-
1
-
-
33745512801
-
Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays
-
Baev, M.V., Baev, D., Radek, A.J., and Campbell, J.W. (2006a) Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays. Appl Microbiol Biotechnol 71: 323-328.
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 323-328
-
-
Baev, M.V.1
Baev, D.2
Radek, A.J.3
Campbell, J.W.4
-
2
-
-
33745491296
-
Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of amino acids, peptides, and nucleotides with transcriptional microarrays
-
Baev, M.V., Baev, D., Radek, A.J., and Campbell, J.W. (2006b) Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of amino acids, peptides, and nucleotides with transcriptional microarrays. Appl Microbiol Biotechnol 71: 317-322.
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 317-322
-
-
Baev, M.V.1
Baev, D.2
Radek, A.J.3
Campbell, J.W.4
-
3
-
-
33745482197
-
Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of sugars, alcohols, and organic acids with transcriptional microarrays
-
Baev, M.V., Baev, D., Radek, A.J., and Campbell, J.W. (2006c) Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of sugars, alcohols, and organic acids with transcriptional microarrays. Appl Microbiol Biotechnol 71: 310-316.
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 310-316
-
-
Baev, M.V.1
Baev, D.2
Radek, A.J.3
Campbell, J.W.4
-
4
-
-
34247263879
-
Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity
-
Bantinaki, E., Kassen, R., Knight, C.G., Robinson, Z., Spiers, A.J., and Rainey, P.B. (2007) Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics 176: 441-453.
-
(2007)
Genetics
, vol.176
, pp. 441-453
-
-
Bantinaki, E.1
Kassen, R.2
Knight, C.G.3
Robinson, Z.4
Spiers, A.J.5
Rainey, P.B.6
-
5
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J.E., Yu, D.S., Yoon, S.H., Jeong, H., Oh, T.K., Schneider, D., etal. (2009) Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461: 1243-1247.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
-
6
-
-
0026454741
-
Evolutionary adaptation to temperature. I. Fitness responses of Escherichia coli to changes in its thermal environment
-
Bennett, A.F., Lenski, R.E., and Mittler, J.E. (1992) Evolutionary adaptation to temperature. I. Fitness responses of Escherichia coli to changes in its thermal environment. Evolution 46: 16-30.
-
(1992)
Evolution
, vol.46
, pp. 16-30
-
-
Bennett, A.F.1
Lenski, R.E.2
Mittler, J.E.3
-
7
-
-
79951808135
-
Next-generation sequencing as a tool to study microbial evolution
-
Brockhurst, M.A., Colegrave, N., and Rozen, D.E. (2011) Next-generation sequencing as a tool to study microbial evolution. Mol Ecol 20: 972-980.
-
(2011)
Mol Ecol
, vol.20
, pp. 972-980
-
-
Brockhurst, M.A.1
Colegrave, N.2
Rozen, D.E.3
-
8
-
-
44849093465
-
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
-
Cho, B.K., Knight, E.M., Barrett, C.L., and Palsson, B. (2008) Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome res 18: 900-910.
-
(2008)
Genome res
, vol.18
, pp. 900-910
-
-
Cho, B.K.1
Knight, E.M.2
Barrett, C.L.3
Palsson, B.4
-
9
-
-
0037417962
-
Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli
-
Cooper, T.F., Rozen, D.E., and Lenski, R.E. (2003) Parallel changes in gene expression after 20, 000 generations of evolution in Escherichia coli. Proc Natl Acad Sci USA 100: 1072-1077.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1072-1077
-
-
Cooper, T.F.1
Rozen, D.E.2
Lenski, R.E.3
-
10
-
-
0025129999
-
Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli isregulated by oxygen, pH, and the fnr gene product
-
Cotter, P.A., Chepuri, V., Gennis, R.B., and Gunsalus, R.P. (1990) Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli isregulated by oxygen, pH, and the fnr gene product. J Bacteriol 172: 6333-6338.
-
(1990)
J Bacteriol
, vol.172
, pp. 6333-6338
-
-
Cotter, P.A.1
Chepuri, V.2
Gennis, R.B.3
Gunsalus, R.P.4
-
11
-
-
77955933105
-
Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli
-
Crozat, E., Winkworth, C., Gaffé, J., Hallin, P.F., Riley, M.A., Lenski, R.E., and Schneider, D. (2010) Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli. Mol Biol Evol 27: 2113-2128.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2113-2128
-
-
Crozat, E.1
Winkworth, C.2
Gaffé, J.3
Hallin, P.F.4
Riley, M.A.5
Lenski, R.E.6
Schneider, D.7
-
12
-
-
84860663163
-
Evolutionary insight from whole-genome sequencing of experimentally evolved microbes
-
Dettman, J.R., Rodrigue, N., Melnyk, A.H., Wong, A., Bailey, S.F., and Kassen, R. (2012) Evolutionary insight from whole-genome sequencing of experimentally evolved microbes. Mol Ecol 21: 2058-2077.
-
(2012)
Mol Ecol
, vol.21
, pp. 2058-2077
-
-
Dettman, J.R.1
Rodrigue, N.2
Melnyk, A.H.3
Wong, A.4
Bailey, S.F.5
Kassen, R.6
-
13
-
-
39249084651
-
RpoS regulation of gene expression during exponential growth of Escherichia coli K12
-
Dong, T., Kirchhof, M.G., and Schellhorn, H.E. (2008) RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol Genet Genomics 2008: 267-277.
-
(2008)
Mol Genet Genomics
, vol.2008
, pp. 267-277
-
-
Dong, T.1
Kirchhof, M.G.2
Schellhorn, H.E.3
-
14
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena, S.F., and Lenski, R.E. (2003) Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat Rev Genet 4: 457-469.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
15
-
-
25844495901
-
Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
-
Fong, S., Joyce, A.R., and Palsson, B. (2005) Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res 15: 1365-1372.
-
(2005)
Genome Res
, vol.15
, pp. 1365-1372
-
-
Fong, S.1
Joyce, A.R.2
Palsson, B.3
-
16
-
-
33646427470
-
IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli
-
Giel, J.L., Rodionov, D., Liu, M., Blattner, F.R., and Kiley, P.J. (2006) IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli. Mol Microbiol 60: 1058-1075.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1058-1075
-
-
Giel, J.L.1
Rodionov, D.2
Liu, M.3
Blattner, F.R.4
Kiley, P.J.5
-
17
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
Gresham, D., Desai, M., Tucker, C.M., Jenq, H.T., Pai, D.A., Ward, A., etal. (2008) The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet 4: e1000303.
-
(2008)
PLoS Genet
, vol.4
-
-
Gresham, D.1
Desai, M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
-
18
-
-
0032816696
-
Antigen-43-mediated autoaggregation of Escherichia coli is blocked by fimbriation
-
Hasman, H., Chakraborty, T., and Klemm, P. (1999) Antigen-43-mediated autoaggregation of Escherichia coli is blocked by fimbriation. J Bacteriol 181: 4834-4841.
-
(1999)
J Bacteriol
, vol.181
, pp. 4834-4841
-
-
Hasman, H.1
Chakraborty, T.2
Klemm, P.3
-
19
-
-
0033956362
-
Antigen 43 and type 1 fimbriae determine colony morphology of Escherichia coli K-12
-
Hasman, H., Schembri, M.A., and Klemm, P. (2000) Antigen 43 and type 1 fimbriae determine colony morphology of Escherichia coli K-12. J Bacteriol 182: 1089-1095.
-
(2000)
J Bacteriol
, vol.182
, pp. 1089-1095
-
-
Hasman, H.1
Schembri, M.A.2
Klemm, P.3
-
20
-
-
0023376305
-
Evolution of Escherichia coli during growth in a constant environment
-
Helling, R.B., Vargas, C.N., and Adams, J. (1987) Evolution of Escherichia coli during growth in a constant environment. Genetics 116: 349-358.
-
(1987)
Genetics
, vol.116
, pp. 349-358
-
-
Helling, R.B.1
Vargas, C.N.2
Adams, J.3
-
21
-
-
0030935922
-
Antigen 43, a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12
-
Henderson, I.R., Meehan, M., and Owen, P. (1997) Antigen 43, a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12. FEMS Microbiol Lett 149: 115-120.
-
(1997)
FEMS Microbiol Lett
, vol.149
, pp. 115-120
-
-
Henderson, I.R.1
Meehan, M.2
Owen, P.3
-
22
-
-
33751544539
-
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
-
Herring, C.D., Raghunathan, A., Honisch, C., Patel, T., Applebee, M.K., Joyce, A.R., etal. (2006) Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nat Genet 38: 1406-1412.
-
(2006)
Nat Genet
, vol.38
, pp. 1406-1412
-
-
Herring, C.D.1
Raghunathan, A.2
Honisch, C.3
Patel, T.4
Applebee, M.K.5
Joyce, A.R.6
-
23
-
-
84874535714
-
Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
-
Herron, M.D., and Doebeli, M. (2013) Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLoS Biol 11: e1001490.
-
(2013)
PLoS Biol
, vol.11
-
-
Herron, M.D.1
Doebeli, M.2
-
24
-
-
84859899271
-
New insights into bacterial adaptation through in vivo and in silico experimental evolution
-
Hindré, T., Knibbe, C., Beslon, G., and Schneider, D. (2012) New insights into bacterial adaptation through in vivo and in silico experimental evolution. Nat Rev Microbiol 10: 352-365.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 352-365
-
-
Hindré, T.1
Knibbe, C.2
Beslon, G.3
Schneider, D.4
-
25
-
-
34250848992
-
Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coli
-
Hughes, B.S., Cullum, A.J., and Bennett, A.F. (2007) Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coli. Evolution 61: 1725-1734.
-
(2007)
Evolution
, vol.61
, pp. 1725-1734
-
-
Hughes, B.S.1
Cullum, A.J.2
Bennett, A.F.3
-
26
-
-
58149193234
-
STRING 8 - a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L.J., Kuhn, M., Stark, M., Chaffron, S., Creevey, C., Muller, J., etal. (2009) STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37: D412-416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
-
27
-
-
0029842086
-
Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate
-
Kasimoglu, E., Park, S.J., Malek, J., Tseng, C.P., and Gunsalus, R.P. (1996) Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate. J Bacteriol 178: 5563-5567.
-
(1996)
J Bacteriol
, vol.178
, pp. 5563-5567
-
-
Kasimoglu, E.1
Park, S.J.2
Malek, J.3
Tseng, C.P.4
Gunsalus, R.P.5
-
28
-
-
0036218182
-
The experimental evolution of specialists, generalists, and the maintenance of diversity
-
Kassen, R. (2002) The experimental evolution of specialists, generalists, and the maintenance of diversity. J Evol Biol 15: 173-190.
-
(2002)
J Evol Biol
, vol.15
, pp. 173-190
-
-
Kassen, R.1
-
29
-
-
84865866440
-
Experimental evolution
-
Kawecki, T.J., Lenski, R.E., Ebert, D., Hollis, B., Olivieri, I., and Whitlock, M.C. (2012) Experimental evolution. Trends Ecol Evol 27: 547-560.
-
(2012)
Trends Ecol Evol
, vol.27
, pp. 547-560
-
-
Kawecki, T.J.1
Lenski, R.E.2
Ebert, D.3
Hollis, B.4
Olivieri, I.5
Whitlock, M.C.6
-
30
-
-
0036068104
-
Antigen 43-mediated autotransporter display, a versatile bacterial cell surface presentation system
-
Kjaergaard, K., Hasman, H., Schembri, M.A., and Klemm, P. (2002) Antigen 43-mediated autotransporter display, a versatile bacterial cell surface presentation system. J Bacteriol 184: 4197-4204.
-
(2002)
J Bacteriol
, vol.184
, pp. 4197-4204
-
-
Kjaergaard, K.1
Hasman, H.2
Schembri, M.A.3
Klemm, P.4
-
31
-
-
78349302644
-
The crystal structure Escherichia coli Spy
-
Kwon, E., Kim, D.Y., Gross, C.A., Gross, J.D., and Kim, K.K. (2010) The crystal structure Escherichia coli Spy. Protein Sci 19: 2252-2259.
-
(2010)
Protein Sci
, vol.19
, pp. 2252-2259
-
-
Kwon, E.1
Kim, D.Y.2
Gross, C.A.3
Gross, J.D.4
Kim, K.K.5
-
32
-
-
6044228192
-
S -dependent gene expression at the onset of stationary phase in Escherichia coli: function of S -dependent genes and identification of their promoter sequences
-
Lacour, S., and Landini, P. (2004) S -dependent gene expression at the onset of stationary phase in Escherichia coli: function of S -dependent genes and identification of their promoter sequences. J Bacteriol 186: 7186-7195.
-
(2004)
J Bacteriol
, vol.186
, pp. 7186-7195
-
-
Lacour, S.1
Landini, P.2
-
33
-
-
77954265373
-
Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a nonnative carbon source, L-1,2-propanediol
-
Lee, D.-H., and Palsson, B.Ø. (2010) Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a nonnative carbon source, L-1, 2-propanediol. Appl Environ Microbiol 76: 4158-4168.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4158-4168
-
-
Lee, D.-H.1
Palsson, B.2
-
34
-
-
0027801435
-
Evolutionary response of Escherichia coli to thermal stress
-
Lenski, R.E., and Bennett, A. (1993) Evolutionary response of Escherichia coli to thermal stress. Am Nat 142: 47-64.
-
(1993)
Am Nat
, vol.142
, pp. 47-64
-
-
Lenski, R.E.1
Bennett, A.2
-
35
-
-
0026279651
-
Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
-
Lenski, R.E., Rose, M.R., Simpson, S.C., and Tadler, S.C. (1991) Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2, 000 generations. Am Nat 138: 1315-1341.
-
(1991)
Am Nat
, vol.138
, pp. 1315-1341
-
-
Lenski, R.E.1
Rose, M.R.2
Simpson, S.C.3
Tadler, S.C.4
-
37
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., etal. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
38
-
-
19344368645
-
Functional evolution of a cis-regulatory module
-
Ludwig, M.Z., Palsson, A., Alekseeva, E., Bergman, C.M., Nathan, J., and Kreitman, M. (2005) Functional evolution of a cis-regulatory module. PLoS Biol 3: 588-598.
-
(2005)
PLoS Biol
, vol.3
, pp. 588-598
-
-
Ludwig, M.Z.1
Palsson, A.2
Alekseeva, E.3
Bergman, C.M.4
Nathan, J.5
Kreitman, M.6
-
39
-
-
0034612282
-
The SOS response regulates adaptive mutation
-
McKenzie, G.J., Harris, R.S., Lee, P.L., and Rosenberg, S.M. (2000) The SOS response regulates adaptive mutation. Proc Natl Acad Sci USA 97: 6646-6651.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6646-6651
-
-
McKenzie, G.J.1
Harris, R.S.2
Lee, P.L.3
Rosenberg, S.M.4
-
40
-
-
12944262160
-
Resource competition and adaptive radiation in a microbial microcosm
-
MacLean, C., Dickson, A., and Bell, G. (2005) Resource competition and adaptive radiation in a microbial microcosm. Ecol Lett 8: 38-46.
-
(2005)
Ecol Lett
, vol.8
, pp. 38-46
-
-
MacLean, C.1
Dickson, A.2
Bell, G.3
-
41
-
-
33746615552
-
Clonal adaptive radiation in a constant environment
-
Maharjan, R., Seeto, S., Notley-McRobb, L., and Ferenci, T. (2006) Clonal adaptive radiation in a constant environment. Science 113: 514-517.
-
(2006)
Science
, vol.113
, pp. 514-517
-
-
Maharjan, R.1
Seeto, S.2
Notley-McRobb, L.3
Ferenci, T.4
-
42
-
-
39649103644
-
Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals
-
Murarka, A., Dharmadi, Y., Yazdani, S.S., and Gonzalez, R. (2008) Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals. Appl Environ Microbiol 74: 1124-1135.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1124-1135
-
-
Murarka, A.1
Dharmadi, Y.2
Yazdani, S.S.3
Gonzalez, R.4
-
43
-
-
77951584625
-
The population genetics of beneficial mutations
-
Orr, H.A. (2010) The population genetics of beneficial mutations. Philos Trans R Soc Lond B Biol Sci 365: 1195-1201.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 1195-1201
-
-
Orr, H.A.1
-
44
-
-
37349107011
-
The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli
-
Ostrowski, E.A., Woods, R.J., and Lenski, R.E. (2008) The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli. Proc Biol Sci 275: 277-284.
-
(2008)
Proc Biol Sci
, vol.275
, pp. 277-284
-
-
Ostrowski, E.A.1
Woods, R.J.2
Lenski, R.E.3
-
45
-
-
80052031934
-
Systems-biology approaches for predicting genomic evolution
-
Papp, B., Notebaart, R.A., and Pál, C. (2011) Systems-biology approaches for predicting genomic evolution. Nat Rev Genet 12: 591-602.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 591-602
-
-
Papp, B.1
Notebaart, R.A.2
Pál, C.3
-
46
-
-
33646174628
-
Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component
-
Pepin, K.M., Samuel, M.A., and Wichman, H.A. (2006) Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component. Genetics 172: 2047-2056.
-
(2006)
Genetics
, vol.172
, pp. 2047-2056
-
-
Pepin, K.M.1
Samuel, M.A.2
Wichman, H.A.3
-
47
-
-
43149093576
-
Escherichia coli YqhD exhibits aldehyde reductase activity and protects from the harmful effect of lipid peroxidation-derived aldehydes
-
Pérez, J.M., Arenas, F.A., Pradenas, G.A., Sandoval, J.M., and Vásquez, C.C. (2008) Escherichia coli YqhD exhibits aldehyde reductase activity and protects from the harmful effect of lipid peroxidation-derived aldehydes. J Biol Chem 283: 7346-7353.
-
(2008)
J Biol Chem
, vol.283
, pp. 7346-7353
-
-
Pérez, J.M.1
Arenas, F.A.2
Pradenas, G.A.3
Sandoval, J.M.4
Vásquez, C.C.5
-
48
-
-
34548769341
-
Evolution of global regulatory networks during a long-term experiment with Escherichia coli
-
Philippe, N., Crozat, E., Lenski, R.E., and Schneider, D. (2007) Evolution of global regulatory networks during a long-term experiment with Escherichia coli. BioEssays 9: 846-860.
-
(2007)
BioEssays
, vol.9
, pp. 846-860
-
-
Philippe, N.1
Crozat, E.2
Lenski, R.E.3
Schneider, D.4
-
49
-
-
84873854693
-
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments
-
Puentes-Téllez, P.E., Hansen, M.A., Sørensen, S.J., and van Elsas, J.D. (2013) Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments. Appl Environ Microbiol 79: 1008-1017.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 1008-1017
-
-
Puentes-Téllez, P.E.1
Hansen, M.A.2
Sørensen, S.J.3
van Elsas, J.D.4
-
50
-
-
0034213941
-
The emergence and maintenance of diversity: insights from experimental bacterial populations
-
Rainey, P., Buckling, A., Kassen, R., and Travisano, M. (2000) The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends Ecol Evol 15: 243-247.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 243-247
-
-
Rainey, P.1
Buckling, A.2
Kassen, R.3
Travisano, M.4
-
51
-
-
0032474853
-
Adaptive radiation in a heterogeneous environment
-
Rainey, P.B., and Travisano, M. (1998) Adaptive radiation in a heterogeneous environment. Nature 32: 69-72.
-
(1998)
Nature
, vol.32
, pp. 69-72
-
-
Rainey, P.B.1
Travisano, M.2
-
52
-
-
0041625721
-
Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature
-
Riehle, M.M., Bennett, A.F., Lenski, R.E., and Long, A.D. (2003) Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. Physiol Genomics 14: 47-58.
-
(2003)
Physiol Genomics
, vol.14
, pp. 47-58
-
-
Riehle, M.M.1
Bennett, A.F.2
Lenski, R.E.3
Long, A.D.4
-
53
-
-
84863885448
-
Comparative studies of gene expression and the evolution of gene regulation
-
Romero, I.G., Rubinsky, I., and Gilad, Y. (2012) Comparative studies of gene expression and the evolution of gene regulation. Nat Rev Genet 13: 505-516.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 505-516
-
-
Romero, I.G.1
Rubinsky, I.2
Gilad, Y.3
-
54
-
-
0028094645
-
Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli
-
Rosenzweig, R.F., Sharp, R.R., Treves, D.S., and Adams, J. (1994) Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli. Genetics 137: 903-917.
-
(1994)
Genetics
, vol.137
, pp. 903-917
-
-
Rosenzweig, R.F.1
Sharp, R.R.2
Treves, D.S.3
Adams, J.4
-
55
-
-
0043032584
-
Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR
-
Salmon, K., Hung, S.P., Mekjian, K., Baldi, P., Hatfield, G.W., and Gunsalus, R.P. (2003) Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. J Biol Chem 278: 29837-29855.
-
(2003)
J Biol Chem
, vol.278
, pp. 29837-29855
-
-
Salmon, K.1
Hung, S.P.2
Mekjian, K.3
Baldi, P.4
Hatfield, G.W.5
Gunsalus, R.P.6
-
56
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen, T.D., and Livak, K.J. (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3: 1101-1108.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
57
-
-
79957788648
-
Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources
-
Shimada, T., Fujita, N., Yamamoto, K., and Ishihama, A. (2011) Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PLoS ONE 6: 1-11.
-
(2011)
PLoS ONE
, vol.6
, pp. 1-11
-
-
Shimada, T.1
Fujita, N.2
Yamamoto, K.3
Ishihama, A.4
-
58
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article 3.
-
Smyth, G.K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: 1-25 Article 3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 1-25
-
-
Smyth, G.K.1
-
59
-
-
84856258903
-
The molecular diversity of adaptive convergence
-
Tenaillon, O., Rodríguez-Verdugo, A., Gaut, R.L., McDonald, P., Bennett, A.F., Long, A.D., etal. (2012) The molecular diversity of adaptive convergence. Science 335: 457-461.
-
(2012)
Science
, vol.335
, pp. 457-461
-
-
Tenaillon, O.1
Rodríguez-Verdugo, A.2
Gaut, R.L.3
McDonald, P.4
Bennett, A.F.5
Long, A.D.6
-
61
-
-
33744482546
-
Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor
-
Velicer, G.J., Raddatz, G., Keller, H., Deiss, S., Lanz, C., Dinkelacker, I., and Schuster, S.C. (2006) Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proc Natl Acad Sci USA 103: 8107-8112.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8107-8112
-
-
Velicer, G.J.1
Raddatz, G.2
Keller, H.3
Deiss, S.4
Lanz, C.5
Dinkelacker, I.6
Schuster, S.C.7
-
62
-
-
80052643394
-
Chromosome organization by a nucleoid-associated protein in live bacteria
-
Wang, W., Li, G.W., Chen, C., Xie, X.S., and Zhuang, X. (2012) Chromosome organization by a nucleoid-associated protein in live bacteria. Science 333: 1445-1449.
-
(2012)
Science
, vol.333
, pp. 1445-1449
-
-
Wang, W.1
Li, G.W.2
Chen, C.3
Xie, X.S.4
Zhuang, X.5
-
63
-
-
14244256556
-
Genome-wide analysis of the general stress response network in Escherichia coli: δs-dependent genes, promoters, and sigma factor selectivity
-
Weber, H., Polem, T., Heuvelin, J., Wendisch, V., and Hengge, R. (2005) Genome-wide analysis of the general stress response network in Escherichia coli: δs-dependent genes, promoters, and sigma factor selectivity. J Bacteriol 187: 1591-1603.
-
(2005)
J Bacteriol
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polem, T.2
Heuvelin, J.3
Wendisch, V.4
Hengge, R.5
-
64
-
-
84866893020
-
Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa
-
Wong, A., Rodrigue, N., and Kassen, R. (2012) Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa. PLoS Genet 8: e1002928.
-
(2012)
PLoS Genet
, vol.8
-
-
Wong, A.1
Rodrigue, N.2
Kassen, R.3
-
65
-
-
33745166593
-
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
-
Woods, R., Schneider, D., Winkworth, C.L., Riley, M.A., and Lenski, R.E. (2006) Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proc Natl Acad Sci USA 103: 9107-9112.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 9107-9112
-
-
Woods, R.1
Schneider, D.2
Winkworth, C.L.3
Riley, M.A.4
Lenski, R.E.5
-
66
-
-
0347622754
-
pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12
-
Yohannes, E., Barnhart, D.M., and Slonczewski, J.L. (2004) pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12. J Bacteriol 186: 192-199.
-
(2004)
J Bacteriol
, vol.186
, pp. 192-199
-
-
Yohannes, E.1
Barnhart, D.M.2
Slonczewski, J.L.3
-
67
-
-
0033028251
-
OmpF changes and the complexity of Escherichia coli adaptation to prolonged lactose limitation
-
Zhang, E., and Ferenci, T. (1999) OmpF changes and the complexity of Escherichia coli adaptation to prolonged lactose limitation. FEMS Microbiol Lett 176: 395-401.
-
(1999)
FEMS Microbiol Lett
, vol.176
, pp. 395-401
-
-
Zhang, E.1
Ferenci, T.2
|