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Volumn 192, Issue 24, 2010, Pages 6418-6427

Silent mischief: Bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE MU; ESCHERICHIA COLI; GENE CONSTRUCT; GENE INSERTION; HOST RANGE; MUTAGENESIS; NONHUMAN; PHENOTYPE; PLASMID; PRIORITY JOURNAL; TRANSPOSON;

EID: 78649653296     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00621-10     Document Type: Article
Times cited : (210)

References (52)
  • 1
    • 0028307378 scopus 로고
    • Frequencies of lipopolysaccharide core types in Escherichia coli strains from bacteraemic patients
    • Appelmelk, B. J., Y. Q. An, T. A. Hekker, L. G. Thijs, D. M. MacLaren, and J. de Graaf. 1994. Frequencies of lipopolysaccharide core types in Escherichia coli strains from bacteraemic patients. Microbiology 140:1119-1124.
    • (1994) Microbiology , vol.140 , pp. 1119-1124
    • Appelmelk, B.J.1    An, Y.Q.2    Hekker, T.A.3    Thijs, L.G.4    MacLaren, D.M.5    De Graaf, J.6
  • 3
    • 52149087709 scopus 로고    scopus 로고
    • Construction of an improved RP4 (RK2)-based conjugative system
    • Babic, A., A. M. Guerout, and D. Mazel. 2008. Construction of an improved RP4 (RK2)-based conjugative system. Res. Microbiol. 159:545-549.
    • (2008) Res. Microbiol. , vol.159 , pp. 545-549
    • Babic, A.1    Guerout, A.M.2    Mazel, D.3
  • 5
    • 0347325071 scopus 로고    scopus 로고
    • Lysogeny at mid-twentieth century: P1, P2, and other experimental systems
    • Bertani, G. 2004. Lysogeny at mid-twentieth century: P1, P2, and other experimental systems. J. Bacteriol. 186:595-600.
    • (2004) J. Bacteriol. , vol.186 , pp. 595-600
    • Bertani, G.1
  • 7
    • 33746608095 scopus 로고    scopus 로고
    • Signature-tagged mutagenesis of Klebsiella pneumoniae to identify genes that influence biofilm formation on extracellular matrix material
    • Boddicker, J. D., R. A. Anderson, J. Jagnow, and S. Clegg. 2006 Signature-tagged mutagenesis of Klebsiella pneumoniae to identify genes that influence biofilm formation on extracellular matrix material. Infect. Immun. 74:4590-4597.
    • (2006) Infect. Immun. , vol.74 , pp. 4590-4597
    • Boddicker, J.D.1    Anderson, R.A.2    Jagnow, J.3    Clegg, S.4
  • 8
    • 0021866359 scopus 로고
    • Transposable lambda placMu bacteriophages for creating lacZ operon fusions and kanamycin resistance insertions in Escherichia coli
    • Bremer, E., T. J. Silhavy, and G. M. Weinstock. 1985. Transposable lambda placMu bacteriophages for creating lacZ operon fusions and kanamycin resistance insertions in Escherichia coli. J. Bacteriol. 162:1092-1099.
    • (1985) J. Bacteriol. , vol.162 , pp. 1092-1099
    • Bremer, E.1    Silhavy, T.J.2    Weinstock, G.M.3
  • 9
    • 0034668869 scopus 로고    scopus 로고
    • A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans
    • Chaveroche, M. K., J. M. Ghigo, and C. d'Enfert. 2000. A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans. Nucleic Acids Res. 28:E97.
    • (2000) Nucleic Acids Res. , vol.28
    • Chaveroche, M.K.1    Ghigo, J.M.2    D'Enfert, C.3
  • 10
    • 0029065955 scopus 로고
    • Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
    • Cherepanov, P. P., and W. Wackernagel. 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158:9-14.
    • (1995) Gene , vol.158 , pp. 9-14
    • Cherepanov, P.P.1    Wackernagel, W.2
  • 11
    • 0037151792 scopus 로고    scopus 로고
    • Construction of a mariner-based transposon for epitope-tagging and genomic targeting
    • Chiang, S. L., and E. J. Rubin. 2002. Construction of a mariner-based transposon for epitope-tagging and genomic targeting. Gene 296:179-185.
    • (2002) Gene , vol.296 , pp. 179-185
    • Chiang, S.L.1    Rubin, E.J.2
  • 12
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 13
    • 0015863288 scopus 로고
    • Host controlled restriction and modification of bacteriophage Mu and Mu-promoted chromosome mobilization in Citrobacter freundii
    • de Graaff, J., P. C. Kreuning, and P. van de Putte. 1973. Host controlled restriction and modification of bacteriophage Mu and Mu-promoted chromosome mobilization in Citrobacter freundii. Mol. Gen. Genet. 123:283-288.
    • (1973) Mol. Gen. Genet. , vol.123 , pp. 283-288
    • De Graaff, J.1    Kreuning, P.C.2    Van De Putte, P.3
  • 14
    • 0028358260 scopus 로고
    • Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons
    • de Lorenzo, V., and K. N. Timmis. 1994. Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol. 235:386-405.
    • (1994) Methods Enzymol. , vol.235 , pp. 386-405
    • De Lorenzo, V.1    Timmis, K.N.2
  • 15
    • 14644386907 scopus 로고    scopus 로고
    • A new family of mobilizable suicide plasmids based on broad host range R388 plasmid (IncW) and RP4 plasmid (IncPα) conjugative machineries and their cognate Escherichia coli host strains
    • Demarre, G., A. M. Guerout, C. Matsumoto-Mashimo, D. A. Rowe-Magnus, P. Marliere, and D. Mazel. 2005. A new family of mobilizable suicide plasmids based on broad host range R388 plasmid (IncW) and RP4 plasmid (IncPα) conjugative machineries and their cognate Escherichia coli host strains. Res. Microbiol. 156:245-255.
    • (2005) Res. Microbiol. , vol.156 , pp. 245-255
    • Demarre, G.1    Guerout, A.M.2    Matsumoto-Mashimo, C.3    Rowe-Magnus, D.A.4    Marliere, P.5    Mazel, D.6
  • 17
    • 0000527903 scopus 로고
    • Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
    • Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. U. S. A. 76:1648-1652.
    • (1979) Proc. Natl. Acad. Sci. U. S. A. , vol.76 , pp. 1648-1652
    • Figurski, D.H.1    Helinski, D.R.2
  • 18
    • 0026639967 scopus 로고
    • Frequencies of lipopolysaccharide core types among clinical isolates of Escherichia coli defined with monoclonal antibodies
    • Gibb, A. P., G. R. Barclay, I. R. Poxton, and F. di Padova. 1992. Frequencies of lipopolysaccharide core types among clinical isolates of Escherichia coli defined with monoclonal antibodies. J. Infect. Dis. 166:1051-1057.
    • (1992) J. Infect. Dis. , vol.166 , pp. 1051-1057
    • Gibb, A.P.1    Barclay, G.R.2    Poxton, I.R.3    Di Padova, F.4
  • 19
    • 0033987603 scopus 로고    scopus 로고
    • Insertional transposon mutagenesis by electroporation of released Tn5 transposition complexes
    • Goryshin, I. Y., J. Jendrisak, L. M. Hoffman, R. Meis, and W. S. Reznikoff. 2000. Insertional transposon mutagenesis by electroporation of released Tn5 transposition complexes. Nat. Biotechnol. 18:97-100.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 97-100
    • Goryshin, I.Y.1    Jendrisak, J.2    Hoffman, L.M.3    Meis, R.4    Reznikoff, W.S.5
  • 20
    • 0348047326 scopus 로고    scopus 로고
    • Transposon-based strategies for microbial functional genomics and proteomics
    • Hayes, F. 2003. Transposon-based strategies for microbial functional genomics and proteomics. Annu. Rev. Genet. 37:3-29.
    • (2003) Annu. Rev. Genet. , vol.37 , pp. 3-29
    • Hayes, F.1
  • 21
    • 0034534135 scopus 로고    scopus 로고
    • Transposome insertional mutagenesis and direct sequencing of microbial genomes
    • Hoffman, L. M., J. J. Jendrisak, R. J. Meis, I. Y. Goryshin, and S. W. Reznikof. 2000. Transposome insertional mutagenesis and direct sequencing of microbial genomes. Genetica 108:19-24.
    • (2000) Genetica , vol.108 , pp. 19-24
    • Hoffman, L.M.1    Jendrisak, J.J.2    Meis, R.J.3    Goryshin, I.Y.4    Reznikof, S.W.5
  • 23
    • 21544483771 scopus 로고    scopus 로고
    • Suppression of bladder epithelial cytokine responses by uropathogenic Escherichia coli
    • Hunstad, D. A., S. S. Justice, C. S. Hung, S. R. Lauer, and S. J. Hultgren. 2005. Suppression of bladder epithelial cytokine responses by uropathogenic Escherichia coli. Infect. Immun. 73:3999-4006.
    • (2005) Infect. Immun. , vol.73 , pp. 3999-4006
    • Hunstad, D.A.1    Justice, S.S.2    Hung, C.S.3    Lauer, S.R.4    Hultgren, S.J.5
  • 24
    • 0025841773 scopus 로고
    • Uses of transposons with emphasis on Tn10
    • Kleckner, N., J. Bender, and S. Gottesman. 1991. Uses of transposons with emphasis on Tn10. Methods Enzymol. 204:139-180.
    • (1991) Methods Enzymol. , vol.204 , pp. 139-180
    • Kleckner, N.1    Bender, J.2    Gottesman, S.3
  • 25
    • 33645777008 scopus 로고    scopus 로고
    • Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse
    • Lawley, T. D., K. Chan, L. J. Thompson, C. C. Kim, G. R. Govoni, and D. M. Monack. 2006. Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse. PLoS Pathog. 2:e11.
    • (2006) PLoS Pathog. , vol.2
    • Lawley, T.D.1    Chan, K.2    Thompson, L.J.3    Kim, C.C.4    Govoni, G.R.5    Monack, D.M.6
  • 26
    • 33748053969 scopus 로고    scopus 로고
    • The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins
    • Létoffé, S., P. Delepelaire, and C. Wandersman. 2006. The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins. Proc. Natl. Acad. Sci. U. S. A. 103:12891-12896.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 12891-12896
    • Létoffé, S.1    Delepelaire, P.2    Wandersman, C.3
  • 27
    • 33644928491 scopus 로고    scopus 로고
    • Role of Salmonella enterica serovar Typhimurium two-component system PreA/PreB in modulating PmrA-regulated gene transcription
    • Merighi, M., A. Carroll-Portillo, A. N. Septer, A. Bhatiya, and J. S. Gunn. 2006. Role of Salmonella enterica serovar Typhimurium two-component system PreA/PreB in modulating PmrA-regulated gene transcription. J. Bacteriol. 188:141-149.
    • (2006) J. Bacteriol. , vol.188 , pp. 141-149
    • Merighi, M.1    Carroll-Portillo, A.2    Septer, A.N.3    Bhatiya, A.4    Gunn, J.S.5
  • 28
    • 0023892552 scopus 로고
    • A novel suicide vector and its use in construction of insertion mutations: Osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
    • Miller, V. L., and J. J. Mekalanos. 1988. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170:2575-2583.
    • (1988) J. Bacteriol. , vol.170 , pp. 2575-2583
    • Miller, V.L.1    Mekalanos, J.J.2
  • 30
    • 0031924072 scopus 로고    scopus 로고
    • Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli
    • Murphy, K. C. 1998. Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J. Bacteriol. 180:2063-2071.
    • (1998) J. Bacteriol. , vol.180 , pp. 2063-2071
    • Murphy, K.C.1
  • 33
    • 33745122953 scopus 로고    scopus 로고
    • Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti
    • Pobigaylo, N., D. Wetter, S. Szymczak, U. Schiller, S. Kurtz, F. Meyer, T. W. Nattkemper, and A. Becker. 2006. Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti. Appl. Environ. Microbiol. 72:4329-4337.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4329-4337
    • Pobigaylo, N.1    Wetter, D.2    Szymczak, S.3    Schiller, U.4    Kurtz, S.5    Meyer, F.6    Nattkemper, T.W.7    Becker, A.8
  • 35
    • 0017346681 scopus 로고
    • Use of RP4 plasmids carrying bacteriophage Mu insertions in nitrogen fixing bacteria Klebsiella pneumoniae and Rhizobium meliloti
    • Rosenberg, C., B. Bergeron, J. S. Julliot, and J. Denarie. 1977. Use of RP4 plasmids carrying bacteriophage Mu insertions in nitrogen fixing bacteria Klebsiella pneumoniae and Rhizobium meliloti. Basic Life Sci. 9:411-416.
    • (1977) Basic Life Sci. , vol.9 , pp. 411-416
    • Rosenberg, C.1    Bergeron, B.2    Julliot, J.S.3    Denarie, J.4
  • 36
    • 0021219595 scopus 로고
    • Cell wall receptor for bacteriophage Mu G(+)
    • Sandulache, R., P. Prehm, and D. Kamp. 1984. Cell wall receptor for bacteriophage Mu G(+). J. Bacteriol. 160:299-303.
    • (1984) J. Bacteriol. , vol.160 , pp. 299-303
    • Sandulache, R.1    Prehm, P.2    Kamp, D.3
  • 37
    • 43249095416 scopus 로고    scopus 로고
    • Bacterial genetics: Past achievements, present state of the field, and future challenges
    • 636-641
    • Schweizer, H. 2008. Bacterial genetics: past achievements, present state of the field, and future challenges. Biotechniques 44:633-634, 636-641.
    • (2008) Biotechniques , vol.44 , pp. 633-634
    • Schweizer, H.1
  • 38
    • 4544374421 scopus 로고    scopus 로고
    • Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening
    • Serina, S., F. Nozza, G. Nicastro, F. Faggioni, H. Mottl, G. Deho, and A. Polissi. 2004. Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening. Res. Microbiol. 155: 692-701.
    • (2004) Res. Microbiol. , vol.155 , pp. 692-701
    • Serina, S.1    Nozza, F.2    Nicastro, G.3    Faggioni, F.4    Mottl, H.5    Deho, G.6    Polissi, A.7
  • 39
    • 0038441347 scopus 로고    scopus 로고
    • The art and design of genetic screens: Escherichia coli
    • Shuman, H. A., and T. J. Silhavy. 2003. The art and design of genetic screens: Escherichia coli. Nat. Rev. Genet. 4:419-431.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 419-431
    • Shuman, H.A.1    Silhavy, T.J.2
  • 40
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in Gram negative bacteria
    • Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Biotechnology 1:784-791.
    • (1983) Biotechnology , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Pühler, A.3
  • 41
    • 0036438796 scopus 로고    scopus 로고
    • RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae
    • Stabb, E. V., and E. G. Ruby. 2002. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods Enzymol. 358:413-426.
    • (2002) Methods Enzymol. , vol.358 , pp. 413-426
    • Stabb, E.V.1    Ruby, E.G.2
  • 42
    • 0020679467 scopus 로고
    • Localized mutagenesis of any specific region of the Escherichia coli chromosome with bacteriophage Mu
    • Tabor, H., E. W. Hafner, and C. W. Tabor. 1983. Localized mutagenesis of any specific region of the Escherichia coli chromosome with bacteriophage Mu. Methods Enzymol. 94:91-104.
    • (1983) Methods Enzymol. , vol.94 , pp. 91-104
    • Tabor, H.1    Hafner, E.W.2    Tabor, C.W.3
  • 43
    • 0001060631 scopus 로고
    • Bacteriophage-induced mutation in Escherichia coli
    • Taylor, A. L. 1963. Bacteriophage-induced mutation in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 50:1043-1051.
    • (1963) Proc. Natl. Acad. Sci. U. S. A. , vol.50 , pp. 1043-1051
    • Taylor, A.L.1
  • 45
    • 0023506940 scopus 로고
    • Incompatibility group P plasmids: Genetics, evolution, and use in genetic manipulation
    • Thomas, C. M., and C. A. Smith. 1987. Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annu. Rev. Microbiol. 41:77-101.
    • (1987) Annu. Rev. Microbiol. , vol.41 , pp. 77-101
    • Thomas, C.M.1    Smith, C.A.2
  • 46
    • 37349070714 scopus 로고    scopus 로고
    • Signature-tagged mutagenesis of Edwardsiella ictaluri identifies virulence-related genes, including a Salmonella pathogenicity island 2 class of type III secretion systems
    • Thune, R. L., D. H. Fernandez, J. L. Benoit, M. Kelly-Smith, M. L. Rogge, N. J. Booth, C. A. Landry, and R. A. Bologna. 2007. Signature-tagged mutagenesis of Edwardsiella ictaluri identifies virulence-related genes, including a Salmonella pathogenicity island 2 class of type III secretion systems. Appl. Environ. Microbiol. 73:7934-7946.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7934-7946
    • Thune, R.L.1    Fernandez, D.H.2    Benoit, J.L.3    Kelly-Smith, M.4    Rogge, M.L.5    Booth, N.J.6    Landry, C.A.7    Bologna, R.A.8
  • 47
    • 0002101203 scopus 로고
    • Phage Mu: Transposition as a life-style
    • J. A. Shapiro (ed.), Academic Press, New York, NY
    • Toussaint, A., and A. Résibois. 1983. Phage Mu: transposition as a life-style, p. 105-158. In J. A. Shapiro (ed.), Mobile genetic elements. Academic Press, New York, NY.
    • (1983) Mobile Genetic Elements , pp. 105-158
    • Toussaint, A.1    Résibois, A.2
  • 48
    • 37549024994 scopus 로고    scopus 로고
    • The amino acid valine is secreted in continuous-flow bacterial biofilms
    • Valle, J., S. Da Re, S. Schmid, D. Skurnik, R. D'Ari, and J. M. Ghigo. 2008. The amino acid valine is secreted in continuous-flow bacterial biofilms. J. Bacteriol. 190:264-274.
    • (2008) J. Bacteriol. , vol.190 , pp. 264-274
    • Valle, J.1    Da Re, S.2    Schmid, S.3    Skurnik, D.4    D'Ari, R.5    Ghigo, J.M.6
  • 49
    • 0018926629 scopus 로고
    • Invertible DNA determines host specificity of bacteriophage Mu
    • van de Putte, P., S. Cramer, and M. Giphart-Gassler. 1980. Invertible DNA determines host specificity of bacteriophage Mu. Nature 286:218-222.
    • (1980) Nature , vol.286 , pp. 218-222
    • Van De Putte, P.1    Cramer, S.2    Giphart-Gassler, M.3
  • 50
    • 0020045130 scopus 로고
    • Chromosome transfer and Rprime formation by an RP4::mini-Mu derivative in Escherichia coli, Salmonella typhimurium, Klebsiella pneumoniae, and Proteus mirabilis
    • Van Gijsegem, F., and A. Toussaint. 1982. Chromosome transfer and Rprime formation by an RP4::mini-Mu derivative in Escherichia coli, Salmonella typhimurium, Klebsiella pneumoniae, and Proteus mirabilis. Plasmid 7:30-44.
    • (1982) Plasmid , vol.7 , pp. 30-44
    • Van Gijsegem, F.1    Toussaint, A.2
  • 51
    • 0002231127 scopus 로고
    • Mu as a genetic tool
    • N. Symonds, A. Toussaint, P. Van de Putte, and M. M. Howe (ed.), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
    • Van Gijsegem, F., A. Toussaint, and M. Casadaban. 1987. Mu as a genetic tool, p. 215-250. In N. Symonds, A. Toussaint, P. Van de Putte, and M. M. Howe (ed.), Phage Mu. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
    • (1987) Phage Mu , pp. 215-250
    • Van Gijsegem, F.1    Toussaint, A.2    Casadaban, M.3
  • 52
    • 40849100635 scopus 로고    scopus 로고
    • Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25
    • Zhang, X. X., and P. B. Rainey. 2008. Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25. Genetics 178:185-195.
    • (2008) Genetics , vol.178 , pp. 185-195
    • Zhang, X.X.1    Rainey, P.B.2


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