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Volumn 39, Issue 15, 2011, Pages 6475-6488

Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; IMMUNOGLOBULIN F(AB) FRAGMENT; FLUORESCENT DYE; HISTONE; HISTONE DEACETYLASE INHIBITOR; HYDROXAMIC ACID; LYSINE; MONOCLONAL ANTIBODY; TRICHOSTATIN A;

EID: 80055088176     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr343     Document Type: Article
Times cited : (193)

References (39)
  • 1
    • 77952956167 scopus 로고    scopus 로고
    • Decoding signalling networks by mass spectrometry-based proteomics
    • Choudhary, C. and Mann, M. (2010) Decoding signalling networks by mass spectrometry-based proteomics. Nat. Rev. Mol. Cell. Biol., 11, 427-439.
    • (2010) Nat. Rev Mol. Cell. Biol. , vol.11 , pp. 427-439
    • Choudhary, C.1    Mann, M.2
  • 2
    • 70349124959 scopus 로고    scopus 로고
    • Fluorescent biosensors for real-time tracking of post-translational modification dynamics
    • Aye-Han, N.-N., Ni, Q. and Zhang, J. (2009) Fluorescent biosensors for real-time tracking of post-translational modification dynamics. Curr. Opin. Chem. Biol., 13, 392-397.
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , pp. 392-397
    • Aye-Han, N.-N.1    Ni, Q.2    Zhang, J.3
  • 3
    • 73349092441 scopus 로고    scopus 로고
    • Histones: Annotating chromatin
    • Campos, E.I. and Reinberg, D. (2009) Histones: annotating chromatin. Annu. Rev. Genet., 43, 559-599.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 559-599
    • Campos, E.I.1    Reinberg, D.2
  • 4
    • 33746457753 scopus 로고    scopus 로고
    • Enhanced Histone Acetylation and Transcription: A Dynamic Perspective
    • DOI 10.1016/j.molcel.2006.06.017, PII S1097276506004321
    • Clayton, A.L., Hazzalin, C.A. and Mahadevan, L.C. (2006) Enhanced histone acetylation and transcription: a dynamic perspective. Mol. Cell, 23, 289-296. (Pubitemid 44128853)
    • (2006) Molecular Cell , vol.23 , Issue.3 , pp. 289-296
    • Clayton, A.L.1    Hazzalin, C.A.2    Mahadevan, L.C.3
  • 6
    • 34447522791 scopus 로고    scopus 로고
    • Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice
    • DOI 10.1242/dev.005611
    • Seki, Y., Yamaji, M., Yabuta, Y., Sano, M., Shigeta, M., Matsui, Y., Saga, Y., Tachibana, M., Shinkai, Y. and Saitou, M. (2007) Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice. Development, 134, 2627-2638. (Pubitemid 47225959)
    • (2007) Development , vol.134 , Issue.14 , pp. 2627-2638
    • Sekl, Y.1    Yamaji, M.2    Yabuta, Y.3    Sano, M.4    Shigeta, M.5    Matsui, Y.6    Saga, Y.7    Tachibana, M.8    Shinkai, Y.9    Saitou, M.10
  • 7
    • 79955029493 scopus 로고    scopus 로고
    • Epigenetic reprogramming and development: A unique heterochromatin organization in the preimplantation mouse embryo
    • Burton, A. and Torres-Padilla, M.-E. (2010) Epigenetic reprogramming and development: a unique heterochromatin organization in the preimplantation mouse embryo. Brief. Funct. Genomics, 9, 444-454.
    • (2010) Brief. Funct. Genomics , vol.9 , pp. 444-454
    • Burton, A.1    Torres-Padilla, M.-E.2
  • 8
    • 77954814488 scopus 로고    scopus 로고
    • Visualization of DNA methylation and histone modifications in living cells
    • Kimura, H., Hayashi-Takanaka, Y. and Yamagata, K. (2010) Visualization of DNA methylation and histone modifications in living cells. Curr. Opin. Cell. Biol., 22, 412-418.
    • (2010) Curr. Opin. Cell. Biol. , vol.22 , pp. 412-418
    • Kimura, H.1    Hayashi-Takanaka, Y.2    Yamagata, K.3
  • 10
    • 74049148451 scopus 로고    scopus 로고
    • Visualizing histone modifications in living cells: Spatiotemporal dynamics of H3 phosphorylation during interphase
    • Hayashi-Takanaka, Y., Yamagata, K., Nozaki, N. and Kimura, H. (2009) Visualizing histone modifications in living cells: spatiotemporal dynamics of H3 phosphorylation during interphase. J. Cell. Biol., 187, 781-790.
    • (2009) J. Cell. Biol. , vol.187 , pp. 781-790
    • Hayashi-Takanaka, Y.1    Yamagata, K.2    Nozaki, N.3    Kimura, H.4
  • 11
    • 44449177123 scopus 로고    scopus 로고
    • The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies
    • DOI 10.1247/csf.07035
    • Kimura, H., Hayashi-Takanaka, Y., Goto, Y., Takizawa, N. and Nozaki, N. (2008) The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies. Cell Struct. Funct., 33, 61-73. (Pubitemid 351860902)
    • (2008) Cell Structure and Function , vol.33 , Issue.1 , pp. 61-73
    • Kimura, H.1    Hayashi-Takanaka, Y.2    Goto, Y.3    Takizawa, N.4    Nozaki, N.5
  • 14
    • 0037174948 scopus 로고    scopus 로고
    • A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates: Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein
    • DOI 10.1074/jbc.M206194200
    • Ohta, S., Shiomi, Y., Sugimoto, K., Obuse, C. and Tsurimoto, T. (2002) A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. J. Biol. Chem., 277, 40362-40367. (Pubitemid 35215609)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.43 , pp. 40362-40367
    • Ohta, S.1    Shiomi, Y.2    Sugimoto, K.3    Obuse, C.4    Tsurimoto, T.5
  • 15
    • 0032568321 scopus 로고    scopus 로고
    • Histone-GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells
    • Kanda, T., Sullivan, K.F. and Wahl, G.M. (1998) Histone-GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells. Curr. Biol., 8, 377-385. (Pubitemid 28173996)
    • (1998) Current Biology , vol.8 , Issue.7 , pp. 377-385
    • Kanda, T.1    Sullivan, K.F.2    Wahl, G.M.3
  • 18
    • 0023856424 scopus 로고
    • Glass beads load macromolecules into living cells
    • McNeil, P.L. and Warder, E. (1987) Glass beads load macromolecules into living cells. J. Cell. Sci., 88(Pt 5), 669-678. (Pubitemid 18029922)
    • (1988) Journal of Cell Science , vol.88 , Issue.PART V , pp. 669-678
    • McNeil, P.L.1    Warder, E.2
  • 19
    • 0033535323 scopus 로고    scopus 로고
    • Direct imaging of DNA in living cells reveals the dynamics of chromosome formation
    • DOI 10.1083/jcb.144.5.813
    • Manders, E.M., Kimura, H. and Cook, P.R. (1999) Direct imaging of DNA in living cells reveals the dynamics of chromosome formation. J. Cell Biol., 144, 813-821. (Pubitemid 29238960)
    • (1999) Journal of Cell Biology , vol.144 , Issue.5 , pp. 813-821
    • Manders, E.M.M.1    Kimura, H.2    Cook, P.R.3
  • 20
    • 68149178628 scopus 로고    scopus 로고
    • Long-term six-dimensional live-cell imaging for the mouse preimplantation embryo that does not affect full-term development
    • Yamagata, K., Suetsugu, R. and Wakayama, T. (2009) Long-term, six-dimensional live-cell imaging for the mouse preimplantation embryo that does not affect full-term development. J. Reprod. Dev., 55, 343-350.
    • (2009) J. Reprod. Dev. , vol.55 , pp. 343-350
    • Yamagata, K.1    Suetsugu, R.2    Wakayama, T.3
  • 22
    • 33947695267 scopus 로고    scopus 로고
    • Dynamic changes in the epigenomic state and nuclear organization of differentiating mouse embryonic stem cells
    • DOI 10.1111/j.1365-2443.2007.01063.x
    • Kobayakawa, S., Miike, K., Nakao, M. and Abe, K. (2007) Dynamic changes in the epigenomic state and nuclear organization of differentiating mouse embryonic stem cells. Genes Cells, 12, 447-460. (Pubitemid 46488581)
    • (2007) Genes to Cells , vol.12 , Issue.4 , pp. 447-460
    • Kobayakawa, S.1    Miike, K.2    Nakao, M.3    Abe, K.4
  • 23
    • 0037099413 scopus 로고    scopus 로고
    • G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis
    • DOI 10.1101/gad.989402
    • Tachibana, M., Sugimoto, K., Nozaki, M., Ueda, J., Ohta, T., Ohki, M., Fukuda, M., Takeda, N., Niida, H., Kato, H. et al. (2002) G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis. Genes Dev., 16, 1779-1791. (Pubitemid 34803894)
    • (2002) Genes and Development , vol.16 , Issue.14 , pp. 1779-1791
    • Tachibana, M.1    Sugimoto, K.2    Nozaki, M.3    Ueda, J.4    Ohta, T.5    Ohki, M.6    Fukuda, M.7    Takeda, N.8    Niida, H.9    Kato, H.10    Shinkai, Y.11
  • 24
    • 0042379770 scopus 로고    scopus 로고
    • Chromatin of the Barr body: Histone and non-histone proteins associated with or excluded from the inactive X chromosome
    • DOI 10.1093/hmg/ddg229
    • Chadwick, B.P. and Willard, H.F. (2003) Chromatin of the Barr body: histone and non-histone proteins associated with or excluded from the inactive X chromosome. Hum. Mol. Genet., 12, 2167-2178. (Pubitemid 37098987)
    • (2003) Human Molecular Genetics , vol.12 , Issue.17 , pp. 2167-2178
    • Chadwick, B.P.1    Willard, H.F.2
  • 26
    • 34249006523 scopus 로고    scopus 로고
    • Perinucleolar Targeting of the Inactive X during S Phase: Evidence for a Role in the Maintenance of Silencing
    • DOI 10.1016/j.cell.2007.03.036, PII S0092867407004527
    • Zhang, L.-F., Huynh, K.D. and Lee, J.T. (2007) Perinucleolar targeting of the inactive X during S phase: evidence for a role in the maintenance of silencing. Cell, 129, 693-706. (Pubitemid 46802377)
    • (2007) Cell , vol.129 , Issue.4 , pp. 693-706
    • Zhang, L.-F.1    Huynh, K.D.2    Lee, J.T.3
  • 27
    • 77955393744 scopus 로고    scopus 로고
    • Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells
    • Müller, I., Boyle, S., Singer, R.H., Bickmore, W.A. and Chubb, J.R. (2010) Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells. PLoS ONE, 5, e11560.
    • (2010) PLoS ONE , vol.5
    • Müller, I.1    Boyle, S.2    Singer, R.H.3    Bickmore, W.A.4    Chubb, J.R.5
  • 28
    • 77950548496 scopus 로고    scopus 로고
    • Dissecting the binding mechanism of the linker histone in live cells: An integrated FRAP analysis
    • Stasevich, T.J., Mueller, F., Brown, D.T. and McNally, J.G. (2010) Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis. EMBO J., 29, 1225-1234.
    • (2010) EMBO J. , vol.29 , pp. 1225-1234
    • Stasevich, T.J.1    Mueller, F.2    Brown, D.T.3    McNally, J.G.4
  • 29
    • 33947492804 scopus 로고    scopus 로고
    • Cross-talk between histone modifications in response to histone deacetylase inhibitors: MLL4 links histone H3 acetylation and histone H3K4 methylation
    • DOI 10.1074/jbc.M606773200
    • Nightingale, K.P., Gendreizig, S., White, D.A., Bradbury, C., Hollfelder, F. and Turner, B.M. (2007) Cross-talk between histone modifications in response to histone deacetylase inhibitors: MLL4 links histone H3 acetylation and histone H3K4 methylation. J. Biol. Chem., 282, 4408-4416. (Pubitemid 47100929)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.7 , pp. 4408-4416
    • Nightingale, K.P.1    Gendreizig, S.2    White, D.A.3    Bradbury, C.4    Hollfelder, F.5    Turner, B.M.6
  • 30
    • 78651289082 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors stimulate histone H3 lysine 4 methylation in part via transcriptional repression of histone H3 lysine 4 demethylases
    • Huang, P.-H., Chen, C.-H., Chou, C.-C., Sargeant, A.M., Kulp, S.K., Teng, C.-M., Byrd, J.C. and Chen, C.-S. (2011) Histone deacetylase inhibitors stimulate histone H3 lysine 4 methylation in part via transcriptional repression of histone H3 lysine 4 demethylases. Mol. Pharmacol., 79, 197-206.
    • (2011) Mol. Pharmacol. , vol.79 , pp. 197-206
    • Huang, P.-H.1    Chen, C.-H.2    Chou, C.-C.3    Sargeant, A.M.4    Kulp, S.K.5    Teng, C.-M.6    Byrd, J.C.7    Chen, C.-S.8
  • 31
    • 0027465101 scopus 로고
    • Multiple chromosomal populations of topoisomerase II detected in vivo by time-lapse, three-dimensional wide-field microscopy
    • DOI 10.1016/0092-8674(93)90163-K
    • Swedlow, J.R., Sedat, J.W. and Agard, D.A. (1993) Multiple chromosomal populations of topoisomerase II detected in vivo by time-lapse, three-dimensional wide-field microscopy. Cell, 73, 97-108. (Pubitemid 23115452)
    • (1993) Cell , vol.73 , Issue.1 , pp. 97-108
    • Swedlow, J.R.1    Sedat, J.W.2    Agard, D.A.3
  • 32
    • 0030004472 scopus 로고    scopus 로고
    • Time-resolved, in vivo studies of mitotic spindle formation and nuclear lamina breakdown in Drosophila early embryos
    • Paddy, M.R., Saumweber, H., Agard, D.A. and Sedat, J.W. (1996) Time-resolved, in vivo studies of mitotic spindle formation and nuclear lamina breakdown in Drosophila early embryos. J. Cell. Sci., 109(Pt 3), 591-607. (Pubitemid 26092681)
    • (1996) Journal of Cell Science , vol.109 , Issue.3 , pp. 591-607
    • Paddy, M.R.1    Saumweber, H.2    Agard, D.A.3    Sedat, J.W.4
  • 34
    • 14844286976 scopus 로고    scopus 로고
    • Dynamic chromatin modifications characterise the first cell cycle in mouse embryos
    • DOI 10.1016/j.ydbio.2005.01.025
    • Santos, F., Peters, A.H., Otte, A.P., Reik, W. and Dean, W. (2005) Dynamic chromatin modifications characterise the first cell cycle in mouse embryos. Dev. Biol., 280, 225-236. (Pubitemid 40342755)
    • (2005) Developmental Biology , vol.280 , Issue.1 , pp. 225-236
    • Santos, F.1    Peters, A.H.2    Otte, A.P.3    Reik, W.4    Dean, W.5
  • 36
    • 77953973940 scopus 로고    scopus 로고
    • Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes
    • Pasini, D., Malatesta, M., Jung, H.R., Walfridsson, J., Willer, A., Olsson, L., Skotte, J., Wutz, A., Porse, B., Jensen, O.N. et al. (2010) Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes. Nucleic Acids Res., 38, 4958-4969.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4958-4969
    • Pasini, D.1    Malatesta, M.2    Jung, H.R.3    Walfridsson, J.4    Willer, A.5    Olsson, L.6    Skotte, J.7    Wutz, A.8    Porse, B.9    Jensen, O.N.10
  • 37
    • 77956097175 scopus 로고    scopus 로고
    • Effect of trichostatin A on chromatin remodeling, histone modifications, DNA replication, and transcriptional activity in cloned mouse embryos
    • Bui, H.-T., Wakayama, S., Kishigami, S., Park, K.-K., Kim, J.-H., Thuan, N.V. and Wakayama, T. (2010) Effect of trichostatin A on chromatin remodeling, histone modifications, DNA replication, and transcriptional activity in cloned mouse embryos. Biol. Reprod., 83, 454-463.
    • (2010) Biol. Reprod. , vol.83 , pp. 454-463
    • Bui, H.-T.1    Wakayama, S.2    Kishigami, S.3    Park, K.-K.4    Kim, J.-H.5    Thuan, N.V.6    Wakayama, T.7
  • 38
    • 70349456654 scopus 로고    scopus 로고
    • Recent advances in the use of cell-penetrating peptides for medical and biological applications
    • Fonseca, S.B., Pereira, M.P. and Kelley, S.O. (2009) Recent advances in the use of cell-penetrating peptides for medical and biological applications. Adv. Drug Deliv. Rev., 61, 953-964.
    • (2009) Adv. Drug Deliv. Rev. , vol.61 , pp. 953-964
    • Fonseca, S.B.1    Pereira, M.P.2    Kelley, S.O.3


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