prediction from sequence: New tools for generating hypotheses about viral RNA structure-function relationships
-
Schroeder, S. J. (2009) Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships J. Virol. 83, 6326-6334
-
(2009)
J. Virol.
, vol.83
, pp. 6326-6334
-
-
Schroeder, S.J.1
-
15
-
-
20444496846
-
Determining the Mg2+ stoichiometry for folding an RNA metal ion core
-
Das, R., Travers, K. J., Bai, Y., and Herschlag, D. (2005) Determining the Mg2+ stoichiometry for folding an RNA metal ion core J. Am. Chem. Soc. 127, 8272-8273
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 8272-8273
-
-
Das, R.1
Travers, K.J.2
Bai, Y.3
Herschlag, D.4
-
16
-
-
77749286433
-
Dependence of RNA tertiary structural stability on Mg2+ concentration: Interpretation of the Hill equation and coefficient
-
Leipply, D. and Draper, D. E. (2010) Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient Biochemistry 49, 1843-1853
-
(2010)
Biochemistry
, vol.49
, pp. 1843-1853
-
-
Leipply, D.1
Draper, D.E.2
-
17
-
-
0035836722
-
The thermodynamic origin of the stability of a thermophilic ribozyme
-
Fang, X. W., Golden, B. L., Littrell, K., Shelton, V., Thiyagarajan, P., Pan, T., and Sosnick, T. R. (2001) The thermodynamic origin of the stability of a thermophilic ribozyme Proc. Natl. Acad. Sci. U.S.A. 98, 4355-4360
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4355-4360
-
-
Fang, X.W.1
Golden, B.L.2
Littrell, K.3
Shelton, V.4
Thiyagarajan, P.5
Pan, T.6
Sosnick, T.R.7
-
18
-
-
22544439312
-
Structural specificity conferred by a group I RNA peripheral element
-
Johnson, T. H., Tijerina, P., Chadee, A. B., Herschlag, D., and Russell, R. (2005) Structural specificity conferred by a group I RNA peripheral element Proc. Natl. Acad. Sci. U.S.A. 102, 10176-10181
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 10176-10181
-
-
Johnson, T.H.1
Tijerina, P.2
Chadee, A.B.3
Herschlag, D.4
Russell, R.5
-
19
-
-
0029958503
-
Slow folding kinetics of RNase P RNA
-
Zarrinkar, P. P., Wang, J., and Williamson, J. R. (1996) Slow folding kinetics of RNase P RNA RNA 2, 564-573
-
(1996)
RNA
, vol.2
, pp. 564-573
-
-
Zarrinkar, P.P.1
Wang, J.2
Williamson, J.R.3
-
20
-
-
33748936120
-
The paradoxical behavior of a highly structured misfolded intermediate in RNA folding
-
Russell, R., Das, R., Suh, H., Travers, K. J., Laederach, A., Engelhardt, M. A., and Herschlag, D. (2006) The paradoxical behavior of a highly structured misfolded intermediate in RNA folding J. Mol. Biol. 363, 531-544
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 531-544
-
-
Russell, R.1
Das, R.2
Suh, H.3
Travers, K.J.4
Laederach, A.5
Engelhardt, M.A.6
Herschlag, D.7
-
21
-
-
46849113841
-
Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain
-
McCully, M. E., Beck, D. A., and Daggett, V. (2008) Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain Biochemistry 47, 7079-7089
-
(2008)
Biochemistry
, vol.47
, pp. 7079-7089
-
-
McCully, M.E.1
Beck, D.A.2
Daggett, V.3
-
22
-
-
0013901577
-
Two interconvertible forms of tryptophanyl sRNA in E coli
-
Gartland, W. J. and Sueoka, N. (1966) Two interconvertible forms of tryptophanyl sRNA in E. coli Proc. Natl. Acad. Sci. U.S.A. 55, 948-956
-
(1966)
Proc. Natl. Acad. Sci. U.S.A.
, vol.55
, pp. 948-956
-
-
Gartland, W.J.1
Sueoka, N.2
-
23
-
-
0015497428
-
Conformational changes of transfer ribonucleic acid. Relaxation kinetics of the early melting transition of methionine transfer ribonucleic acid (Escherichia coli)
-
Cole, P. E. and Crothers, D. M. (1972) Conformational changes of transfer ribonucleic acid. Relaxation kinetics of the early melting transition of methionine transfer ribonucleic acid (Escherichia coli) Biochemistry 11, 4368-4374
-
(1972)
Biochemistry
, vol.11
, pp. 4368-4374
-
-
Cole, P.E.1
Crothers, D.M.2
-
24
-
-
0015497450
-
Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams
-
Cole, P. E., Yang, S. K., and Crothers, D. M. (1972) Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams Biochemistry 11, 4358-4368
-
(1972)
Biochemistry
, vol.11
, pp. 4358-4368
-
-
Cole, P.E.1
Yang, S.K.2
Crothers, D.M.3
-
25
-
-
0014330388
-
Rearrangement of the conformation of Escherichia coli 5S RNA
-
Aubert, M., Scott, J. F., Reynier, M., and Monier, R. (1968) Rearrangement of the conformation of Escherichia coli 5S RNA Proc. Natl. Acad. Sci. U.S.A. 61, 292-299
-
(1968)
Proc. Natl. Acad. Sci. U.S.A.
, vol.61
, pp. 292-299
-
-
Aubert, M.1
Scott, J.F.2
Reynier, M.3
Monier, R.4
-
26
-
-
0017745570
-
Pathway-dependent refolding of E coli 5S RNA
-
Weidner, H. and Crothers, D. M. (1977) Pathway-dependent refolding of E. coli 5S RNA Nucleic Acids Res. 4, 3401-3414
-
(1977)
Nucleic Acids Res.
, vol.4
, pp. 3401-3414
-
-
Weidner, H.1
Crothers, D.M.2
-
27
-
-
0017604507
-
Does 5S RNA function by a switch between two secondary structures?
-
Weidner, H., Yuan, R., and Crothers, D. M. (1977) Does 5S RNA function by a switch between two secondary structures? Nature 266, 193-194
-
(1977)
Nature
, vol.266
, pp. 193-194
-
-
Weidner, H.1
Yuan, R.2
Crothers, D.M.3
-
28
-
-
17144441957
-
On secondary structure rearrangements and equilibria of small RNAs
-
Micura, R. and Hobartner, C. (2003) On secondary structure rearrangements and equilibria of small RNAs ChemBioChem 4, 984-990
-
(2003)
ChemBioChem
, vol.4
, pp. 984-990
-
-
Micura, R.1
Hobartner, C.2
-
30
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
Zhuang, X., Bartley, L. E., Babcock, H. P., Russell, R., Ha, T., Herschlag, D., and Chu, S. (2000) A single-molecule study of RNA catalysis and folding Science 288, 2048-2051
-
(2000)
Science
, vol.288
, pp. 2048-2051
-
-
Zhuang, X.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.5
Herschlag, D.6
Chu, S.7
-
31
-
-
0041972623
-
2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core
-
2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core Biochemistry 42, 9924-9936
-
(2003)
Biochemistry
, vol.42
, pp. 9924-9936
-
-
Rueda, D.1
Wick, K.2
McDowell, S.E.3
Walter, N.G.4
-
32
-
-
78649677325
-
Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations
-
McDowell, S. E., Jun, J. M., and Walter, N. G. (2010) Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations RNA 16, 2414-2426
-
(2010)
RNA
, vol.16
, pp. 2414-2426
-
-
McDowell, S.E.1
Jun, J.M.2
Walter, N.G.3
-
33
-
-
76249126156
-
Multiple native states reveal persistent ruggedness of an RNA folding landscape
-
Solomatin, S. V., Greenfeld, M., Chu, S., and Herschlag, D. (2010) Multiple native states reveal persistent ruggedness of an RNA folding landscape Nature 463, 681-684
-
(2010)
Nature
, vol.463
, pp. 681-684
-
-
Solomatin, S.V.1
Greenfeld, M.2
Chu, S.3
Herschlag, D.4
-
34
-
-
0032578472
-
RNA folding causes secondary structure rearrangement
-
Wu, M. and Tinoco, I., Jr. (1998) RNA folding causes secondary structure rearrangement Proc. Natl. Acad. Sci. U.S.A. 95, 11555-11560
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 11555-11560
-
-
Wu, M.1
Tinoco Jr., I.2
-
35
-
-
78649233212
-
Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy
-
Baird, N. J., Ludtke, S. J., Khant, H., Chiu, W., Pan, T., and Sosnick, T. R. (2010) Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy J. Am. Chem. Soc. 132, 16352-16353
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 16352-16353
-
-
Baird, N.J.1
Ludtke, S.J.2
Khant, H.3
Chiu, W.4
Pan, T.5
Sosnick, T.R.6
-
36
-
-
84857420811
-
Kinetics of tRNA folding monitored by aminoacylation
-
Bhaskaran, H., Rodriguez-Hernandez, A., and Perona, J. J. (2012) Kinetics of tRNA folding monitored by aminoacylation RNA 18, 569-580
-
(2012)
RNA
, vol.18
, pp. 569-580
-
-
Bhaskaran, H.1
Rodriguez-Hernandez, A.2
Perona, J.J.3
-
37
-
-
0024391241
-
The aminoacylation of structurally variant phenylalanine tRNAs from mitochondria and various nonmitochondrial sources by bovine mitochondrial phenylalanyl-tRNA synthetase
-
Kumazawa, Y., Yokogawa, T., Hasegawa, E., Miura, K., and Watanabe, K. (1989) The aminoacylation of structurally variant phenylalanine tRNAs from mitochondria and various nonmitochondrial sources by bovine mitochondrial phenylalanyl-tRNA synthetase J. Biol. Chem. 264, 13005-13011
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 13005-13011
-
-
Kumazawa, Y.1
Yokogawa, T.2
Hasegawa, E.3
Miura, K.4
Watanabe, K.5
-
38
-
-
0033735040
-
Search for characteristic structural features of mammalian mitochondrial tRNAs
-
Helm, M., Brulé, H., Friede, D., Giegé, R., Pütz, D., and Florentz, C. (2000) Search for characteristic structural features of mammalian mitochondrial tRNAs RNA 6, 1356-1379
-
(2000)
RNA
, vol.6
, pp. 1356-1379
-
-
Helm, M.1
Brulé, H.2
Friede, D.3
Giegé, R.4
Pütz, D.5
Florentz, C.6
-
39
-
-
34548767727
-
Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step
-
Suzuki, T. and Suzuki, T. (2007) Chaplet column chromatography: isolation of a large set of individual RNAs in a single step Methods Enzymol. 425, 231-239
-
(2007)
Methods Enzymol.
, vol.425
, pp. 231-239
-
-
Suzuki, T.1
Suzuki, T.2
-
40
-
-
0037417764
-
The pathogenic A3243G mutation in human mitochondrial tRNALeu(UUR) decreases the efficiency of aminoacylation
-
Park, H., Davidson, E., and King, M. P. (2003) The pathogenic A3243G mutation in human mitochondrial tRNALeu(UUR) decreases the efficiency of aminoacylation Biochemistry 42, 958-964
-
(2003)
Biochemistry
, vol.42
, pp. 958-964
-
-
Park, H.1
Davidson, E.2
King, M.P.3
-
41
-
-
0033835792
-
The role of tightly bound ATP in Escherichia coli tRNA nucleotidyltransferase
-
Tomari, Y., Suzuki, T., Watanabe, K., and Ueda, T. (2000) The role of tightly bound ATP in Escherichia coli tRNA nucleotidyltransferase Genes Cells 5, 689-698
-
(2000)
Genes Cells
, vol.5
, pp. 689-698
-
-
Tomari, Y.1
Suzuki, T.2
Watanabe, K.3
Ueda, T.4
-
42
-
-
34548789633
-
Mass spectrometric identification and characterization of RNA-modifying enzymes
-
Suzuki, T., Ikeuchi, Y., Noma, A., and Sakaguchi, Y. (2007) Mass spectrometric identification and characterization of RNA-modifying enzymes Methods Enzymol. 425, 211-229
-
(2007)
Methods Enzymol.
, vol.425
, pp. 211-229
-
-
Suzuki, T.1
Ikeuchi, Y.2
Noma, A.3
Sakaguchi, Y.4
-
43
-
-
79952458765
-
Heat maps for intramolecular communication in an RNP enzyme encoding glutamine
-
Rodriguez-Hernandez, A. and Perona, J. J. (2011) Heat maps for intramolecular communication in an RNP enzyme encoding glutamine Structure 19, 386-396
-
(2011)
Structure
, vol.19
, pp. 386-396
-
-
Rodriguez-Hernandez, A.1
Perona, J.J.2
-
44
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson, K. A., Merino, E. J., and Weeks, K. M. (2006) Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution Nat. Protoc. 1, 1610-1616
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
45
-
-
23144436036
-
Assembly PCR oligo maker: A tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production
-
Rydzanicz, R., Zhao, X. S., and Johnson, P. E. (2005) Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production Nucleic Acids Res. 33, W521-525
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 521-525
-
-
Rydzanicz, R.1
Zhao, X.S.2
Johnson, P.E.3
-
46
-
-
84876393104
-
Preparation of long templates for RNA in vitro transcription by recursive PCR
-
Bowman, J. C., Azizi, B., Lenz, T. K., Roy, P., and Williams, L. D. (2012) Preparation of long templates for RNA in vitro transcription by recursive PCR Methods Mol. Biol. 941, 19-41
-
(2012)
Methods Mol. Biol.
, vol.941
, pp. 19-41
-
-
Bowman, J.C.1
Azizi, B.2
Lenz, T.K.3
Roy, P.4
Williams, L.D.5
-
47
-
-
0037449126
-
Towards understanding human mitochondrial leucine aminoacylation identity
-
Sohm, B., Frugier, M., Brule, H., Olszak, K., Przykorska, A., and Florentz, C. (2003) Towards understanding human mitochondrial leucine aminoacylation identity J. Mol. Biol. 328, 995-1010
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 995-1010
-
-
Sohm, B.1
Frugier, M.2
Brule, H.3
Olszak, K.4
Przykorska, A.5
Florentz, C.6
-
48
-
-
2342527084
-
Recognition of human mitochondrial tRNALeu(UUR) by its cognate leucyl-tRNA synthetase
-
Sohm, B., Sissler, M., Park, H., King, M. P., and Florentz, C. (2004) Recognition of human mitochondrial tRNALeu(UUR) by its cognate leucyl-tRNA synthetase J. Mol. Biol. 339, 17-29
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 17-29
-
-
Sohm, B.1
Sissler, M.2
Park, H.3
King, M.P.4
Florentz, C.5
-
49
-
-
3643114575
-
Universal rules and idiosyncratic features in tRNA identity
-
Giegé, R., Sissler, M., and Florentz, C. (1998) Universal rules and idiosyncratic features in tRNA identity Nucleic Acids Res. 26, 5017-5035
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5017-5035
-
-
Giegé, R.1
Sissler, M.2
Florentz, C.3
-
50
-
-
38649088907
-
[3′-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation
-
Ledoux, S. and Uhlenbeck, O. C. (2008) [3′-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation Methods 44, 74-80
-
(2008)
Methods
, vol.44
, pp. 74-80
-
-
Ledoux, S.1
Uhlenbeck, O.C.2
-
51
-
-
80051664164
-
Two-step aminoacylation of tRNA without channeling in Archaea
-
Bhaskaran, H. and Perona, J. J. (2011) Two-step aminoacylation of tRNA without channeling in Archaea J. Mol. Biol. 411, 854-869
-
(2011)
J. Mol. Biol.
, vol.411
, pp. 854-869
-
-
Bhaskaran, H.1
Perona, J.J.2
-
52
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
Lorsch, J. R. and Herschlag, D. (1998) The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide Biochemistry 37, 2180-2193
-
(1998)
Biochemistry
, vol.37
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
53
-
-
37049048981
-
Ion-association constants of some acetates by pH (glass electrode) measurements
-
Archer, D. W. and Monk, C. B. (1964) Ion-association constants of some acetates by pH (glass electrode) measurements J. Chem. Soc. 3117-3122
-
(1964)
J. Chem. Soc.
, pp. 3117-3122
-
-
Archer, D.W.1
Monk, C.B.2
-
55
-
-
0035957280
-
Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations
-
Shelton, V. M., Sosnick, T. R., and Pan, T. (2001) Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations Biochemistry 40, 3629-3638
-
(2001)
Biochemistry
, vol.40
, pp. 3629-3638
-
-
Shelton, V.M.1
Sosnick, T.R.2
Pan, T.3
-
56
-
-
80054809557
-
The Azoarcus group I intron ribozyme misfolds and is accelerated for refolding by ATP-dependent RNA chaperone proteins
-
Sinan, S., Yuan, X., and Russell, R. (2011) The Azoarcus group I intron ribozyme misfolds and is accelerated for refolding by ATP-dependent RNA chaperone proteins J. Biol. Chem. 286, 37304-37312
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37304-37312
-
-
Sinan, S.1
Yuan, X.2
Russell, R.3
-
57
-
-
0141815727
-
Glutamate counteracts the denaturing effect of urea through its effect on the denatured state
-
Mandal, A. K., Samaddar, S., Banerjee, R., Lahiri, S., Bhattacharyya, A., and Roy, S. (2003) Glutamate counteracts the denaturing effect of urea through its effect on the denatured state J. Biol. Chem. 278, 36077-36084
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 36077-36084
-
-
Mandal, A.K.1
Samaddar, S.2
Banerjee, R.3
Lahiri, S.4
Bhattacharyya, A.5
Roy, S.6
-
58
-
-
6044249065
-
Mitochondrial tRNA 3′ end metabolism and human disease
-
Levinger, L., Morl, M., and Florentz, C. (2004) Mitochondrial tRNA 3′ end metabolism and human disease Nucleic Acids Res. 32, 5430-5441
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5430-5441
-
-
Levinger, L.1
Morl, M.2
Florentz, C.3
-
59
-
-
80755169463
-
Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases
-
Suzuki, T. and Nagao, A. (2011) Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases Annu. Rev. Genet. 45, 299-329
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 299-329
-
-
Suzuki, T.1
Nagao, A.2
-
60
-
-
6344221310
-
Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease
-
Kirino, Y., Yasukawa, T., Ohta, S., Akira, S., Ishihara, K., Watanabe, K., and Suzuki, T. (2004) Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease Proc. Natl. Acad. Sci. U.S.A. 101, 15070-15075
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15070-15075
-
-
Kirino, Y.1
Yasukawa, T.2
Ohta, S.3
Akira, S.4
Ishihara, K.5
Watanabe, K.6
Suzuki, T.7
-
62
-
-
0008875663
-
Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA
-
Quigley, G. J., Teeter, M. M., and Rich, A. (1978) Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA Proc. Natl. Acad. Sci. U.S.A. 75, 64-68
-
(1978)
Proc. Natl. Acad. Sci. U.S.A.
, vol.75
, pp. 64-68
-
-
Quigley, G.J.1
Teeter, M.M.2
Rich, A.3
-
63
-
-
0032052242
-
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
-
Helm, M., Brule, H., Degoul, F., Cepanec, C., Leroux, J. P., Giege, R., and Florentz, C. (1998) The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA Nucleic Acids Res. 26, 1636-1643
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1636-1643
-
-
Helm, M.1
Brule, H.2
Degoul, F.3
Cepanec, C.4
Leroux, J.P.5
Giege, R.6
Florentz, C.7
-
64
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme
-
Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., and Yokoyama, S. (2003) Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme Cell 113, 383-394
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
65
-
-
0030821725
-
Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel
-
Babitzke, P. (1997) Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel Mol. Microbiol. 26, 1-9
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 1-9
-
-
Babitzke, P.1
-
66
-
-
0034724565
-
Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
-
Giedroc, D. P., Theimer, C. A., and Nixon, P. L. (2000) Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting J. Mol. Biol. 298, 167-185
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 167-185
-
-
Giedroc, D.P.1
Theimer, C.A.2
Nixon, P.L.3
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