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Volumn 13, Issue 2, 2014, Pages 320-328

Understanding epigenetic changes in aging stem cells - a computational model approach

Author keywords

Aging of stem cells; Clonal competition; DNA methylation; Histone modification; Mathematical model; Population dynamics

Indexed keywords

DNA; HISTONE H3; HISTONE METHYLTRANSFERASE; LYSINE;

EID: 84895786009     PISSN: 14749718     EISSN: 14749726     Source Type: Journal    
DOI: 10.1111/acel.12177     Document Type: Article
Times cited : (33)

References (40)
  • 1
    • 78049246250 scopus 로고    scopus 로고
    • Fast signals and slow marks: the dynamics of histone modifications
    • Barth TK, Imhof A (2010) Fast signals and slow marks: the dynamics of histone modifications. Trends Biochem. Sci. 35, 618-626.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 618-626
    • Barth, T.K.1    Imhof, A.2
  • 2
    • 84875965163 scopus 로고    scopus 로고
    • Proliferation-dependent alterations of the DNA methylation landscape underlie hematopoietic stem cell aging
    • Beerman I, Bock C, Garrison BS, Smith ZD, Gu H, Meissner A, Rossi DJ (2013) Proliferation-dependent alterations of the DNA methylation landscape underlie hematopoietic stem cell aging. Cell Stem Cell 12, 413-425.
    • (2013) Cell Stem Cell , vol.12 , pp. 413-425
    • Beerman, I.1    Bock, C.2    Garrison, B.S.3    Smith, Z.D.4    Gu, H.5    Meissner, A.6    Rossi, D.J.7
  • 3
    • 84858316884 scopus 로고    scopus 로고
    • Hot topics in epigenetic mechanisms of aging: 2011
    • Berdasco M, Esteller M (2012) Hot topics in epigenetic mechanisms of aging: 2011. Aging Cell 11, 181-186.
    • (2012) Aging Cell , vol.11 , pp. 181-186
    • Berdasco, M.1    Esteller, M.2
  • 5
    • 77956061845 scopus 로고    scopus 로고
    • Gene expression density profiles characterize modes of genomic regulation: theory and experiment
    • Binder H, Wirth H, Galle J (2010) Gene expression density profiles characterize modes of genomic regulation: theory and experiment. J. Biotechnol. 149, 98-114.
    • (2010) J. Biotechnol. , vol.149 , pp. 98-114
    • Binder, H.1    Wirth, H.2    Galle, J.3
  • 6
    • 84876207842 scopus 로고    scopus 로고
    • Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation
    • Binder H, Steiner L, Przybilla J, Rohlf T, Prohaska S, Galle J (2013) Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation. Phys. Biol. 10, 026006.
    • (2013) Phys. Biol. , vol.10 , pp. 026006
    • Binder, H.1    Steiner, L.2    Przybilla, J.3    Rohlf, T.4    Prohaska, S.5    Galle, J.6
  • 7
    • 67349190247 scopus 로고    scopus 로고
    • Linking DNA methylation and histone modification: patterns and paradigms
    • Cedar H, Bergman Y (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 10, 295-304.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 295-304
    • Cedar, H.1    Bergman, Y.2
  • 8
    • 79959674418 scopus 로고    scopus 로고
    • Epigenetics of haematopoietic cell development
    • Cedar H, Bergman Y (2011) Epigenetics of haematopoietic cell development. Nat. Rev. Immunol. 11, 478-488.
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 478-488
    • Cedar, H.1    Bergman, Y.2
  • 10
    • 34249080596 scopus 로고    scopus 로고
    • Theoretical analysis of epigenetic cell memory by nucleosome modification
    • Dodd IB, Micheelsen MA, Sneppen K, Thon G (2007) Theoretical analysis of epigenetic cell memory by nucleosome modification. Cell 129, 813-822.
    • (2007) Cell , vol.129 , pp. 813-822
    • Dodd, I.B.1    Micheelsen, M.A.2    Sneppen, K.3    Thon, G.4
  • 11
    • 0037355911 scopus 로고    scopus 로고
    • Hypomethylation: one side of a larger picture
    • Dunn BK (2003) Hypomethylation: one side of a larger picture. Ann. N. Y. Acad. Sci. 983, 28-42.
    • (2003) Ann. N. Y. Acad. Sci. , vol.983 , pp. 28-42
    • Dunn, B.K.1
  • 12
    • 84855507486 scopus 로고    scopus 로고
    • Clonal analysis reveals multiple functional defects of aged murine hematopoietic stem cells
    • Dykstra B, Olthof S, Schreuder J, Ritsema M, de Haan G (2011) Clonal analysis reveals multiple functional defects of aged murine hematopoietic stem cells. J. Exp. Med. 208, 2691-2703.
    • (2011) J. Exp. Med. , vol.208 , pp. 2691-2703
    • Dykstra, B.1    Olthof, S.2    Schreuder, J.3    Ritsema, M.4    de Haan, G.5
  • 13
    • 62949220231 scopus 로고    scopus 로고
    • Molecules that promote or enhance reprogramming of somatic cells to induced pluripotent stem cells
    • Feng B, Ng JH, Heng JC, Ng HH (2009) Molecules that promote or enhance reprogramming of somatic cells to induced pluripotent stem cells. Cell Stem Cell 4, 301-312.
    • (2009) Cell Stem Cell , vol.4 , pp. 301-312
    • Feng, B.1    Ng, J.H.2    Heng, J.C.3    Ng, H.H.4
  • 15
    • 11244250625 scopus 로고    scopus 로고
    • Modeling the effect of deregulated proliferation and apoptosis on the growth dynamics of epithelial cell populations in vitro
    • Galle J, Loeffler M, Drasdo D (2005) Modeling the effect of deregulated proliferation and apoptosis on the growth dynamics of epithelial cell populations in vitro. Biophys. J. 88, 62-75.
    • (2005) Biophys. J. , vol.88 , pp. 62-75
    • Galle, J.1    Loeffler, M.2    Drasdo, D.3
  • 16
    • 84876909069 scopus 로고    scopus 로고
    • The ageing haematopoietic stem cell compartment
    • Geiger H, de Haan G, Florian MC (2013) The ageing haematopoietic stem cell compartment. Nat. Rev. Immunol. 13, 376-389.
    • (2013) Nat. Rev. Immunol. , vol.13 , pp. 376-389
    • Geiger, H.1    de Haan, G.2    Florian, M.C.3
  • 17
    • 79955952632 scopus 로고    scopus 로고
    • Cellular aging leads to functional heterogeneity of hematopoietic stem cells: a modeling perspective
    • Glauche I, Thielecke L, Roeder I (2011) Cellular aging leads to functional heterogeneity of hematopoietic stem cells: a modeling perspective. Aging Cell 10, 457-465.
    • (2011) Aging Cell , vol.10 , pp. 457-465
    • Glauche, I.1    Thielecke, L.2    Roeder, I.3
  • 18
    • 84855321183 scopus 로고    scopus 로고
    • Histone methylation makes its mark on longevity
    • Han S, Brunet A (2012) Histone methylation makes its mark on longevity. Trends Cell Biol. 22, 42-49.
    • (2012) Trends Cell Biol. , vol.22 , pp. 42-49
    • Han, S.1    Brunet, A.2
  • 20
    • 34548138278 scopus 로고    scopus 로고
    • Epigenetics: a historical overview
    • Holliday R (2006) Epigenetics: a historical overview. Epigenetics 1, 76-80.
    • (2006) Epigenetics , vol.1 , pp. 76-80
    • Holliday, R.1
  • 23
    • 45549101782 scopus 로고    scopus 로고
    • Cell divisions and mammalian aging: integrative biology insights from genes that regulate longevity
    • de Magalhaes JP, Faragher RG (2008) Cell divisions and mammalian aging: integrative biology insights from genes that regulate longevity. BioEssays 30, 567-578.
    • (2008) BioEssays , vol.30 , pp. 567-578
    • de Magalhaes, J.P.1    Faragher, R.G.2
  • 24
    • 63549135460 scopus 로고    scopus 로고
    • Meta-analysis of age-related gene expression profiles identifies common signatures of aging
    • de Magalhaes JP, Curado J, Church GM (2009) Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinformatics 25, 875-881.
    • (2009) Bioinformatics , vol.25 , pp. 875-881
    • de Magalhaes, J.P.1    Curado, J.2    Church, G.M.3
  • 25
    • 77949678340 scopus 로고    scopus 로고
    • Chromatin structure and the inheritance of epigenetic information
    • Margueron R, Reinberg D (2010) Chromatin structure and the inheritance of epigenetic information. Nature Rev. Genet. 11, 285-296.
    • (2010) Nature Rev. Genet. , vol.11 , pp. 285-296
    • Margueron, R.1    Reinberg, D.2
  • 28
    • 79960375714 scopus 로고    scopus 로고
    • Epigenetic regulation of aging stem cells
    • Pollina EA, Brunet A (2011) Epigenetic regulation of aging stem cells. Oncogene 30, 3105-3126.
    • (2011) Oncogene , vol.30 , pp. 3105-3126
    • Pollina, E.A.1    Brunet, A.2
  • 29
    • 84866291947 scopus 로고    scopus 로고
    • Is adult stem cell aging driven by conflicting modes of chromatin remodeling?
    • Przybilla J, Galle J, Rohlf T (2012) Is adult stem cell aging driven by conflicting modes of chromatin remodeling? BioEssays 34, 841-848.
    • (2012) BioEssays , vol.34 , pp. 841-848
    • Przybilla, J.1    Galle, J.2    Rohlf, T.3
  • 30
    • 0036322106 scopus 로고    scopus 로고
    • A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity
    • Roeder I, Loeffler M (2002) A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity. Exp. Hematol. 30, 853-861.
    • (2002) Exp. Hematol. , vol.30 , pp. 853-861
    • Roeder, I.1    Loeffler, M.2
  • 31
    • 84874194072 scopus 로고    scopus 로고
    • DNA methylation: roles in mammalian development
    • Smith ZD, Meissner A (2013) DNA methylation: roles in mammalian development. Nat. Rev. Genet. 14, 204-220.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 204-220
    • Smith, Z.D.1    Meissner, A.2
  • 32
    • 33748501233 scopus 로고    scopus 로고
    • Dynamics, stability and inheritance of somatic DNA methylation imprints
    • Sontag LB, Lorincz MC, Georg Luebeck E (2006) Dynamics, stability and inheritance of somatic DNA methylation imprints. J. Theor. Biol. 242, 890-899.
    • (2006) J. Theor. Biol. , vol.242 , pp. 890-899
    • Sontag, L.B.1    Lorincz, M.C.2    Georg Luebeck, E.3
  • 33
    • 79251600254 scopus 로고    scopus 로고
    • Progressive age-dependent DNA methylation changes start before adulthood in mouse tissues
    • Takasugi M (2011) Progressive age-dependent DNA methylation changes start before adulthood in mouse tissues. Mech. Ageing Dev. 132, 65-71.
    • (2011) Mech. Ageing Dev. , vol.132 , pp. 65-71
    • Takasugi, M.1
  • 35
    • 84864677516 scopus 로고    scopus 로고
    • Epigenetics: judge, jury and executioner of stem cell fate
    • Tollervey JR, Lunyak VV (2012) Epigenetics: judge, jury and executioner of stem cell fate. Epigenetics 7, 823-840.
    • (2012) Epigenetics , vol.7 , pp. 823-840
    • Tollervey, J.R.1    Lunyak, V.V.2
  • 36
    • 84886924368 scopus 로고    scopus 로고
    • Heterogeneity of young and aged murine hematopoietic stem cells revealed by quantitative clonal analysis using cellular barcoding
    • Verovskaya E, Broekhuis MJ, Zwart E, Ritsema M, van Os R, deHaan G, Bystrykh LV (2013) Heterogeneity of young and aged murine hematopoietic stem cells revealed by quantitative clonal analysis using cellular barcoding. Blood 122, 523-532.
    • (2013) Blood , vol.122 , pp. 523-532
    • Verovskaya, E.1    Broekhuis, M.J.2    Zwart, E.3    Ritsema, M.4    van Os, R.5    de Haan, G.6    Bystrykh, L.V.7
  • 39
    • 77950462427 scopus 로고    scopus 로고
    • Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly
    • Xu M, Long C, Chen X, Huang C, Chen S, Zhu B (2010) Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly. Science 328, 94-98.
    • (2010) Science , vol.328 , pp. 94-98
    • Xu, M.1    Long, C.2    Chen, X.3    Huang, C.4    Chen, S.5    Zhu, B.6
  • 40
    • 34247621290 scopus 로고    scopus 로고
    • Rho GTPase Cdc42 coordinates hematopoietic stem cell quiescence and niche interaction in the bone marrow
    • Yang L, Wang L, Geiger H, Cancelas JA, Mo J, Zheng Y (2007) Rho GTPase Cdc42 coordinates hematopoietic stem cell quiescence and niche interaction in the bone marrow. Proc Natl Acad Sci USA 104, 5091-5096.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 5091-5096
    • Yang, L.1    Wang, L.2    Geiger, H.3    Cancelas, J.A.4    Mo, J.5    Zheng, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.