Quantitative trait mapping in a diallel cross of recombinant inbred lines

Mammalian Genome

Volumn 16, Issue 5, 2005, Pages 344-355

  Tsaih, Shirng Wern ^a   Lu, Lu ^b   Airey, David C ^c   Williams, Robert W ^b   Churchill, Gary A ^a  

^a JACKSON LABORATORY   (United States)

^b UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

^c VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CORRELATION ANALYSIS; GENETIC ANALYSIS; GENETICS; GENOTYPE; INBRED STRAIN; MUTATION; PROGENY; QUANTITATIVE TRAIT LOCUS MAPPING;

ANIMALS; CHROMOSOME MAPPING; COMPUTER SIMULATION; CROSSES, GENETIC; FEMALE; MALE; MICE; MODELS, GENETIC; PHENOTYPE; QUANTITATIVE TRAIT LOCI; RECOMBINATION, GENETIC;

EID: 23844467156     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-004-2466-1     Document Type: Article

References (30)

1. Ahmadiyeh N, Churchill GA, Shimomura K, Solberg LC, Takahashi JS, et al. (2003) X-linked and lineage-dependent inheritance of coping responses to stress. Mamm Genome 14, 748-757
2. Bailey DW (1971) Recombinant-inbred strains. An aid to finding identity, linkage and function of histocompatibility and other genes. Transplantation 11, 325-327
3. Belknap JK (1998) Effect of within-strain sample size on QTL detection and mapping using recombinant inbred mouse strains. Behav Genet 28(1), 29-38
4. Belknap K, Mitchell SR, O'Toole LA, Helms ML, Crabbe JC (1996) Type I and type II error rates for quantitative trait loci (QTL) mapping studies using recombinant inbred mouse strains. Behav Genet 26(2), 149-160
5. Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19(7), 889-890
6. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971
7. Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, et al. (2004) The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet 36(11), 1133-1137
8. Dux A, Muhlbock O, Bailey DW (1978) Genetic analyses of differences in incidence of mammary tumors and reticulum cell neoplasms with the use of recombinant inbred lines of mice. J Natl Cancer Inst 61, 1125-1129
9. Fry JD (2004) Estimation of genetic variances and covariances by restricted maximum likelihood using proc mixed: In: Genetic Analysis of Complex Traits, Saxton AM (ed.) (Cary, NC, SAS Institute Inc.), pp 27-34
10. Griffing B (1956) Concept of general and specific combining ability in relation to diallel-crossing systems. Aust J Biol Sci 9, 463-493
11. Haldane JBS, Waddington CH (1931) Inbreeding and linkage. Genetics 16, 357-374
12. Hartwell L (2004) Genetics: Robust interactions. Science 303, 774-775
13. Hayman BI (1954a) The analysis of variance of diallel tables. Biometrics 10, 235-244
14. Hayman BI (1954b) The theory and analysis of diallel crosses. I. Genetics 39, 789-809
15. Knapp SJ, Bridges WC (1990) Using molecular markers to estimate quantitative trait locus parameters: Power and genetic variance for unreplicated and replicated progeny. Genetics 126, 769-777
16. Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121(1), 185-199
17. Limami AM, Rouillon C, Glevarec G, Gallais A, Hirel B (2002) Genetic and physiological analysis of germination efficiency in maize in relation to nitrogen metabolism reveals the importance of cytosolic glutamine synthetase. Physiol Plant 130(4), 1860-1870
18. Littell RC, Milliken GA, Stroup WW, Wolfinger RD (1996) SAS system for mixed models (Cary, NC: SAS Institute, Inc.)
19. Nuzhdin SV, Pasyukova EG, Dilda CL, Zeng ZB, Mackay TF (1997) Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster. Proc Natl Acad Sci USA 94, 9734-9739
20. Peirce JL, Lu L, Gu J, Silver LM, Williams RW (2004) A new set of B x D recombinant inbred lines from advanced intercross populations in mice. BMC Genet 5(1), 7
21. Plomin R, McClearn GE (1993) Quantitative trait loci analysis and alcohol-related behaviors. Behav Genet 23, 197-212
22. Taylor B (1996) Recombinant inbred strains. In: Genetic Variants and Strains of the Laboratory Mouse vol 2. Lyon ML, Rastan S, Brown S (eds.) (Oxford, Oxford University Press), pp 1597-1659
23. Threadgill DW, Hunter KW, Williams RW (2002) Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort. Mamm Genome 13, 175-178
24. van Swinderen B, Shook DR, Ebert RH, Cherkasova VA, Johnson TE, et al. (1997) Quantitative trait loci controlling halothane sensitivity in Caenorhabditis elegans. Proc Natl Acad Sci USA 94, 8232-8237
25. Westfall PH, Young SS (1993) Re-Sampling Based Multiple Testing (New York: Wiley)
26. Williams RW (2000) Mapping genes that modulate mouse brain development: a quantitative genetic approach. Results Probl Cell Differ 30, 21-49
27. Williams RW, Gu J, Qi S, Lu L (2001) The genetic structure of recombinant inbred mice: high-resolution consensus maps for complex trait analysis. Genome Biol 2(11), RESEARCH0046
28. Williams RW, Bennett B, Lu L, Gu J, DeFries JC, et al. (2004) Genetic structure of the LxS panel of recombinant inbred mouse strains: a powerful resource for complex trait analysis. Mamm Genome 15, 637-647
29. Wright AJ (1985) Diallel designs, analyses, and reference populations. Heredity 54, 307-311
30. Xiang B, Li B (2001) A new mixed analytical method for genetic analysis of diallel data. Can J For Res 31, 2252-2259