-
1
-
-
84860115640
-
Robust design and optimization of retroaldol enzymes
-
Althoff E.A., Wang L., Jiang L., Giger L., Lassila J.K., et al. Robust design and optimization of retroaldol enzymes. Protein Sci. 2012, 21:717-726.
-
(2012)
Protein Sci.
, vol.21
, pp. 717-726
-
-
Althoff, E.A.1
Wang, L.2
Jiang, L.3
Giger, L.4
Lassila, J.K.5
-
2
-
-
0030994634
-
Yeast surface display for screening combinatorial polypeptide libraries
-
Boder E.T., Wittrup K.D. Yeast surface display for screening combinatorial polypeptide libraries. Nat. Biotechnol. 1997, 15:553-557.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 553-557
-
-
Boder, E.T.1
Wittrup, K.D.2
-
3
-
-
80054856259
-
DARPins and other repeat protein scaffolds: advances in engineering and applications
-
Boersma Y.L., Plückthun A. DARPins and other repeat protein scaffolds: advances in engineering and applications. Curr. Opin. Biotechnol. 2011, 22:849-857.
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 849-857
-
-
Boersma, Y.L.1
Plückthun, A.2
-
4
-
-
0038554077
-
Biology of the p21-activated kinases
-
Bokoch G.M. Biology of the p21-activated kinases. Annu. Rev. Biochem. 2003, 72:743-781.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 743-781
-
-
Bokoch, G.M.1
-
5
-
-
79953170194
-
Dissecting protein-protein interactions using directed evolution
-
Bonsor D.A., Sunberg E.J. Dissecting protein-protein interactions using directed evolution. Biochemistry 2011, 50:2394-2402.
-
(2011)
Biochemistry
, vol.50
, pp. 2394-2402
-
-
Bonsor, D.A.1
Sunberg, E.J.2
-
7
-
-
0035067076
-
High-sensitivity fluorescence anisotropy detection of protein-folding events: application to α-lactalbumin
-
Canet D., Doering K., Dobson C.M., Dupont Y. High-sensitivity fluorescence anisotropy detection of protein-folding events: application to α-lactalbumin. Biophys. J. 2001, 80:1996-2003.
-
(2001)
Biophys. J.
, vol.80
, pp. 1996-2003
-
-
Canet, D.1
Doering, K.2
Dobson, C.M.3
Dupont, Y.4
-
8
-
-
84862541366
-
Designing specific protein-protein interactions using computation, experimental library screening, or integrated methods
-
Chen T.S., Keating A.E. Designing specific protein-protein interactions using computation, experimental library screening, or integrated methods. Protein Sci. 2012, 21:949-963.
-
(2012)
Protein Sci.
, vol.21
, pp. 949-963
-
-
Chen, T.S.1
Keating, A.E.2
-
9
-
-
4043170599
-
Engineering antibody affinity by yeast surface display
-
Colby D.W., Kellogg B.A., Graff C.P., Yeung Y.A., Swers J.S., et al. Engineering antibody affinity by yeast surface display. Protein Eng. 2004, 388:348-358.
-
(2004)
Protein Eng.
, vol.388
, pp. 348-358
-
-
Colby, D.W.1
Kellogg, B.A.2
Graff, C.P.3
Yeung, Y.A.4
Swers, J.S.5
-
10
-
-
46049096322
-
Ab initio folding of proteins with all-atom discrete molecular dynamics
-
Ding F., Tsao D., Nie H., Dokholyan N.V. Ab initio folding of proteins with all-atom discrete molecular dynamics. Structure 2008, 16:1010-1018.
-
(2008)
Structure
, vol.16
, pp. 1010-1018
-
-
Ding, F.1
Tsao, D.2
Nie, H.3
Dokholyan, N.V.4
-
11
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson H.J., Wright P.E. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 2005, 6:197-208.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
12
-
-
79956017135
-
Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
-
Fleishman S.J., Whitehead T.A., Ekiert D.C., Dreyfus C., Corn J.E., et al. Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science 2011, 332:816-821.
-
(2011)
Science
, vol.332
, pp. 816-821
-
-
Fleishman, S.J.1
Whitehead, T.A.2
Ekiert, D.C.3
Dreyfus, C.4
Corn, J.E.5
-
13
-
-
34648832245
-
Yeast surface display for protein engineering and characterization
-
Gai S.A., Wittrup K.D. Yeast surface display for protein engineering and characterization. Curr. Opin. Struct. Biol. 2007, 17:467-473.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 467-473
-
-
Gai, S.A.1
Wittrup, K.D.2
-
14
-
-
67649872364
-
Engineered protein scaffolds as next-generation antibody therapeutics
-
Gebauer M., Skerra A. Engineered protein scaffolds as next-generation antibody therapeutics. Curr. Opin. Struct. Biol. 2009, 13:245-255.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 245-255
-
-
Gebauer, M.1
Skerra, A.2
-
15
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray J.J., Moughon S., Wang C., Schueler-Furman O., Kuhlman B., et al. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J. Mol. Biol. 2003, 331:281-299.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
-
16
-
-
65249171530
-
Design of protein-interaction specificity gives selective bZIP-binding peptides
-
Grigoryan G., Reinke A.W., Keating A.E. Design of protein-interaction specificity gives selective bZIP-binding peptides. Nature 2009, 458:859-865.
-
(2009)
Nature
, vol.458
, pp. 859-865
-
-
Grigoryan, G.1
Reinke, A.W.2
Keating, A.E.3
-
17
-
-
84895019820
-
-
Prediction of N-glycosylation sites in human proteins. In preparation.
-
Gupta, R., Jung, E., Brunak, S., 2004. Prediction of N-glycosylation sites in human proteins. In preparation. http://www.cbe.dtu.dk/services/NetNGlyc/.
-
(2004)
-
-
Gupta, R.1
Jung, E.2
Brunak, S.3
-
18
-
-
36448933773
-
A de novo designed protein-protein interface
-
Huang P.S., Love J.J., Mayo S.L. A de novo designed protein-protein interface. Protein Sci. 2007, 16:2770-2774.
-
(2007)
Protein Sci.
, vol.16
, pp. 2770-2774
-
-
Huang, P.S.1
Love, J.J.2
Mayo, S.L.3
-
19
-
-
79960698472
-
Water suppression that works - excitation sculpting using arbitrary wave-forms and pulsed-field gradients
-
Hwang T.L., Shaka A.J. Water suppression that works - excitation sculpting using arbitrary wave-forms and pulsed-field gradients. J. Magn. Reson. Ser. A 1995, 112:275-279.
-
(1995)
J. Magn. Reson. Ser. A
, vol.112
, pp. 275-279
-
-
Hwang, T.L.1
Shaka, A.J.2
-
20
-
-
77953808264
-
Computational design of a PAK1 binding protein
-
Jha R.K., Leaver-Fay A., Yin S.Y., Wu Y.B., Butterfoss G.L., et al. Computational design of a PAK1 binding protein. J. Mol. Biol. 2010, 400:257-270.
-
(2010)
J. Mol. Biol.
, vol.400
, pp. 257-270
-
-
Jha, R.K.1
Leaver-Fay, A.2
Yin, S.Y.3
Wu, Y.B.4
Butterfoss, G.L.5
-
21
-
-
0033562629
-
Analyzing protein circular dichroism spectra for accurate secondary structures
-
Johnson W.C. Analyzing protein circular dichroism spectra for accurate secondary structures. Proteins 1999, 35:307-312.
-
(1999)
Proteins
, vol.35
, pp. 307-312
-
-
Johnson, W.C.1
-
23
-
-
0035711194
-
Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency
-
Kapust R.B., Tozser J., Fox J.D., Anderson D.E., Cherry S., et al. Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency. Protein Eng. 2001, 14:993-1000.
-
(2001)
Protein Eng.
, vol.14
, pp. 993-1000
-
-
Kapust, R.B.1
Tozser, J.2
Fox, J.D.3
Anderson, D.E.4
Cherry, S.5
-
24
-
-
79954633234
-
A de novo protein binding pair by computational design and directed evolution
-
Karanicolas J., Corn J.E., Chen I., Joachimiak L.A., Dym O., et al. A de novo protein binding pair by computational design and directed evolution. Mol. Cell 2011, 42:250-260.
-
(2011)
Mol. Cell
, vol.42
, pp. 250-260
-
-
Karanicolas, J.1
Corn, J.E.2
Chen, I.3
Joachimiak, L.A.4
Dym, O.5
-
25
-
-
84863000087
-
Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59
-
Khersonsky O., Kiss G., Röthlisberger D., Dym O., Albeck S., et al. Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59. Proc. Natl. Acad. Sci. USA 2012, 109:10358-10363.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10358-10363
-
-
Khersonsky, O.1
Kiss, G.2
Röthlisberger, D.3
Dym, O.4
Albeck, S.5
-
26
-
-
1842577654
-
Computational redesign of protein-protein interaction specificity
-
Kortemme T., Joachimiak L.A., Bullock A.N., Schuler A.D., Stoddard B.L., et al. Computational redesign of protein-protein interaction specificity. Nat. Struct. Mol. Biol. 2004, 11:371-379.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 371-379
-
-
Kortemme, T.1
Joachimiak, L.A.2
Bullock, A.N.3
Schuler, A.D.4
Stoddard, B.L.5
-
27
-
-
0024417964
-
The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure
-
Kuwajima K. The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins 1989, 6:87-103.
-
(1989)
Proteins
, vol.6
, pp. 87-103
-
-
Kuwajima, K.1
-
28
-
-
0034604338
-
Structure of PAK1 in an autoinhibited conformation reveals a multistage activation switch
-
Lei M., Lu W.G., Meng W.Y., Parrini M.C., Eck M.J., et al. Structure of PAK1 in an autoinhibited conformation reveals a multistage activation switch. Cell 2000, 102:387-397.
-
(2000)
Cell
, vol.102
, pp. 387-397
-
-
Lei, M.1
Lu, W.G.2
Meng, W.Y.3
Parrini, M.C.4
Eck, M.J.5
-
29
-
-
0002694056
-
A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction
-
Leung D.W., Chen E., Goeddel D.V. A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction. Technique 1989, 1:11-15.
-
(1989)
Technique
, vol.1
, pp. 11-15
-
-
Leung, D.W.1
Chen, E.2
Goeddel, D.V.3
-
30
-
-
3142685154
-
In-vitro protein evolution by ribosome display and mRNA display
-
Lipovsek D., Plückthun A. In-vitro protein evolution by ribosome display and mRNA display. J. Immunol. Methods 2004, 294:51-67.
-
(2004)
J. Immunol. Methods
, vol.294
, pp. 51-67
-
-
Lipovsek, D.1
Plückthun, A.2
-
31
-
-
34248335852
-
Nonnatural protein-protein interaction-pair design by key residues grafting
-
Liu S., Zhu X., Liang H., Cao A., Chang Z., et al. Nonnatural protein-protein interaction-pair design by key residues grafting. Proc. Natl. Acad. Sci. USA 2007, 104:5330-5335.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5330-5335
-
-
Liu, S.1
Zhu, X.2
Liang, H.3
Cao, A.4
Chang, Z.5
-
32
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte L., Chothia C., Janin J. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 1999, 285:2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
33
-
-
0028592703
-
An in vitro polysome display system for identifying ligands from very large peptide libraries
-
Mattheakis L.C., Bhatt R.R., Dower W.J. An in vitro polysome display system for identifying ligands from very large peptide libraries. Proc. Natl. Acad. Sci. USA 1994, 91:9022-9026.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9022-9026
-
-
Mattheakis, L.C.1
Bhatt, R.R.2
Dower, W.J.3
-
34
-
-
54249137135
-
Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments
-
Potapov V., Reichmann D., Abramovich R., Filchtinski D., Zohar N., et al. Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments. J. Mol. Biol. 2008, 384:109-119.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 109-119
-
-
Potapov, V.1
Reichmann, D.2
Abramovich, R.3
Filchtinski, D.4
Zohar, N.5
-
35
-
-
0025212107
-
Evidence for a molten globule state as a general intermediate in protein folding
-
Ptitsyn O.B., Pain R.H., Semisotnov G.V., Zerovnik E., Razgulyaev O.I. Evidence for a molten globule state as a general intermediate in protein folding. FEBS Lett. 1990, 262:20-24.
-
(1990)
FEBS Lett.
, vol.262
, pp. 20-24
-
-
Ptitsyn, O.B.1
Pain, R.H.2
Semisotnov, G.V.3
Zerovnik, E.4
Razgulyaev, O.I.5
-
36
-
-
84861114271
-
Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity
-
Roberts K.E., Cushing P.R., Boisguerin P., Madden D.R., Donald B.R. Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity. PloS Comput. Biol. 2012, 8:e1002477.
-
(2012)
PloS Comput. Biol.
, vol.8
-
-
Roberts, K.E.1
Cushing, P.R.2
Boisguerin, P.3
Madden, D.R.4
Donald, B.R.5
-
38
-
-
23044496736
-
Protein-protein interactions in human disease
-
Ryan D.P., Matthews J.M. Protein-protein interactions in human disease. Curr. Opin. Struct. Biol. 2005, 15:441-446.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 441-446
-
-
Ryan, D.P.1
Matthews, J.M.2
-
41
-
-
62449289261
-
Antibody affinity optimization using yeast cell surface display
-
Siegel R.W. Antibody affinity optimization using yeast cell surface display. Methods Mol. Biol. 2009, 504:351-383.
-
(2009)
Methods Mol. Biol.
, vol.504
, pp. 351-383
-
-
Siegel, R.W.1
-
43
-
-
0034672325
-
Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
-
Sreerama N., Woody R.W. Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 2000, 287:252-260.
-
(2000)
Anal. Biochem.
, vol.287
, pp. 252-260
-
-
Sreerama, N.1
Woody, R.W.2
-
44
-
-
0028050350
-
Rapid evolution of a protein in vitro by DNA shuffling
-
Stemmer W.P.C. Rapid evolution of a protein in vitro by DNA shuffling. Nature 1994, 370:389-391.
-
(1994)
Nature
, vol.370
, pp. 389-391
-
-
Stemmer, W.P.C.1
-
45
-
-
0025283867
-
Use of T7 RNA-polymerase to direct expression of cloned genes
-
Studier F.W., Rosenberg A.H., Dunn J.J., Dubendorff J.W. Use of T7 RNA-polymerase to direct expression of cloned genes. Methods Enzymol. 1990, 185:60-89.
-
(1990)
Methods Enzymol.
, vol.185
, pp. 60-89
-
-
Studier, F.W.1
Rosenberg, A.H.2
Dunn, J.J.3
Dubendorff, J.W.4
-
46
-
-
33646725723
-
Probing a protein-protein interaction by in vitro evolution
-
Thom G., Cockroft A.C., Buchanan A.G., Candotti C.J., Cohen E.S., et al. Probing a protein-protein interaction by in vitro evolution. Proc. Natl. Acad. Sci. USA 2006, 103:7619-7624.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 7619-7624
-
-
Thom, G.1
Cockroft, A.C.2
Buchanan, A.G.3
Candotti, C.J.4
Cohen, E.S.5
-
47
-
-
20444376186
-
The interplay between structure and function in intrinsically unstructured proteins
-
Tompa P. The interplay between structure and function in intrinsically unstructured proteins. FEBS Lett. 2005, 579:3346-3354.
-
(2005)
FEBS Lett.
, vol.579
, pp. 3346-3354
-
-
Tompa, P.1
-
48
-
-
34548861782
-
Protein-protein docking with backbone flexibility
-
Wang C., Bradley P., Baker D. Protein-protein docking with backbone flexibility. J. Mol. Biol. 2007, 373:503-519.
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 503-519
-
-
Wang, C.1
Bradley, P.2
Baker, D.3
-
49
-
-
0027962758
-
Making antibodies by phage display technology
-
Winter G., Griffiths A.D., Hawkins R.E., Hoogenboom H.R. Making antibodies by phage display technology. Annu. Rev. Immunol. 1994, 12:433-455.
-
(1994)
Annu. Rev. Immunol.
, vol.12
, pp. 433-455
-
-
Winter, G.1
Griffiths, A.D.2
Hawkins, R.E.3
Hoogenboom, H.R.4
|