메뉴 건너뛰기




Volumn 186, Issue 21, 2004, Pages 7186-7195

σS-dependent gene expression at the onset of stationary phase in Escherichia coli: Function of σS-dependent genes and identification of their promoter sequences

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CYTOSINE; FRUCTOSE; INDOLE; INITIATION FACTOR 1; IRON; N ACETYLGLUCOSAMINE; RNA POLYMERASE; SIGMA FACTOR; SUGAR; TRYPTOPHANASE; BACTERIAL PROTEIN; ESCHERICHIA COLI PROTEIN; SIGMA FACTOR KATF PROTEIN, BACTERIA;

EID: 6044228192     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.21.7186-7195.2004     Document Type: Article
Times cited : (234)

References (102)
  • 2
    • 0032851954 scopus 로고    scopus 로고
    • Impact of rpoS deletion on Escherichia coli biofilms
    • Adams, J. L., and R. J. McLean. 1999. Impact of rpoS deletion on Escherichia coli biofilms. Appl. Environ. Microbiol. 65:4285-4287.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4285-4287
    • Adams, J.L.1    McLean, R.J.2
  • 4
    • 0027405142 scopus 로고
    • Overproduction, purification and characterization of the bacterioferritin of Escherichia coli and a C-terminally extended variant
    • Andrews, S. C., J. M. Smith, C. Hawkins, J. M. Williams, P. M. Harrison, and J. R. Guest. 1993. Overproduction, purification and characterization of the bacterioferritin of Escherichia coli and a C-terminally extended variant. Eur. J. Biochem. 213:329-338.
    • (1993) Eur. J. Biochem. , vol.213 , pp. 329-338
    • Andrews, S.C.1    Smith, J.M.2    Hawkins, C.3    Williams, J.M.4    Harrison, P.M.5    Guest, J.R.6
  • 5
    • 0024365521 scopus 로고
    • The Escherichia coli enterobactin biosynthesis gene, entD: Nucleotide sequence and membrane localization of its protein product
    • Armstrong, S. K., G. S. Pettis, L. J. Forrester, and M. A. McIntosh. 1989. The Escherichia coli enterobactin biosynthesis gene, entD: nucleotide sequence and membrane localization of its protein product. Mol. Microbiol. 3:757-766.
    • (1989) Mol. Microbiol. , vol.3 , pp. 757-766
    • Armstrong, S.K.1    Pettis, G.S.2    Forrester, L.J.3    McIntosh, M.A.4
  • 6
    • 0028170344 scopus 로고
    • 70 in the absence of the nucleoid-associated protein H-NS
    • 70 in the absence of the nucleoid-associated protein H-NS. Mol. Microbiol. 13:1021-1032.
    • (1994) Mol. Microbiol. , vol.13 , pp. 1021-1032
    • Arnqvist, A.1    Olsen, A.2    Normark, S.3
  • 7
    • 0035920119 scopus 로고    scopus 로고
    • Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media
    • Avisen, M. B., R. E. Horton, T. R. Walsh, and P. M. Bennett. 2001. Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media. J. Biol. Chem. 276:26955-26961.
    • (2001) J. Biol. Chem. , vol.276 , pp. 26955-26961
    • Avisen, M.B.1    Horton, R.E.2    Walsh, T.R.3    Bennett, P.M.4
  • 10
    • 0041530033 scopus 로고    scopus 로고
    • Genomic profiling of iron-responsive genes in Salmonella enterica serovar Typhimurium by high-throughput screening of a random promoter library
    • Bjarnason, J., C. M. Southward, and M. G. Surette. 2003. Genomic profiling of iron-responsive genes in Salmonella enterica serovar Typhimurium by high-throughput screening of a random promoter library. J. Bacteriol. 185:4973-4982.
    • (2003) J. Bacteriol. , vol.185 , pp. 4973-4982
    • Bjarnason, J.1    Southward, C.M.2    Surette, M.G.3
  • 11
    • 0036460698 scopus 로고    scopus 로고
    • Transient repressor effect of Fis on the growth phase-regulated osmE promoter of Escherichia coli K12
    • Bordes, P., J. Bouvier, A. Conter, A. Kolb, and C. Gutierrez. 2002. Transient repressor effect of Fis on the growth phase-regulated osmE promoter of Escherichia coli K12. Mol. Genet. Genomics 268:206-213.
    • (2002) Mol. Genet. Genomics. , vol.268 , pp. 206-213
    • Bordes, P.1    Bouvier, J.2    Conter, A.3    Kolb, A.4    Gutierrez, C.5
  • 12
    • 0033975447 scopus 로고    scopus 로고
    • 70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter
    • 70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter. Mol. Microbiol. 35:845-853.
    • (2000) Mol. Microbiol. , vol.35 , pp. 845-853
    • Bordes, P.1    Repoila, F.2    Kolb, A.3    Gutierrez, C.4
  • 13
    • 0031863419 scopus 로고    scopus 로고
    • Interplay between global regulators of Escherichia coli: Effect of RpoS, Lrp and H-NS on transcription of the gene osmC
    • Bouvier, J., S. Gordia, G. Kampmann, R. Lange, R. Hengge-Aronis, and C. Gutierrez. 1998. Interplay between global regulators of Escherichia coli: effect of RpoS, Lrp and H-NS on transcription of the gene osmC. Mol. Microbiol. 28:971-980.
    • (1998) Mol. Microbiol. , vol.28 , pp. 971-980
    • Bouvier, J.1    Gordia, S.2    Kampmann, G.3    Lange, R.4    Hengge-Aronis, R.5    Gutierrez, C.6
  • 14
    • 0034192263 scopus 로고    scopus 로고
    • DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
    • Burr, T., J. Mitchell, A. Kolb, S. Minchin, and S. Busby. 2000. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res. 28:1864-1870.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1864-1870
    • Burr, T.1    Mitchell, J.2    Kolb, A.3    Minchin, S.4    Busby, S.5
  • 16
    • 0037316190 scopus 로고    scopus 로고
    • A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli
    • Cheung, K. J., V. Badarinarayana, D. W. Selinger, D. Janse, and G. M. Church. 2003. A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli. Genome Res. 13:206-215.
    • (2003) Genome Res. , vol.13 , pp. 206-215
    • Cheung, K.J.1    Badarinarayana, V.2    Selinger, D.W.3    Janse, D.4    Church, G.M.5
  • 17
    • 0031576351 scopus 로고    scopus 로고
    • Role of DNA supercoiling and RpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12
    • Conter, A., C. Menchon, and C. Gutierrez. 1997. Role of DNA supercoiling and RpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12. J. Mol. Biol. 273:75-83.
    • (1997) J. Mol. Biol. , vol.273 , pp. 75-83
    • Conter, A.1    Menchon, C.2    Gutierrez, C.3
  • 18
    • 0028121106 scopus 로고
    • Translation initiation factor IF1 is essential for cell viability in Escherichia coli
    • Cummings, H. S., and J. W. Hershey. 1994. Translation initiation factor IF1 is essential for cell viability in Escherichia coli. J. Bacteriol. 176:198-205.
    • (1994) J. Bacteriol. , vol.176 , pp. 198-205
    • Cummings, H.S.1    Hershey, J.W.2
  • 19
    • 0020964799 scopus 로고
    • Molecular cloning of the gene for phosphofructokinase-2 of Escherichia coli and the nature of a mutation, pfkB1, causing a high level of the enzyme
    • Daldal, F. 1983. Molecular cloning of the gene for phosphofructokinase-2 of Escherichia coli and the nature of a mutation, pfkB1, causing a high level of the enzyme. J. Mol. Biol. 168:285-305.
    • (1983) J. Mol. Biol. , vol.168 , pp. 285-305
    • Daldal, F.1
  • 20
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 21
    • 0033037702 scopus 로고    scopus 로고
    • The response to stationary-phase stress conditions in Escherichia coli: Role and regulation of the glutamic acid decarboxylase system
    • De Biase, D., A. Tramonti, F. Bossa, and P. Visca. 1999. The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol. Microbiol. 32:1198-1211.
    • (1999) Mol. Microbiol. , vol.32 , pp. 1198-1211
    • De Biase, D.1    Tramonti, A.2    Bossa, F.3    Visca, P.4
  • 25
    • 0029934688 scopus 로고    scopus 로고
    • A [2Fe-2S] protein encoded by an open reading frame upstream of the Escherichia coli bacterioferritin gene
    • Garg, R. P., C. J. Vargo, X. Cui, and D. M. Kurtz, Jr. 1996. A [2Fe-2S] protein encoded by an open reading frame upstream of the Escherichia coli bacterioferritin gene. Biochemistry 35:6297-6301.
    • (1996) Biochemistry , vol.35 , pp. 6297-6301
    • Garg, R.P.1    Vargo, C.J.2    Cui, X.3    Kurtz Jr., D.M.4
  • 27
    • 0032934815 scopus 로고    scopus 로고
    • The regulation and role of the periplasmic copper, zinc Superoxide dismutase of Escherichia coli
    • Gort, A. S., D. M. Ferber, and J. A. Imlay. 1999. The regulation and role of the periplasmic copper, zinc Superoxide dismutase of Escherichia coli. Mol. Microbiol. 32:179-191.
    • (1999) Mol. Microbiol. , vol.32 , pp. 179-191
    • Gort, A.S.1    Ferber, D.M.2    Imlay, J.A.3
  • 28
    • 0031959912 scopus 로고    scopus 로고
    • The crystal structure of Dps, a ferritin homolog that binds and protects DNA
    • Grant, R. A., D. J. Filman, S. E. Finkel, R. Kolter, and J. M. Hogle. 1998. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5:294-303.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 294-303
    • Grant, R.A.1    Filman, D.J.2    Finkel, S.E.3    Kolter, R.4    Hogle, J.M.5
  • 29
    • 0027522074 scopus 로고
    • Isolation and characterization of Bacillus subtilis genes involved in siderophore biosynthesis: Relationship between B. sublilis sfpo and Escherichia coli entD genes
    • Grossman, T. H., M. Tuckman, S. Ellestad, and M. S. Osburne. 1993. Isolation and characterization of Bacillus subtilis genes involved in siderophore biosynthesis: relationship between B. sublilis sfpo and Escherichia coli entD genes. J. Bacteriol. 175:6203-6211.
    • (1993) J. Bacteriol. , vol.175 , pp. 6203-6211
    • Grossman, T.H.1    Tuckman, M.2    Ellestad, S.3    Osburne, M.S.4
  • 30
    • 0141727625 scopus 로고    scopus 로고
    • Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli
    • Hagiwara, D., M. Sugiura, T. Oshima, H. Mon, H. Aiba, T. Yamashino, and T. Mizuno. 2003. Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli. J. Bacteriol. 185:5735-5746.
    • (2003) J. Bacteriol. , vol.185 , pp. 5735-5746
    • Hagiwara, D.1    Sugiura, M.2    Oshima, T.3    Mon, H.4    Aiba, H.5    Yamashino, T.6    Mizuno, T.7
  • 31
    • 0842326209 scopus 로고    scopus 로고
    • The ferritin-like Dps protein is required for Salmonella enterica serovar Typhimurium oxidative stress resistance and virulence
    • Halsey, T. A., A. Vazquez-Torres, D. J. Gravdahl, F. C. Fang, and S. J. Libby. 2004. The ferritin-like Dps protein is required for Salmonella enterica serovar Typhimurium oxidative stress resistance and virulence. Infect. Immun. 72:1155-1158.
    • (2004) Infect. Immun. , vol.72 , pp. 1155-1158
    • Halsey, T.A.1    Vazquez-Torres, A.2    Gravdahl, D.J.3    Fang, F.C.4    Libby, S.J.5
  • 32
    • 0029843811 scopus 로고    scopus 로고
    • S as a global regulator in the osmotic control of gene expression in Escherichia coli
    • S as a global regulator in the osmotic control of gene expression in Escherichia coli. Mol. Microbiol. 21:887-893.
    • (1996) Mol. Microbiol. , vol.21 , pp. 887-893
    • Hengge-Aronis, R.1
  • 33
    • 0000291637 scopus 로고    scopus 로고
    • The general stress response in E. coli
    • G. Storz and R. Hengge-Aronis (ed.). ASM Press, Washington, D.C.
    • Hengge-Aronis, R. 2000. The general stress response in E. coli, p. 161-178. In G. Storz and R. Hengge-Aronis (ed.), Bacterial stress responses. ASM Press, Washington, D.C.
    • (2000) Bacterial Stress Responses , pp. 161-178
    • Hengge-Aronis, R.1
  • 34
    • 0033118825 scopus 로고    scopus 로고
    • Interplay of global regulators and cell physiology in the general stress response of Escherichia coli
    • Hengge-Aronis, R. 1999. Interplay of global regulators and cell physiology in the general stress response of Escherichia coli. Curr. Opin. Microbiol. 2:148-152.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 148-152
    • Hengge-Aronis, R.1
  • 35
    • 0036198628 scopus 로고    scopus 로고
    • Recent insights into the general stress response regulatory network in Escherichia coil
    • Hengge-Aronis, R. 2002. Recent insights into the general stress response regulatory network in Escherichia coil. J. Mol. Microbiol. Biotechnol. 4:341-346.
    • (2002) J. Mol. Microbiol. Biotechnol. , vol.4 , pp. 341-346
    • Hengge-Aronis, R.1
  • 36
    • 0036714331 scopus 로고    scopus 로고
    • S (RpoS) subunit of RNA polymerase
    • table of contents
    • S (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66:373-395, table of contents.
    • (2002) Microbiol. Mol. Biol. Rev. , vol.66 , pp. 373-395
    • Hengge-Aronis, R.1
  • 38
    • 0035171017 scopus 로고    scopus 로고
    • PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites
    • Hershberg, R., G. Bejerano, A, Santos-Zavaleta, and H. Margalit. 2001. PromEC: an updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites. Nucleic Acids Res. 29:277.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 277
    • Hershberg, R.1    Bejerano, G.2    Santos-Zavaleta, A.3    Margalit, H.4
  • 39
    • 0037174983 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein
    • Hung, S. P., P. Baldi, and G. W. Hatfield. 2002. Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein. J. Biol. Chem. 277:40309-40323.
    • (2002) J. Biol. Chem. , vol.277 , pp. 40309-40323
    • Hung, S.P.1    Baldi, P.2    Hatfield, G.W.3
  • 41
    • 0033765113 scopus 로고    scopus 로고
    • Functional modulation of Escherichia coli RNA polymerase
    • Ishihama, A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54:499-518.
    • (2000) Annu. Rev. Microbiol. , vol.54 , pp. 499-518
    • Ishihama, A.1
  • 42
    • 0035053696 scopus 로고    scopus 로고
    • Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase
    • Izutsu, K., C. Wada, Y. Komine, T. Sako, C. Ueguchi, S. Nakura, and A. Wada. 2001. Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase. J. Bacteriol. 183:2765-2773.
    • (2001) J. Bacteriol. , vol.183 , pp. 2765-2773
    • Izutsu, K.1    Wada, C.2    Komine, Y.3    Sako, T.4    Ueguchi, C.5    Nakura, S.6    Wada, A.7
  • 43
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of sigma factor competition by the alarmone ppGpp
    • Jishage, M., K. Kvint, V. Shingler, and T. Nystrom. 2002. Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev. 16:1260-1270.
    • (2002) Genes Dev. , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nystrom, T.4
  • 44
    • 0036224939 scopus 로고    scopus 로고
    • Over 1000 genes are involved in the DNA damage response of Escherichia coli
    • Khil, P. P., and R. D. Camerini-Otero. 2002. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44:89-105.
    • (2002) Mol. Microbiol. , vol.44 , pp. 89-105
    • Khil, P.P.1    Camerini-Otero, R.D.2
  • 49
    • 0028063267 scopus 로고
    • Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB
    • Landini, P., L. I. Hajec, and M. R. Volkert. 1994. Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB. J. Bacteriol. 176:6583-6589.
    • (1994) J. Bacteriol. , vol.176 , pp. 6583-6589
    • Landini, P.1    Hajec, L.I.2    Volkert, M.R.3
  • 50
    • 0027331366 scopus 로고
    • S-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli
    • S-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli. J. Bacteriol. 175:7910-7917.
    • (1993) J. Bacteriol. , vol.175 , pp. 7910-7917
    • Lange, R.1    Barth, M.2    Hengge-Aronis, R.3
  • 53
    • 1942534676 scopus 로고    scopus 로고
    • Osmo-regulation of bacterial transcription via poised RNA polymerase
    • Lee, S. J., and J. D. Gralla. 2004. Osmo-regulation of bacterial transcription via poised RNA polymerase. Mol. Cell 14:153-162.
    • (2004) Mol. Cell. , vol.14 , pp. 153-162
    • Lee, S.J.1    Gralla, J.D.2
  • 54
    • 0035839452 scopus 로고    scopus 로고
    • 38 (RpoS)-RNA polymerase promoter engagement via -10 region nucleotides
    • 38 (RpoS)-RNA polymerase promoter engagement via -10 region nucleotides. J. Biol. Chem. 276:30064-30071.
    • (2001) J. Biol. Chem. , vol.276 , pp. 30064-30071
    • Lee, S.J.1    Gralla, J.D.2
  • 55
    • 0027230594 scopus 로고
    • Compilation of E. coli mRNA promoter sequences
    • Lisser, S., and H. Margalit. 1993. Compilation of E. coli mRNA promoter sequences. Nucleic Acids Res. 21:1507-1516.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1507-1516
    • Lisser, S.1    Margalit, H.2
  • 57
    • 0026612797 scopus 로고
    • 70 family: Sequence conservation and evolutionary relationships
    • 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174:3843-3849.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 58
    • 0034666279 scopus 로고    scopus 로고
    • Competition among seven Escherichia coli sigma subunits: Relative binding affinities to the core RNA polymerase
    • Maeda, H., N. Fujita, and A. Ishihama. 2000. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. Nucleic Acids Res. 28:3497-3503.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3497-3503
    • Maeda, H.1    Fujita, N.2    Ishihama, A.3
  • 60
    • 0030811135 scopus 로고    scopus 로고
    • Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps
    • Martinez, A., and R. Kolter. 1997. Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps. J. Bacteriol. 179:5188-5194.
    • (1997) J. Bacteriol. , vol.179 , pp. 5188-5194
    • Martinez, A.1    Kolter, R.2
  • 61
    • 0034940439 scopus 로고    scopus 로고
    • Further studies on RpoS in enterobacteria: Identification of rpoS in Enterobacter cloacae and Kluyvera cryocrescens
    • Martinez-Garcia, E., A. Tormo, and J. M. Navarro-Llorens. 2001. Further studies on RpoS in enterobacteria: identification of rpoS in Enterobacter cloacae and Kluyvera cryocrescens. Arch. Microbiol. 175:395-404.
    • (2001) Arch. Microbiol. , vol.175 , pp. 395-404
    • Martinez-Garcia, E.1    Tormo, A.2    Navarro-Llorens, J.M.3
  • 62
    • 0242552360 scopus 로고    scopus 로고
    • Indole can act as an extracellular signal to regulate biofilm formation of Escherichia coli and other indole-producing bacteria
    • Martine, P. D., R. Fursy, L. Bret, B. Sundararaju, and R. S. Phillips. 2003. Indole can act as an extracellular signal to regulate biofilm formation of Escherichia coli and other indole-producing bacteria. Can. J. Microbiol. 49:443-449.
    • (2003) Can. J. Microbiol. , vol.49 , pp. 443-449
    • Martine, P.D.1    Fursy, R.2    Bret, L.3    Sundararaju, B.4    Phillips, R.S.5
  • 63
    • 0141860088 scopus 로고    scopus 로고
    • Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
    • Masse, E., F. E. Escorcia, and S. Gottesman. 2003. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev. 17:2374-2383.
    • (2003) Genes Dev. , vol.17 , pp. 2374-2383
    • Masse, E.1    Escorcia, F.E.2    Gottesman, S.3
  • 64
    • 0038349356 scopus 로고    scopus 로고
    • Regulatory network of acid resistance genes in Escherichia coli
    • Masuda, N., and G. M. Church. 2003. Regulatory network of acid resistance genes in Escherichia coli. Mol. Microbiol. 48:699-712.
    • (2003) Mol. Microbiol. , vol.48 , pp. 699-712
    • Masuda, N.1    Church, G.M.2
  • 65
    • 0027224061 scopus 로고
    • Colibri: A functional database for the Escherichia coli genome
    • Medigue, C., A. Viari, A. Henaut, and A. Danchin. 1993. Colibri: a functional database for the Escherichia coli genome. Microbiol. Rev. 57:623-654.
    • (1993) Microbiol. Rev. , vol.57 , pp. 623-654
    • Medigue, C.1    Viari, A.2    Henaut, A.3    Danchin, A.4
  • 66
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 67
    • 0141605202 scopus 로고    scopus 로고
    • Identification and analysis of 'extended -10' promoters in Escherichia coli
    • Mitchell, J. E., D. Zheng, S. J. Busby, and S. D. Minchin. 2003. Identification and analysis of 'extended -10' promoters in Escherichia coli. Nucleic Acids Res. 31:4689-4695.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4689-4695
    • Mitchell, J.E.1    Zheng, D.2    Busby, S.J.3    Minchin, S.D.4
  • 68
    • 0037159977 scopus 로고    scopus 로고
    • Cloning and characterization of Edwardsiella ictaluri proteins expressed and recognized by the channel catfish Ictalurus punctatus immune response during infection
    • Moore, M. M., D. L. Fernandez, and R. L. Thune. 2002. Cloning and characterization of Edwardsiella ictaluri proteins expressed and recognized by the channel catfish Ictalurus punctatus immune response during infection. Dis. Aquat. Organ. 52:93-107.
    • (2002) Dis. Aquat. Organ. , vol.52 , pp. 93-107
    • Moore, M.M.1    Fernandez, D.L.2    Thune, R.L.3
  • 69
    • 0024841943 scopus 로고
    • Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor
    • Mulvey, M. R., and P. C. Loewen. 1989. Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor. Nucleic Acids Res. 17:9979-9991.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9979-9991
    • Mulvey, M.R.1    Loewen, P.C.2
  • 70
    • 0037385854 scopus 로고    scopus 로고
    • Conditional senescence in bacteria: Death of the immortals
    • Nystrom, T. 2003. Conditional senescence in bacteria: death of the immortals. Mol. Microbiol. 48:17-23.
    • (2003) Mol. Microbiol. , vol.48 , pp. 17-23
    • Nystrom, T.1
  • 71
    • 0030678622 scopus 로고    scopus 로고
    • Indigo formation by microorganisms expressing styrene monooxygenase activity
    • O'Connor, K. E., A. D. Dobson, and S. Hartmans. 1997. Indigo formation by microorganisms expressing styrene monooxygenase activity. Appl. Environ. Microbiol. 63:4287-4291.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4287-4291
    • O'Connor, K.E.1    Dobson, A.D.2    Hartmans, S.3
  • 73
    • 0027475041 scopus 로고
    • The RpoS sigma factor relieves H-NS-mediated transcriptional repression of csgA, the subunit gene of fibronectin-binding curli in Escherichia coli
    • Olsen, A., A. Arnqvist, M. Hammar, S. Sukupolvi, and S. Normark. 1993. The RpoS sigma factor relieves H-NS-mediated transcriptional repression of csgA, the subunit gene of fibronectin-binding curli in Escherichia coli. Mol. Microbiol. 7:523-536.
    • (1993) Mol. Microbiol. , vol.7 , pp. 523-536
    • Olsen, A.1    Arnqvist, A.2    Hammar, M.3    Sukupolvi, S.4    Normark, S.5
  • 75
    • 0036889070 scopus 로고    scopus 로고
    • DNA microarray analysis of the expression profile of Escherichia coli in response to treatment with 4.5-dihydroxy-2-cyclopenten-1-one
    • Phadtare, S., I. Kato, and M. Inouye. 2002. DNA microarray analysis of the expression profile of Escherichia coli in response to treatment with 4.5-dihydroxy-2-cyclopenten-1-one. J. Bacteriol. 184:6725-6729.
    • (2002) J. Bacteriol. , vol.184 , pp. 6725-6729
    • Phadtare, S.1    Kato, I.2    Inouye, M.3
  • 76
    • 0034977251 scopus 로고    scopus 로고
    • Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
    • Pomposiello, P. J., M. H. Bennik, and B. Demple. 2001. Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate. J. Bacteriol. 183:3890-3902.
    • (2001) J. Bacteriol. , vol.183 , pp. 3890-3902
    • Pomposiello, P.J.1    Bennik, M.H.2    Demple, B.3
  • 77
    • 0018474063 scopus 로고
    • Structure-function relationships in Escherichia coli initiation factors. II. Elucidation of the primary structure of initiation factor IF-1
    • Pon, C. L., B. Wittmann-Liebold, and C. Gualerzi. 1979. Structure-function relationships in Escherichia coli initiation factors. II. Elucidation of the primary structure of initiation factor IF-1. FEES Lett. 101:157-160.
    • (1979) FEES Lett. , vol.101 , pp. 157-160
    • Pon, C.L.1    Wittmann-Liebold, B.2    Gualerzi, C.3
  • 78
    • 0035205423 scopus 로고    scopus 로고
    • Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csgD gene
    • Prigent-Combaret, C., E. Brombacher, O. Vidal, A. Ambert, P. Lejeune, P. Landini, and C. Dorel. 2001. Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csgD gene. J. Bacteriol. 183:7213-7223.
    • (2001) J. Bacteriol. , vol.183 , pp. 7213-7223
    • Prigent-Combaret, C.1    Brombacher, E.2    Vidal, O.3    Ambert, A.4    Lejeune, P.5    Landini, P.6    Dorel, C.7
  • 79
    • 0032870733 scopus 로고    scopus 로고
    • Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli
    • Prigent-Combaret, C., O. Vidal, C. Dorel, and P. Lejeune. 1999. Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli. J. Bacteriol. 181:5993-6002.
    • (1999) J. Bacteriol. , vol.181 , pp. 5993-6002
    • Prigent-Combaret, C.1    Vidal, O.2    Dorel, C.3    Lejeune, P.4
  • 81
    • 4644277087 scopus 로고    scopus 로고
    • Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli
    • Ren, D., L. A. Bedzyk, R. W. Ye, S. M. Thomas, and T. K. Wood. 2004. Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli. Appl. Environ. Microbiol. 70:2038-2043.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2038-2043
    • Ren, D.1    Bedzyk, L.A.2    Ye, R.W.3    Thomas, S.M.4    Wood, T.K.5
  • 82
    • 0027761839 scopus 로고
    • A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
    • Ross, W., K. K. Gosink, J. Salomon, K. Igarashi, C. Zou, A. Ishihama, K. Severinov, and R. L. Course. 1993. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science 262:1407-1413.
    • (1993) Science , vol.262 , pp. 1407-1413
    • Ross, W.1    Gosink, K.K.2    Salomon, J.3    Igarashi, K.4    Zou, C.5    Ishihama, A.6    Severinov, K.7    Course, R.L.8
  • 83
    • 0024603522 scopus 로고
    • Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product
    • Sak, B. D., A. Eisenstark, and D. Touati. 1989. Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc. Natl. Acad. Sci. USA 86:3271-3275.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 3271-3275
    • Sak, B.D.1    Eisenstark, A.2    Touati, D.3
  • 85
    • 0031756183 scopus 로고    scopus 로고
    • Identification of conserved, RpoS-dependent stationary-phase genes of Escherichia coli
    • Schellhorn, H. E., J. P. Audia, L. I. Wei, and L. Chang. 1998. Identification of conserved, RpoS-dependent stationary-phase genes of Escherichia coli. J. Bacteriol. 180:6283-6291.
    • (1998) J. Bacteriol. , vol.180 , pp. 6283-6291
    • Schellhorn, H.E.1    Audia, J.P.2    Wei, L.I.3    Chang, L.4
  • 86
    • 0037384574 scopus 로고    scopus 로고
    • Global gene expression in Escherichia coli biofilms
    • Schembri, M. A., K. Kjaergaard, and P. Klemm. 2003. Global gene expression in Escherichia coli biofilms. Mol. Microbiol. 48:253-267.
    • (2003) Mol. Microbiol. , vol.48 , pp. 253-267
    • Schembri, M.A.1    Kjaergaard, K.2    Klemm, P.3
  • 90
    • 0029810398 scopus 로고    scopus 로고
    • Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
    • Taverna, P., and B. Sedgwick. 1996. Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli. J. Bacteriol. 178:5105-5111.
    • (1996) J. Bacteriol. , vol.178 , pp. 5105-5111
    • Taverna, P.1    Sedgwick, B.2
  • 91
    • 0022587477 scopus 로고
    • Pleiotropic mutations in appR reduce pH 2.5 acid phosphatase expression and restore succinate utilisation in CRP-deficient strains oi Escherichia coli
    • Touati, E., E. Dassa, and P. L. Boquet. 1986. Pleiotropic mutations in appR reduce pH 2.5 acid phosphatase expression and restore succinate utilisation in CRP-deficient strains oi Escherichia coli. Mol. Gen. Genet. 202:257-264.
    • (1986) Mol. Gen. Genet. , vol.202 , pp. 257-264
    • Touati, E.1    Dassa, E.2    Boquet, P.L.3
  • 92
    • 0035150147 scopus 로고    scopus 로고
    • Negative control of rpoS expression by phosphoenolpyruvate: Carbohydrate phosphotransferase system in Escherichia coli
    • Ueguchi, C., N. Misonou, and T. Mizuno. 2001. Negative control of rpoS expression by phosphoenolpyruvate: carbohydrate phosphotransferase system in Escherichia coli. J. Bacteriol. 183:520-527.
    • (2001) J. Bacteriol. , vol.183 , pp. 520-527
    • Ueguchi, C.1    Misonou, N.2    Mizuno, T.3
  • 93
    • 0027938938 scopus 로고
    • Induction of the Escherichia coli aidB gene under oxygen-limiting conditions requires a functional rpoS (katF) gene
    • Volkert, M. R., L. I. Hajec, Z. Matijasevic, F. C. Fang, and R. Prince. 1994. Induction of the Escherichia coli aidB gene under oxygen-limiting conditions requires a functional rpoS (katF) gene. J. Bacteriol. 176:7638-7645.
    • (1994) J. Bacteriol. , vol.176 , pp. 7638-7645
    • Volkert, M.R.1    Hajec, L.I.2    Matijasevic, Z.3    Fang, F.C.4    Prince, R.5
  • 94
    • 0031925720 scopus 로고    scopus 로고
    • Growth phase coupled modulation of Escherichia coli ribosomes
    • Wada, A. 1998. Growth phase coupled modulation of Escherichia coli ribosomes. Genes Cells 3:203-208.
    • (1998) Genes Cells , vol.3 , pp. 203-208
    • Wada, A.1
  • 95
    • 0034966692 scopus 로고    scopus 로고
    • Indole can act as an extracellular signal in Escherichia coli
    • Wang, D., X. Ding, and P. N. Rather. 2001. Indole can act as an extracellular signal in Escherichia coli. J. Bacteriol. 183:4210-4216.
    • (2001) J. Bacteriol. , vol.183 , pp. 4210-4216
    • Wang, D.1    Ding, X.2    Rather, P.N.3
  • 98
    • 0029935116 scopus 로고    scopus 로고
    • Sequences in the -35 region of Escherichia coli rpoS-dependent genes promote transcription by ECTS
    • Wise, A., R. Brems, V. Ramakrishnan, and M. Villarejo. 1996. Sequences in the -35 region of Escherichia coli rpoS-dependent genes promote transcription by ECTS. J. Bacteriol. 178:2785-2793.
    • (1996) J. Bacteriol. , vol.178 , pp. 2785-2793
    • Wise, A.1    Brems, R.2    Ramakrishnan, V.3    Villarejo, M.4
  • 99
    • 0027463636 scopus 로고
    • Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: Growth phase- and growth rate-dependent control
    • Yamagishi, M., H. Matsushima, A. Wada, M. Sakagami, N. Fujita, and A. Ishihama. 1993. Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control. EMBO J. 12:625-630.
    • (1993) EMBO J. , vol.12 , pp. 625-630
    • Yamagishi, M.1    Matsushima, H.2    Wada, A.3    Sakagami, M.4    Fujita, N.5    Ishihama, A.6
  • 100
    • 0027299601 scopus 로고
    • A stationary-phase protein of Escherichia coli that affects the mode of association between the Trp repressor protein and operator-bearing DNA
    • Yang, W., L. Ni, and R. L. Somerville. 1993. A stationary-phase protein of Escherichia coli that affects the mode of association between the Trp repressor protein and operator-bearing DNA. Proc. Natl. Acad. Sci. USA 90:5796-5800.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 5796-5800
    • Yang, W.1    Ni, L.2    Somerville, R.L.3
  • 101
    • 0028089194 scopus 로고
    • Molecular characterization of the promoter of osmY, an rpoS-dependent gene
    • Yim, H. H., R. L. Brems, and M. Villarejo. 1994. Molecular characterization of the promoter of osmY, an rpoS-dependent gene. J. Bacteriol. 176:100-107.
    • (1994) J. Bacteriol. , vol.176 , pp. 100-107
    • Yim, H.H.1    Brems, R.L.2    Villarejo, M.3
  • 102
    • 0037473189 scopus 로고    scopus 로고
    • Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture
    • Yoon, S. H., M. J. Han, S. Y. Lee, K. J. Jeong, and J. S. Yoo. 2003. Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. Biotechnol. Bioeng. 81:753-767.
    • (2003) Biotechnol. Bioeng. , vol.81 , pp. 753-767
    • Yoon, S.H.1    Han, M.J.2    Lee, S.Y.3    Jeong, K.J.4    Yoo, J.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.