Out of the bottleneck: The Diversity Outcross and Collaborative Cross mouse populations in behavioral genetics research

Mammalian Genome

Volumn 25, Issue 1-2, 2014, Pages 3-11

  Chesler, Elissa J ^a  

^a JACKSON LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADVANCED INTERCROSS LINE; BEHAVIOR GENETICS; BEHAVIORAL RESEARCH; BEHAVIORAL SCIENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; INBRED STRAIN; NONHUMAN; OUTCROSSING; QUALITATIVE RESEARCH; QUANTITATIVE STUDY; QUANTITATIVE TRAIT LOCUS MAPPING; REVIEW;

ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; GENE EXPRESSION PROFILING; GENETIC VARIATION; GENETICS, BEHAVIORAL; MICE; MICE, INBRED STRAINS; QUANTITATIVE TRAIT LOCI; RECOMBINATION, GENETIC;

EID: 84895866508     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-013-9492-9     Document Type: Review

References (75)

1. Aylor DL, Valdar W et al (2011) Genetic analysis of complex traits in the emerging Collaborative Cross. Genome Res 21(8):1213-1222
2. Bailey JS, Grabowski-Boase L et al (2008) Identification of quantitative trait loci for locomotor activation and anxiety using closely related inbred strains. Genes Brain Behav 7(7):761-769
3. Belknap JK (1998) Effect of within-strain sample size on QTL detection and mapping using recombinant inbred mouse strains. Behav Genet 28(1):29-38
4. Cheng R, Lim JE et al (2010) Genome-wide association studies and the problem of relatedness among advanced intercross lines and other highly recombinant populations. Genetics 185(3):1033-1044
5. Chesler EJ, Wang J et al (2003) Genetic correlates of gene expression in recombinant inbred strains: a relational model system to explore neurobehavioral phenotypes. Neuroinformatics 1(4):343-357 (Pubitemid 37346050)
6. Chesler EJ, Lu L et al (2005) Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat Genet 37(3):233-242 (Pubitemid 41716250)
7. Chesler EJ, Miller DR et al (2008) The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems genetics. Mamm Genome 19(6):382-389
8. Churchill GA, Airey DC et al (2004) The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet 36(11):1133-1137
9. Churchill GA, Gatti DM et al (2012) The diversity outbred mouse population. Mamm Genome 23(9-10):713-718
10. Crabbe JC, Rigter H et al (1980) Genetic analysis of tolerance to ethanol hypothermia in recombinant inbred mice: effect of desglycinamide(9)-arginine(8) -vasopressin. Behav Genet 10(2):139-152 (Pubitemid 10035256)
11. Crabbe JC, Rigter H et al (1982) Analysis of behavioural responses to an ACTH analog in CXB/By recombinant inbred mice. Behav Brain Res 4(3):289-314 (Pubitemid 12180138)
12. Danecek P, Nellaker C et al (2012) High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biol 13(4):26
13. Darvasi A, Soller M (1995) Advanced intercross lines, an experimental population for fine genetic mapping. Genetics 141(3):1199-1207
14. Dewsbury DA (2009) Origins of behavior genetics: the role of the Jackson laboratory. Behav Genet 39(1):1-5
15. Dewsbury DA (2012) A history of the behavior program at the Jackson laboratory: an overview. J Comp Psychol 126(1):31-44
16. Durrant C, Tayem H et al (2011) Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection. Genome Res 21(8):1239-1248
17. Erwin VG, McClearn GE et al (1980) Interrelationships of alcohol consumption, actions of alcohol, and biochemical traits. Pharmacol Biochem Behav 13(Suppl 1):297-302
18. Fernandes C, Liu L et al (2004) Behavioral characterization of wild derived male mice (Mus musculus musculus) of the PWD/Ph inbred strain: high exploration compared to C57BL/6J. Behav Genet 34(6):621-630 (Pubitemid 39463130)
19. Ferris MT, Aylor DL et al (2013) Modeling host genetic regulation of influenza pathogenesis in the Collaborative Cross. PLoS Pathog 9(2):e1003196
20. Forejt J (1985) Chromosomal and genic sterility of hybrid type in mice and men. Exp Clin Immunogenet 2(2):106-119
21. Goldman D, Crabbe J (1986)Use of chromosomallymapped and identified mouse brain proteins for behavioral genetic analysis of alcoholism. Prog Neuropsychopharmacol Biol Psychiatry 10(2):177-189 (Pubitemid 16061393)
22. Gregorova S, Divina P et al (2008) Mouse consomic strains: exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies. Genome Res 18(3):509-515 (Pubitemid 351347094)
23. Hitzemann B, Dains K et al (1994) Further studies on the relationship between dopamine cell density and haloperidol-induced catalepsy. J Pharmacol Exp Ther 271(2):969-976 (Pubitemid 24377788)
24. Iancu OD, Darakjian P et al (2010) Genetic diversity and striatal gene networks: focus on the heterogeneous stock-Collaborative Cross (HS-CC) mouse. BMC Genomics 11:585
25. Iraqi FA, Churchill G et al (2008) The Collaborative Cross, developing a resource for mammalian systems genetics: a status report of the Wellcome Trust cohort. Mamm Genome 19(6):379-381
26. Kang HM, Ye C et al (2008) Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots. Genetics 180(4):1909-1925
27. Keane TM, Goodstadt L et al (2011) Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477(7364):289-294
28. Kember RL, Fernandes C et al (2010) A B2 SINE insertion in the Comt1 gene (Comt1(B2i)) results in an overexpressing, behavior modifying allele present in classical inbred mouse strains. Genes Brain Behav 9(8):925-932
29. Kempermann G, Chesler EJ et al (2006) Natural variation and genetic covariance in adult hippocampal neurogenesis. Proc Natl Acad Sci USA 103(3):780-785 (Pubitemid 43153102)
30. Laurie CC, Nickerson DA et al (2007) Linkage disequilibrium in wild mice. PLoS Genet 3(8):e144
31. Li Z, Mulligan MK et al (2010) A transposon in Comt generates mRNA variants and causes widespread expression and behavioral differences among mice. PLoS One 5(8):e12181
32. Logan RW, Robledo RF et al (2013) High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes Brain Behav 12(4):424-437
33. Lu L, Wei L et al (2008) Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. BMC Genomics 9:444
34. McShane BB, Galante RJ et al (2010) Characterization of the bout durations of sleep and wakefulness. J Neurosci Methods 193(2):321-333
35. Morahan G, Balmer L et al (2008) Establishment of "The Gene Mine": a resource for rapid identification of complex trait genes. Mamm Genome 19(6):390-393
36. Mulligan MK, Wang X et al (2012) Complex control of GABA(A) receptor subunit mRNA expression: variation, covariation, and genetic regulation. PLoS One 7(4):e34586
37. Nellaker C, Keane TM et al (2012) The genomic landscape shaped by selection on transposable elements across 18 mouse strains. Genome Biol 13(6):R45
38. Park CC, Gale GD et al (2011) Gene networks associated with conditional fear in mice identified using a systems genetics approach. BMC Syst Biol 5:43
39. Parker CC, Cheng R et al (2012a) Genome-wide association for methamphetamine sensitivity in an advanced intercross mouse line. Genes Brain Behav 11(1):52-61
40. Parker CC, Sokoloff G et al (2012b) Genome-wide association for fear conditioning in an advanced intercross mouse line. Behav Genet 42(3):437-448
41. Patil SS, Boddul SV et al (2011) Differences in hippocampal protein levels between C57Bl/6J, PWD/PhJ, and Apodemus sylvaticus are paralleled by differences in spatial memory. Hippocampus 21(7):714-723
42. Payseur BA, Place M (2007) Prospects for association mapping in classical inbred mouse strains. Genetics 175(4):1999-2008 (Pubitemid 46789980)
43. Peirce JL, Lu L et al (2004) A new set of BXD recombinant inbred lines from advanced intercross populations in mice. BMC Genet 5:7
44. Petkov PM, Graber JH et al (2005) Evidence of a large-scale functional organization of mammalian chromosomes. PLoS Genet 1(3):e33
45. Philip VM, Duvvuru S et al (2010) High-throughput behavioral phenotyping in the expanded panel of BXD recombinant inbred strains. Genes Brain Behav 9(2):129-159
46. Philip VM, Sokoloff G et al (2011) Genetic analysis in the Collaborative Cross breeding population. Genome Res 21(8):1223-1238
47. Phillips TJ, Feller DJ et al (1989) Selected mouse lines, alcohol and behavior. Experientia 45(9):805-827 (Pubitemid 19230424)
48. Plomin RJ, Manosevitz M (1974) Behavioral polytypism in wild Mus musculus. Behav Genet 4(2):145-157
49. Roberts A, Pardo-Manuel de Villena F et al (2007) The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics. Mamm Genome 18(6-7):473-481 (Pubitemid 47360425)
50. Salcedo T, Geraldes A et al (2007) Nucleotide variation in wild and inbred mice. Genetics 177(4):2277-2291
51. Schoemaker H, Nickolson VJ et al (1982) Synaptosomal uptake studies on recombinant inbred mice; neurotransmitter interaction and behavioral correlates. Brain Res 235(2):253-264 (Pubitemid 12180775)
52. Segall SK, Nackley AG et al (2010) Comt1 genotype and expression predicts anxiety and nociceptive sensitivity in inbred strains of mice. Genes Brain Behav 9(8):933-946
53. Shifman S, Bell JT et al (2006) A high-resolution single nucleotide polymorphism genetic map of the mouse genome. PLoS Biol 4(12): e395
54. Simmel EC, Eleftheriou BE (1977) Multivariate and behavior genetic analysis of avoidance of complex visual stimuli and activity in recombinant inbred strains of mice. Behav Genet 7(3):239-250 (Pubitemid 8111983)
55. Sluyter F, Bult A et al (1995) A comparison between house mouse lines selected for attack latency or nest-building: evidence for a genetic basis of alternative behavioral strategies. Behav Genet 25(3):247-252
56. Sprott RL, Staats J (1975) Behavioral studies using genetically defined mice. A bibliography. Behav Genet 5(1):27-82
57. Svenson KL, Gatti DM et al (2012) High-resolution genetic mapping using the mouse diversity outbred population. Genetics 190(2):437-447
58. Thaisz J, Tsaih SW et al (2012) Genetic analysis of albuminuria in Collaborative Cross and multiple mouse intercross populations. Am J Physiol Renal Physiol 303(7):F972-F981
59. Threadgill DW, Hunter KW et al (2002) Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort. Mamm Genome 13(4):175-178 (Pubitemid 34299027)
60. Tordoff MG, Shao H et al (2008) Involvement of T1R3 in calcium-magnesium taste. Physiol Genomics 34(3):338-348 (Pubitemid 352758848)
61. Tsaih SW, Lu L et al (2005) Quantitative trait mapping in a diallel cross of recombinant inbred lines. Mamm Genome 16(5):344-355 (Pubitemid 41160337)
62. Valdar W, Solberg LC et al (2006) Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat Genet 38(8):879-887 (Pubitemid 44141655)
63. Vanderlinden LA, Saba LM et al (2013) Whole brain and brain regional coexpression network interactions associated with predisposition to alcohol consumption. PLoS One 8(7):e68878
64. Wahlsten D (1973) Contributions of the genes albinism (c) and retinal degeneration (rd) to a strain-by-training procedure interaction in avoidance learning. Behav Genet 3(3):303-316
65. Wahlsten D, Metten P et al (2003) A rating scale for wildness and ease of handling laboratory mice: results for 21 inbred strains tested in two laboratories. Genes Brain Behav 2(2):71-79 (Pubitemid 36717652)
66. Wang X, Mozhui K et al (2012) A promoter polymorphism in the Per3 gene is associated with alcohol and stress response. Transl Psychiatry 2:e73
67. Weber JN, Peterson BK et al (2013) Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice. Nature 493(7432):402-405
68. Williams RW, Bennett B et al (2004) Genetic structure of the LXS panel of recombinant inbred mouse strains: a powerful resource for complex trait analysis. Mamm Genome 15(8):637-647 (Pubitemid 39050026)
69. Wolen AR, Phillips CA et al (2012) Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications. PLoS One 7(4):e33575
70. Yalcin B, Flint J (2012) Association studies in outbredmice in a new era of full-genome sequencing. Mamm Genome 23(9-10):719-726
71. Yalcin B, Nicod J et al (2010) Commercially available outbred mice for genome-wide association studies. PLoS Genet 6(9):e1001085
72. Yalcin B, Wong K et al (2012) The fine-scale architecture of structural variants in 17 mouse genomes. Genome Biol 13(3):R18
73. Yang H, Bell TA et al (2007) On the subspecific origin of the laboratory mouse. Nat Genet 39(9):1100-1107 (Pubitemid 47340646)
74. Yang H, Wang JR et al (2011) Subspecific origin and haplotype diversity in the laboratory mouse. Nat Genet 43(7):648-655
75. Zombeck JA, Deyoung EK et al (2011) Selective breeding for increased home cage physical activity in Collaborative Cross and Hsd:ICR mice. Behav Genet 41(4):571-582