메뉴 건너뛰기




Volumn 266, Issue 5, 1997, Pages 939-949

A survey of polypeptide deformylase function throughout the eubacterial lineage

Author keywords

def gene; Evolution; Protein synthesis; Trimethoprim

Indexed keywords

DEFORMYLASE; HYDROLASE; POLYPEPTIDE; UNCLASSIFIED DRUG;

EID: 0031567127     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0835     Document Type: Article
Times cited : (53)

References (43)
  • 2
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • Baldauf, S. L., Palmer, J. D. & Doolittle, W. F. (1996). The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA, 93, 7749-7754.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 3
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G. & et al., (1996). Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science, 273, 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3    Zhou, L.4    Fleischmann, R.D.5    Sutton, G.G.6
  • 4
    • 0029023517 scopus 로고
    • Lactococcus lactis glyceraldehyde-3-phosphate dehydrogenase gene, gap: Further evidence for strongly biased codon usage in glycolytic pathway genes
    • Cancilla, M. R., Hillier, A. J. & Davidson, B. E. (1995). Lactococcus lactis glyceraldehyde-3-phosphate dehydrogenase gene, gap: further evidence for strongly biased codon usage in glycolytic pathway genes. Microbiology, 141, 1027-1036.
    • (1995) Microbiology , vol.141 , pp. 1027-1036
    • Cancilla, M.R.1    Hillier, A.J.2    Davidson, B.E.3
  • 5
    • 0024347025 scopus 로고
    • Methionine aminopeptidase gene of Escherichia coli is essential for cell growth
    • Chang, S.-Y. P., McGary, E. & Chang, S. (1989). Methionine aminopeptidase gene of Escherichia coli is essential for cell growth. J. Bacteriol. 171, 4071-4072.
    • (1989) J. Bacteriol. , vol.171 , pp. 4071-4072
    • Chang, S.-Y.P.1    McGary, E.2    Chang, S.3
  • 6
    • 0003565214 scopus 로고
    • to accompany the 1990 software release. University of California Press Berkley, Los Angeles, CA
    • Dixon, W. J., Brown, M. B., Engelman, L. & Jennrih, R. I. (1990). In BMDP Statistical Software Manual ((to accompany the 1990 software release)). University of California Press Berkley, Los Angeles, CA.
    • (1990) BMDP Statistical Software Manual
    • Dixon, W.J.1    Brown, M.B.2    Engelman, L.3    Jennrih, R.I.4
  • 7
    • 0023948010 scopus 로고
    • High efficiency transformation of E. coli by high voltage electroporation
    • Dower, W. J., Miller, J. F. & Ragsdale, C. W. (1988). High efficiency transformation of E. coli by high voltage electroporation. Nucl. Acids Res. 16, 6127-6145.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 6127-6145
    • Dower, W.J.1    Miller, J.F.2    Ragsdale, C.W.3
  • 10
    • 0028929048 scopus 로고
    • Convergent evolution of amino acid usage in archaebacterial and eubacterial lineages adapted to high salt
    • Gandbhir, M., Rascherd, I., Marlière, P. & Mutzel, R. (1995). Convergent evolution of amino acid usage in archaebacterial and eubacterial lineages adapted to high salt. Res. Microbiol 146, 113-120.
    • (1995) Res. Microbiol , vol.146 , pp. 113-120
    • Gandbhir, M.1    Rascherd, I.2    Marlière, P.3    Mutzel, R.4
  • 11
    • 85025567234 scopus 로고
    • Program manual for the Wisconsin package
    • September 1994, 575 Science Drive, Madison, WI 53711, USA
    • Genetics Computer Group, (1994). Program Manual for the Wisconsin Package. In Version 8, September 1994, 575 Science Drive, Madison, WI 53711, USA.
    • (1994) Version 8
  • 12
    • 0011197974 scopus 로고
    • tRNA, tRNA processing, and aminoacyl-tRNA synthetases
    • Sonenshein, L. L., Hoch, J. A. & Losick, R., eds, chapt. 47, American Society for Microbiology, Washington D.C.
    • Green, C. J. & Vold, B. S. (1993). tRNA, tRNA processing, and aminoacyl-tRNA synthetases. In Bacillus subtilis and Other Gram-positive Bacteria (Sonenshein, L. L., Hoch, J. A. & Losick, R., eds), chapt. 47, pp. 683-698. American Society for Microbiology, Washington D.C.
    • (1993) Bacillus Subtilis and Other Gram-positive Bacteria , pp. 683-698
    • Green, C.J.1    Vold, B.S.2
  • 13
    • 0028194841 scopus 로고
    • A gene at 59 minutes on the Escherichia coli chromosome encodes a lipoprotein with unusual amino acid repeat sequences
    • Ichikawa, J. K., Li, C., Fu, J. & Clarke, S. (1994). A gene at 59 minutes on the Escherichia coli chromosome encodes a lipoprotein with unusual amino acid repeat sequences. J. Bacteriol. 176, 1630-1638.
    • (1994) J. Bacteriol. , vol.176 , pp. 1630-1638
    • Ichikawa, J.K.1    Li, C.2    Fu, J.3    Clarke, S.4
  • 14
    • 0026541087 scopus 로고
    • Isolation and characterization of the Escherichia coli msbB gene, a multicopy suppressor of null mutations in the high-temperature requirement gene htrB
    • Karow, M. & Georgopoulos, C. (1992). Isolation and characterization of the Escherichia coli msbB gene, a multicopy suppressor of null mutations in the high-temperature requirement gene htrB. J. Bacteriol. 174, 702-710.
    • (1992) J. Bacteriol. , vol.174 , pp. 702-710
    • Karow, M.1    Georgopoulos, C.2
  • 15
    • 0028091455 scopus 로고
    • Identification of a ToxR-activated gene, tagE, that lies within the accessory colonization factor gene cluster of Vibrio cholerae O395
    • Kovach, M. E., Hughes, K. J., Everiss, K. D. & Peterson, K. M. (1994). Identification of a ToxR-activated gene, tagE, that lies within the accessory colonization factor gene cluster of Vibrio cholerae O395. Gene, 148, 91-95.
    • (1994) Gene , vol.148 , pp. 91-95
    • Kovach, M.E.1    Hughes, K.J.2    Everiss, K.D.3    Peterson, K.M.4
  • 16
    • 0020570527 scopus 로고
    • Comparison of initiation of protein synthesis in prokaryotes, eucaryotes and organelles
    • Kozak, M. (1983). Comparison of initiation of protein synthesis in prokaryotes, eucaryotes and organelles. Microbiol. Rev. 47, 1-45.
    • (1983) Microbiol. Rev. , vol.47 , pp. 1-45
    • Kozak, M.1
  • 17
    • 0028106775 scopus 로고
    • The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation
    • Lange, R. & Hengge-Aronis, R. (1994). The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation. Mol. Microbiol. 13, 733-743.
    • (1994) Mol. Microbiol. , vol.13 , pp. 733-743
    • Lange, R.1    Hengge-Aronis, R.2
  • 18
  • 19
    • 0014524455 scopus 로고
    • Mechanism of protein biosynthesis
    • Lengyel, P. & Söil, D. (1969). Mechanism of protein biosynthesis. Bacteriol. Rev. 33, 264-301.
    • (1969) Bacteriol. Rev. , vol.33 , pp. 264-301
    • Lengyel, P.1    Söil, D.2
  • 20
    • 0028109045 scopus 로고
    • A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome
    • Li, C., Ichikawa, J. K., Ravetto, J. J., Kuo, H.-C., Fu, J. C. & Clarke, S. (1994). A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome. J. Bacteriol. 176, 6015-6022.
    • (1994) J. Bacteriol. , vol.176 , pp. 6015-6022
    • Li, C.1    Ichikawa, J.K.2    Ravetto, J.J.3    Kuo, H.-C.4    Fu, J.C.5    Clarke, S.6
  • 21
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D. J. & Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 22
    • 85025361814 scopus 로고
    • N-Formyl-methionyl-S-RNA
    • Marcker, K. & Sanger, F. (1964). N-Formyl-methionyl-S-RNA. J. Mol. Biol. 8, 835-840.
    • (1964) J. Mol. Biol. , vol.8 , pp. 835-840
    • Marcker, K.1    Sanger, F.2
  • 23
    • 0024975803 scopus 로고
    • Adaptative eradication of methionine and cysteine from cyanobacterial light-harvesting proteins
    • Mazel, D. & Marlière, P. (1989). Adaptative eradication of methionine and cysteine from cyanobacterial light-harvesting proteins. Nature, 341, 245-248.
    • (1989) Nature , vol.341 , pp. 245-248
    • Mazel, D.1    Marlière, P.2
  • 24
    • 0023047208 scopus 로고
    • Green light induces transcription of the phycoerythrin operon in the cyanobacterium Calothrix 7601
    • Mazel, D., Guglielmi, G., Houmard, J., Sidler, W., Bryant, D. A. & Tandeau de Marsac, N. (1986). Green light induces transcription of the phycoerythrin operon in the cyanobacterium Calothrix 7601. Nucl. Acids Res. 14, 8279-8290.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 8279-8290
    • Mazel, D.1    Guglielmi, G.2    Houmard, J.3    Sidler, W.4    Bryant, D.A.5    Tandeau De Marsac, N.6
  • 25
    • 0023840797 scopus 로고
    • A multigene family in Calothrix sp. PCC 7601 encodes phycocyanin, the major component of the cyanobacterial light harvesting antenna
    • Mazel, D., Houmard, J. & Tandeau de Marsac, N. (1988). A multigene family in Calothrix sp. PCC 7601 encodes phycocyanin, the major component of the cyanobacterial light harvesting antenna. Mol. Gen. Genet. 211, 296-304.
    • (1988) Mol. Gen. Genet. , vol.211 , pp. 296-304
    • Mazel, D.1    Houmard, J.2    Tandeau De Marsac, N.3
  • 26
    • 0028053015 scopus 로고
    • Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation
    • Mazel, D., Pochet, S. & Marlière, P. (1994). Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation. EMBO J. 13, 914-923.
    • (1994) EMBO J. , vol.13 , pp. 914-923
    • Mazel, D.1    Pochet, S.2    Marlière, P.3
  • 28
    • 0028916186 scopus 로고
    • Enzymatic properties of Escherichia coli peptide deformylase
    • Meinnel, T. & Blanquet, S. (1995). Enzymatic properties of Escherichia coli peptide deformylase. J. Bacteriol. 177, 1883-1887.
    • (1995) J. Bacteriol. , vol.177 , pp. 1883-1887
    • Meinnel, T.1    Blanquet, S.2
  • 30
    • 0028790271 scopus 로고
    • Mapping of the active site zinc ligands of peptide deformylase
    • Meinnel, T., Lazennec, C. & Blanquet, S. (1995). Mapping of the active site zinc ligands of peptide deformylase. J. Mol. Biol. 254, 175-183.
    • (1995) J. Mol. Biol. , vol.254 , pp. 175-183
    • Meinnel, T.1    Lazennec, C.2    Blanquet, S.3
  • 31
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 32
    • 0027453160 scopus 로고
    • Recognition of boxA antiterminator RNA by E. coli antitermination factors NusB and ribosomal protein S10
    • Nodwell, J. R. & Greenblatt, J. (1993). Recognition of boxA antiterminator RNA by E. coli antitermination factors NusB and ribosomal protein S10. Cell, 72, 261-268.
    • (1993) Cell , vol.72 , pp. 261-268
    • Nodwell, J.R.1    Greenblatt, J.2
  • 33
    • 0025325860 scopus 로고
    • Molecular cloning and DNA sequence analysis of Escherichia coli priA, the gene encoding the primosomal protein replication factor Y
    • Nurse, P., DiGate, R. J., Zavitz, K. H. & Marians, K. J. (1990). Molecular cloning and DNA sequence analysis of Escherichia coli priA, the gene encoding the primosomal protein replication factor Y. Proc. Natl Acad. Sci. USA, 87, 4615-4619.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 4615-4619
    • Nurse, P.1    DiGate, R.J.2    Zavitz, K.H.3    Marians, K.J.4
  • 34
    • 0022819963 scopus 로고
    • Evolution of biosynthetic pathways: A common ancestor for threonine synthase, threonine dehydratase and D-serine dehydratase
    • Parsot, C. (1986). Evolution of biosynthetic pathways: a common ancestor for threonine synthase, threonine dehydratase and D-serine dehydratase. EMBO J. 5, 3013-3019.
    • (1986) EMBO J. , vol.5 , pp. 3013-3019
    • Parsot, C.1
  • 35
    • 0028125575 scopus 로고
    • Initiator transfer RNAs
    • RajBhandary, U. L. (1994). Initiator transfer RNAs. J. Bacteriol. 176, 547-552.
    • (1994) J. Bacteriol. , vol.176 , pp. 547-552
    • Rajbhandary, U.L.1
  • 36
    • 0023100786 scopus 로고
    • Cloning, sequence, and expression of the lysostaphin gene from Staphylococcus simulans
    • Recsei, P. A., Gruss, A. D. & Novick, R. P. (1987). Cloning, sequence, and expression of the lysostaphin gene from Staphylococcus simulans. Proc. Natl Acad. Sci. USA, 84, 1127-1131.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 1127-1131
    • Recsei, P.A.1    Gruss, A.D.2    Novick, R.P.3
  • 37
    • 0027772882 scopus 로고
    • Directed evolution of bosynthetic pathways. Recruitment of cysteine thioethers for constructing the cell wall of Escherichia coli
    • Richaud, C., Mengin-Lecreulx, D., Pochet, S., Johnson, E. J., Cohen, G. N. & Marlière, P. (1993). Directed evolution of bosynthetic pathways. Recruitment of cysteine thioethers for constructing the cell wall of Escherichia coli. J. Biol. Chem. 268, 26827-26835.
    • (1993) J. Biol. Chem. , vol.268 , pp. 26827-26835
    • Richaud, C.1    Mengin-Lecreulx, D.2    Pochet, S.3    Johnson, E.J.4    Cohen, G.N.5    Marlière, P.6
  • 38
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol.Evol. 4, 406-425.
    • (1987) Mol. Biol.evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0024554286 scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Sprinzl, M., Hartmann, T., Weber, J., Blank, J. & Zeidler, R. (1989). Compilation of tRNA sequences and sequences of tRNA genes. Nucl. Acids Res. 17 (Sequences Suppl.), 1-172.
    • (1989) Nucl. Acids Res. , vol.17 , Issue.SEQUENCES SUPPL. , pp. 1-172
    • Sprinzl, M.1    Hartmann, T.2    Weber, J.3    Blank, J.4    Zeidler, R.5
  • 41
    • 0001300503 scopus 로고
    • Correlation between base composition of deoxyribonucleic acid and amino acid composition of protein
    • Sueoka, N. (1961). Correlation between base composition of deoxyribonucleic acid and amino acid composition of protein. Proc. Natl Acad. Sci. USA, 47, 1141-1149.
    • (1961) Proc. Natl Acad. Sci. USA , vol.47 , pp. 1141-1149
    • Sueoka, N.1
  • 42
    • 0014323081 scopus 로고
    • Protein chain initiation and deformylation in B. subtilis homogenates
    • Takeda, M. & Webster, R. E. (1968). Protein chain initiation and deformylation in B. subtilis homogenates. Proc. Natl Acad. Sci. USA, 60, 1487-1494.
    • (1968) Proc. Natl Acad. Sci. USA , vol.60 , pp. 1487-1494
    • Takeda, M.1    Webster, R.E.2
  • 43
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987). Bacterial evolution. Microbiol. Rev. 51, 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.