-
1
-
-
9344261804
-
Stress and how bacteria cope with death and survival
-
Aertsen, A., and C. W. Michiels, 2004 Stress and how bacteria cope with death and survival. Crit. Rev. Microbiol. 30: 263-273.
-
(2004)
Crit. Rev. Microbiol.
, vol.30
, pp. 263-273
-
-
Aertsen, A.1
Michiels, C.W.2
-
2
-
-
0031736121
-
Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
-
Aravind, L., R. L. Tatusov, Y. I. Wolf, D. R. Walker, and E. V. Koonin, 1998 Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 14: 442-444.
-
(1998)
Trends Genet.
, vol.14
, pp. 442-444
-
-
Aravind, L.1
Tatusov, R.L.2
Wolf, Y.I.3
Walker, D.R.4
Koonin, E.V.5
-
3
-
-
84993881895
-
Recombination and the immortality of the germ line
-
Bell, G., 1988 Recombination and the immortality of the germ line. J. Evol. Biol. 1: 67-82.
-
(1988)
J. Evol. Biol.
, vol.1
, pp. 67-82
-
-
Bell, G.1
-
4
-
-
0001652478
-
Is meiotic recombination an adaptation for repairing DNA, producing genetic variation, or both?
-
edited by R. E. Michod, and B. R. Levin. Sinauer Associates, Sunderland, MA.
-
Bernstein, H., F. A. Hopf, and R. E. Michod, 1988 Is meiotic recombination an adaptation for repairing DNA, producing genetic variation, or both? pp. 139-160 in The Evolution of Sex, edited by R. E. Michod, and B. R. Levin. Sinauer Associates, Sunderland, MA.
-
(1988)
The Evolution of Sex
, pp. 139-160
-
-
Bernstein, H.1
Hopf, F.A.2
Michod, R.E.3
-
5
-
-
33645118963
-
The role of horizontal gene transfer in the spread of trimethoprim-sulfamethoxazole resistance among uropathogenic Escherichia coli in Europe and Canada
-
Blahna, M. T., C. A. Zalewski, J. Reuer, G. Kahlmeter, B. Foxman et al., 2006 The role of horizontal gene transfer in the spread of trimethoprim-sulfamethoxazole resistance among uropathogenic Escherichia coli in Europe and Canada. J. Antimicrob. Chemother. 57: 666-672.
-
(2006)
J. Antimicrob. Chemother.
, vol.57
, pp. 666-672
-
-
Blahna, M.T.1
Zalewski, C.A.2
Reuer, J.3
Kahlmeter, G.4
Foxman, B.5
-
6
-
-
77950627556
-
Molecular aspects of gene transfer and foreign DNA acquisition in prokaryotes with regard to safety issues
-
Brigulla, M., and W. Wackernagel, 2010 Molecular aspects of gene transfer and foreign DNA acquisition in prokaryotes with regard to safety issues. Appl. Microbiol. Biotechnol. 86: 1027-1041.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.86
, pp. 1027-1041
-
-
Brigulla, M.1
Wackernagel, W.2
-
7
-
-
34250896106
-
Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers
-
Brochier-Armanet, C., and P. Forterre, 2007 Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers. Archaea 2: 83-93.
-
(2007)
Archaea
, vol.2
, pp. 83-93
-
-
Brochier-Armanet, C.1
Forterre, P.2
-
8
-
-
80052156440
-
Bacterial community assembly based on functional genes rather than species
-
Burke, C., P. Steinberg, D. Rusch, S. Kjelleberg, and T. Thomas, 2011 Bacterial community assembly based on functional genes rather than species. Proc. Natl. Acad. Sci. USA 108: 14288-14293.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14288-14293
-
-
Burke, C.1
Steinberg, P.2
Rusch, D.3
Kjelleberg, S.4
Thomas, T.5
-
9
-
-
33751046554
-
Vertical advection of extracellular DNA by water capillarity in soil columns
-
Ceccherini, M. T., J. Ascher, G. Pietramellara, T. M. Vogel, and P. Nannipieri, 2007 Vertical advection of extracellular DNA by water capillarity in soil columns. Soil Biol. Biochem. 39: 158-163.
-
(2007)
Soil Biol. Biochem.
, vol.39
, pp. 158-163
-
-
Ceccherini, M.T.1
Ascher, J.2
Pietramellara, G.3
Vogel, T.M.4
Nannipieri, P.5
-
10
-
-
0030668902
-
Rapid fixation of deleterious alleles can be caused by Muller's ratchet
-
Charlesworth, B., and D. Charlesworth, 1997 Rapid fixation of deleterious alleles can be caused by Muller's ratchet. Genet. Res. 70: 63-73.
-
(1997)
Genet. Res.
, vol.70
, pp. 63-73
-
-
Charlesworth, B.1
Charlesworth, D.2
-
11
-
-
0027313002
-
Mutation accumulation in finite outbreeding and inbreeding populations
-
Charlesworth, D., M. T. Morgan, and B. Charlesworth, 1993 Mutation accumulation in finite outbreeding and inbreeding populations. Genet. Res. 61: 39-56.
-
(1993)
Genet. Res.
, vol.61
, pp. 39-56
-
-
Charlesworth, D.1
Morgan, M.T.2
Charlesworth, B.3
-
12
-
-
33746320813
-
Induction of competence regulons as a general response to stress in gram-positive bacteria
-
Claverys, J. P., M. Prudhomme, and B. Martin, 2006 Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu. Rev. Microbiol. 60: 451-475.
-
(2006)
Annu. Rev. Microbiol.
, vol.60
, pp. 451-475
-
-
Claverys, J.P.1
Prudhomme, M.2
Martin, B.3
-
13
-
-
64349108725
-
The genetic transformation machinery: composition, localization, and mechanism
-
Claverys, J. P., B. Martin, and P. Polard, 2009 The genetic transformation machinery: composition, localization, and mechanism. FEMS Microbiol. Rev. 33: 643-656.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 643-656
-
-
Claverys, J.P.1
Martin, B.2
Polard, P.3
-
14
-
-
34249711384
-
Small-world networks decrease the speed of Muller's ratchet
-
Combadao, J., P. R. Campos, F. Dionisio, and I. Gordo, 2007 Small-world networks decrease the speed of Muller's ratchet. Genet. Res. 89: 7-18.
-
(2007)
Genet. Res.
, vol.89
, pp. 7-18
-
-
Combadao, J.1
Campos, P.R.2
Dionisio, F.3
Gordo, I.4
-
15
-
-
34548693859
-
Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
-
Cooper, T. F., 2007 Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. PLoS Biol. 5: e225.
-
(2007)
PLoS Biol.
, vol.5
-
-
Cooper, T.F.1
-
16
-
-
57749188258
-
Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria
-
Costechareyre, D., F. Bertolla, and X. Nesme, 2009 Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria. Mol. Biol. Evol. 26: 167-176.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 167-176
-
-
Costechareyre, D.1
Bertolla, F.2
Nesme, X.3
-
17
-
-
48249151749
-
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
-
Dagan, T., Y. Artzy-Randrup, and W. Martin, 2008 Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc. Natl. Acad. Sci. USA 105: 10039-10044.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 10039-10044
-
-
Dagan, T.1
Artzy-Randrup, Y.2
Martin, W.3
-
18
-
-
77956274591
-
Hydrationcontrolled bacterial motility and dispersal on surfaces
-
Dechesne, A., G. Wang, G. Gulez, D. Or, and B. F. Smets, 2010 Hydrationcontrolled bacterial motility and dispersal on surfaces. Proc. Natl. Acad. Sci. USA 107: 14369-14372.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 14369-14372
-
-
Dechesne, A.1
Wang, G.2
Gulez, G.3
Or, D.4
Smets, B.F.5
-
19
-
-
0032697140
-
DNA uptake in bacteria
-
Dubnau, D., 1999 DNA uptake in bacteria. Annu. Rev. Microbiol. 53: 217-244.
-
(1999)
Annu. Rev. Microbiol.
, vol.53
, pp. 217-244
-
-
Dubnau, D.1
-
20
-
-
82755160933
-
Competence increases survival during stress in Streptococcus pneumoniae
-
Engelmoer, D. J., and D. E. Rozen, 2011 Competence increases survival during stress in Streptococcus pneumoniae. Evolution 65: 3475-3485.
-
(2011)
Evolution
, vol.65
, pp. 3475-3485
-
-
Engelmoer, D.J.1
Rozen, D.E.2
-
21
-
-
35048898799
-
Genetic exchange across a species boundary in the archaeal genus ferroplasma
-
Eppley, J. M., G. W. Tyson, W. M. Getz, and J. F. Banfield, 2007 Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics 177: 407-416.
-
(2007)
Genetics
, vol.177
, pp. 407-416
-
-
Eppley, J.M.1
Tyson, G.W.2
Getz, W.M.3
Banfield, J.F.4
-
22
-
-
0035793056
-
Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences
-
Feil, E. J., E. C. Holmes, D. E. Bessen, M. S. Chan, N. P. Day et al., 2001 Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc. Natl. Acad. Sci. USA 98: 182-187.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 182-187
-
-
Feil, E.J.1
Holmes, E.C.2
Bessen, D.E.3
Chan, M.S.4
Day, N.P.5
-
23
-
-
0034128665
-
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data
-
Feil, E. J., J. M. Smith, M. C. Enright, and B. G. Spratt, 2000 Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. Genetics 154: 1439-1450.
-
(2000)
Genetics
, vol.154
, pp. 1439-1450
-
-
Feil, E.J.1
Smith, J.M.2
Enright, M.C.3
Spratt, B.G.4
-
25
-
-
0016110957
-
The evolutionary advantage of recombination
-
Felsenstein, J., 1974 The evolutionary advantage of recombination. Genetics 78: 737-756.
-
(1974)
Genetics
, vol.78
, pp. 737-756
-
-
Felsenstein, J.1
-
26
-
-
34250088572
-
Microenvironments of soil microorganisms
-
Foster, R. C., 1988 Microenvironments of soil microorganisms. Biol. Fertil. Soils 6: 189-203.
-
(1988)
Biol. Fertil. Soils
, vol.6
, pp. 189-203
-
-
Foster, R.C.1
-
27
-
-
0028149511
-
Transformation of Bacillus subtilis by DNA bound on clay in nonsterile soil
-
Gallori, E., M. Bazzicalupo, L. Dal Canto, R. Fani, P. Nannipieri et al., 1994 Transformation of Bacillus subtilis by DNA bound on clay in nonsterile soil. FEMS Microbiol. Ecol. 15: 119-126.
-
(1994)
FEMS Microbiol. Ecol.
, vol.15
, pp. 119-126
-
-
Gallori, E.1
Bazzicalupo, M.2
Dal Canto, L.3
Fani, R.4
Nannipieri, P.5
-
28
-
-
67651113811
-
Stress-induced prophage DNA replication in Salmonella enterica serovar Typhimurium
-
Garcia-Russell, N., B. Elrod, and K. Dominguez, 2009 Stress-induced prophage DNA replication in Salmonella enterica serovar Typhimurium. Infect. Genet. Evol. 9: 889-895.
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 889-895
-
-
Garcia-Russell, N.1
Elrod, B.2
Dominguez, K.3
-
30
-
-
84865074474
-
Dynamic mutation-selection balance as an evolutionary attractor
-
Goyal, S., D. J. Balick, E. R. Jerison, R. A. Neher, B. I. Shraiman et al., 2012 Dynamic mutation-selection balance as an evolutionary attractor. Genetics 191: 1309-1319.
-
(2012)
Genetics
, vol.191
, pp. 1309-1319
-
-
Goyal, S.1
Balick, D.J.2
Jerison, E.R.3
Neher, R.A.4
Shraiman, B.I.5
-
31
-
-
2142704282
-
Spatial scales of soil bacterial diversity-the size of a clone
-
Grundmann, G. L., 2004 Spatial scales of soil bacterial diversity-the size of a clone. FEMS Microbiol. Ecol. 48: 119-127.
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, pp. 119-127
-
-
Grundmann, G.L.1
-
32
-
-
0033779659
-
Microscale diversity of the genus Nitrobacter in soil on the basis of analysis of genes encoding rRNA
-
Grundmann, G. L., and P. Normand, 2000 Microscale diversity of the genus Nitrobacter in soil on the basis of analysis of genes encoding rRNA. Appl. Environ. Microbiol. 66: 4543-4546.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4543-4546
-
-
Grundmann, G.L.1
Normand, P.2
-
33
-
-
0018029597
-
The accumulation of deleterious genes in a population-Muller's ratchet
-
Haigh, J., 1978 The accumulation of deleterious genes in a population-Muller's ratchet. Theor. Popul. Biol. 14: 251-267.
-
(1978)
Theor. Popul. Biol.
, vol.14
, pp. 251-267
-
-
Haigh, J.1
-
34
-
-
0035956876
-
Metapopulation extinction caused by mutation accumulation
-
Higgins, K., and M. Lynch, 2001 Metapopulation extinction caused by mutation accumulation. Proc. Natl. Acad. Sci. USA 98: 2928-2933.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 2928-2933
-
-
Higgins, K.1
Lynch, M.2
-
35
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill, W. G., and A. Robertson, 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
-
(1966)
Genet. Res.
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
36
-
-
38849130017
-
Double illegitimate recombination events integrate DNA segments through two different mechanisms during natural transformation of Acinetobacter baylyi
-
Hulter, N., and W. Wackernagel, 2008 Double illegitimate recombination events integrate DNA segments through two different mechanisms during natural transformation of Acinetobacter baylyi. Mol. Microbiol. 67: 984-995.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 984-995
-
-
Hulter, N.1
Wackernagel, W.2
-
37
-
-
36849090593
-
Natural genetic transformation: prevalence, mechanisms and function
-
Johnsborg, O., V. Eldholm, and L. S. Havarstein, 2007 Natural genetic transformation: prevalence, mechanisms and function. Res. Microbiol. 158: 767-778.
-
(2007)
Res. Microbiol.
, vol.158
, pp. 767-778
-
-
Johnsborg, O.1
Eldholm, V.2
Havarstein, L.S.3
-
38
-
-
84874765546
-
Programmed protection of foreign DNA from restriction allows pathogenicity island exchange during pneumococcal transformation
-
Johnston, C., B. Martin, C. Granadel, P. Polard, and J. P. Claverys, 2013 Programmed protection of foreign DNA from restriction allows pathogenicity island exchange during pneumococcal transformation. PLoS Pathog. 9: e1003178.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Johnston, C.1
Martin, B.2
Granadel, C.3
Polard, P.4
Claverys, J.P.5
-
39
-
-
33748428600
-
Interference among deleterious mutations favours sex and recombination in finite populations
-
Keightley, P. D., and S. P. Otto, 2006 Interference among deleterious mutations favours sex and recombination in finite populations. Nature 443: 89-92.
-
(2006)
Nature
, vol.443
, pp. 89-92
-
-
Keightley, P.D.1
Otto, S.P.2
-
40
-
-
63149098907
-
Horizontal gene transfer of virulence determinants in selected bacterial foodborne pathogens
-
Kelly, B. G., A. Vespermann, and D. J. Bolton, 2009 Horizontal gene transfer of virulence determinants in selected bacterial foodborne pathogens. Food Chem. Toxicol. 47: 969-977.
-
(2009)
Food Chem. Toxicol.
, vol.47
, pp. 969-977
-
-
Kelly, B.G.1
Vespermann, A.2
Bolton, D.J.3
-
41
-
-
84894578625
-
-
('Hamidashi Seibutsugaku') (in Japanese). Heibonsha, Tokyo.
-
Komatsu, S., 1980 Overstepping Biology ("Hamidashi Seibutsugaku") (in Japanese). Heibonsha, Tokyo.
-
(1980)
Overstepping Biology
-
-
Komatsu, S.1
-
42
-
-
0023737547
-
Deleterious mutations and the evolution of sexual reproduction
-
Kondrashov, A. S., 1988 Deleterious mutations and the evolution of sexual reproduction. Nature 336: 435-440.
-
(1988)
Nature
, vol.336
, pp. 435-440
-
-
Kondrashov, A.S.1
-
43
-
-
0027486081
-
Classification of hypotheses on the advantage of amphimixis
-
Kondrashov, A. S., 1993 Classification of hypotheses on the advantage of amphimixis. J. Hered. 84: 372-387.
-
(1993)
J. Hered.
, vol.84
, pp. 372-387
-
-
Kondrashov, A.S.1
-
44
-
-
80051801494
-
-
FT Press Science, Upper Saddle River, NJ.
-
Koonin, E. V., 2011 The Logic of Chance. FT Press Science, Upper Saddle River, NJ.
-
(2011)
The Logic of Chance
-
-
Koonin, E.V.1
-
45
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: quantification and classification
-
Koonin, E. V., K. S. Makarova, and L. Aravind, 2001 Horizontal gene transfer in prokaryotes: quantification and classification. Annu. Rev. Microbiol. 55: 709-742.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
46
-
-
33846659065
-
Importance of widespread gene transfer agent genes in alpha-proteobacteria
-
Lang, A. S., and J. T. Beatty, 2007 Importance of widespread gene transfer agent genes in alpha-proteobacteria. Trends Microbiol. 15: 54-62.
-
(2007)
Trends Microbiol.
, vol.15
, pp. 54-62
-
-
Lang, A.S.1
Beatty, J.T.2
-
47
-
-
84862491510
-
Gene transfer agents: phage-like elements of genetic exchange
-
Lang, A. S., O. Zhaxybayeva, and J. T. Beatty, 2012 Gene transfer agents: phage-like elements of genetic exchange. Nat. Rev. Microbiol. 10: 472-482.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 472-482
-
-
Lang, A.S.1
Zhaxybayeva, O.2
Beatty, J.T.3
-
48
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
Lerat, E., V. Daubin, H. Ochman, and N. A. Moran, 2005 Evolutionary origins of genomic repertoires in bacteria. PLoS Biol. 3: e130.
-
(2005)
PLoS Biol.
, vol.3
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
49
-
-
0013569028
-
The evolution of sex in bacteria
-
edited by R. E. Michod, and B. R. Levin. Sinauer Associates, Sunderland, MA.
-
Levin, B. R., 1988 The evolution of sex in bacteria, pp. 194-211 in The Evolution of Sex, edited by R. E. Michod, and B. R. Levin. Sinauer Associates, Sunderland, MA.
-
(1988)
The Evolution of Sex
, pp. 194-211
-
-
Levin, B.R.1
-
50
-
-
70149105095
-
The population and evolutionary dynamics of homologous gene recombination in bacterial populations
-
Levin, B. R., and O. E. Cornejo, 2009 The population and evolutionary dynamics of homologous gene recombination in bacterial populations. PLoS Genet. 5: e1000601.
-
(2009)
PLoS Genet.
, vol.5
-
-
Levin, B.R.1
Cornejo, O.E.2
-
51
-
-
0034089028
-
Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria
-
Levin, B. R., V. Perrot, and N. Walker, 2000 Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria. Genetics 154: 985-997.
-
(2000)
Genetics
, vol.154
, pp. 985-997
-
-
Levin, B.R.1
Perrot, V.2
Walker, N.3
-
52
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz, M. G., and W. Wackernagel, 1994 Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58: 563-602.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 563-602
-
-
Lorenz, M.G.1
Wackernagel, W.2
-
53
-
-
0027428093
-
The mutational meltdown in asexual populations
-
Lynch, M., R. Burger, D. Butcher, and W. Gabriel, 1993 The mutational meltdown in asexual populations. J. Hered. 84: 339-344.
-
(1993)
J. Hered.
, vol.84
, pp. 339-344
-
-
Lynch, M.1
Burger, R.2
Butcher, D.3
Gabriel, W.4
-
54
-
-
0032709783
-
DNA sequence similarity requirements for interspecific recombination in Bacillus
-
Majewski, J., and F. M. Cohan, 1999 DNA sequence similarity requirements for interspecific recombination in Bacillus. Genetics 153: 1525-1533.
-
(1999)
Genetics
, vol.153
, pp. 1525-1533
-
-
Majewski, J.1
Cohan, F.M.2
-
55
-
-
67649872627
-
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
-
Maslov, S., S. Krishna, T. Y. Pang, and K. Sneppen, 2009 Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proc. Natl. Acad. Sci. USA 106: 9743-9748.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9743-9748
-
-
Maslov, S.1
Krishna, S.2
Pang, T.Y.3
Sneppen, K.4
-
58
-
-
83855165692
-
Extreme genome reduction in symbiotic bacteria
-
McCutcheon, J. P., and N. A. Moran, 2012 Extreme genome reduction in symbiotic bacteria. Nat. Rev. Microbiol. 10: 13-26.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 13-26
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
59
-
-
77957355684
-
High frequency of horizontal gene transfer in the oceans
-
McDaniel, L. D., E. Young, J. Delaney, F. Ruhnau, K. B. Ritchie et al., 2010 High frequency of horizontal gene transfer in the oceans. Science 330: 50.
-
(2010)
Science
, vol.330
, pp. 50
-
-
McDaniel, L.D.1
Young, E.2
Delaney, J.3
Ruhnau, F.4
Ritchie, K.B.5
-
60
-
-
79954532607
-
Rickettsial evolution in the light of comparative genomics
-
Merhej, V., and D. Raoult, 2011 Rickettsial evolution in the light of comparative genomics. Biol. Rev. Camb. Philos. Soc. 86: 379-405.
-
(2011)
Biol. Rev. Camb. Philos. Soc.
, vol.86
, pp. 379-405
-
-
Merhej, V.1
Raoult, D.2
-
62
-
-
0029866448
-
Accelerated evolution and Muller's ratchet in endosymbiotic bacteria
-
Moran, N. A., 1996 Accelerated evolution and Muller's ratchet in endosymbiotic bacteria. Proc. Natl. Acad. Sci. USA 93: 2873-2878.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 2873-2878
-
-
Moran, N.A.1
-
63
-
-
33748360105
-
The cyanobacterial genome core and the origin of photosynthesis
-
Mulkidjanian, A. Y., E. V. Koonin, K. S. Makarova, S. L. Mekhedov, A. Sorokin et al., 2006 The cyanobacterial genome core and the origin of photosynthesis. Proc. Natl. Acad. Sci. USA 103: 13126-13131.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13126-13131
-
-
Mulkidjanian, A.Y.1
Koonin, E.V.2
Makarova, K.S.3
Mekhedov, S.L.4
Sorokin, A.5
-
64
-
-
50549201557
-
The relation of recombination to mutational advance
-
Muller, H. J., 1964 The relation of recombination to mutational advance. Mutat. Res. 106: 2-9.
-
(1964)
Mutat. Res.
, vol.106
, pp. 2-9
-
-
Muller, H.J.1
-
65
-
-
84865097372
-
Fluctuations of fitness distributions and the rate of Muller's ratchet
-
Neher, R. A., and B. I. Shraiman, 2012 Fluctuations of fitness distributions and the rate of Muller's ratchet. Genetics 191: 1283-1293.
-
(2012)
Genetics
, vol.191
, pp. 1283-1293
-
-
Neher, R.A.1
Shraiman, B.I.2
-
67
-
-
38949182262
-
Release and persistence of extracellular DNA in the environment
-
Nielsen, K. M., P. J. Johnsen, D. Bensasson, and D. Daffonchio, 2007 Release and persistence of extracellular DNA in the environment. Environ. Biosafety Res. 6: 37-53.
-
(2007)
Environ. Biosafety Res.
, vol.6
, pp. 37-53
-
-
Nielsen, K.M.1
Johnsen, P.J.2
Bensasson, D.3
Daffonchio, D.4
-
68
-
-
58149492429
-
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
-
Novichkov, P. S., Y. I. Wolf, I. Dubchak, and E. V. Koonin, 2009 Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J. Bacteriol. 191: 65-73.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 65-73
-
-
Novichkov, P.S.1
Wolf, Y.I.2
Dubchak, I.3
Koonin, E.V.4
-
69
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman, H., J. G. Lawrence, and E. A. Groisman, 2000 Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
70
-
-
0036209507
-
Resolving the paradox of sex and recombination
-
Otto, S. P., and T. Lenormand, 2002 Resolving the paradox of sex and recombination. Nat. Rev. Genet. 3: 252-261.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 252-261
-
-
Otto, S.P.1
Lenormand, T.2
-
71
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
Pál, C., B. Papp, and M. J. Lercher, 2005 Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat. Genet. 37: 1372-1375.
-
(2005)
Nat. Genet.
, vol.37
, pp. 1372-1375
-
-
Pál, C.1
Papp, B.2
Lercher, M.J.3
-
72
-
-
0023319787
-
Accumulation of mutations in sexual and asexual populations
-
Pamilo, P., M. Nei, and W.-H. Li, 1987 Accumulation of mutations in sexual and asexual populations. Genet. Res. 49: 135-146.
-
(1987)
Genet. Res.
, vol.49
, pp. 135-146
-
-
Pamilo, P.1
Nei, M.2
Li, W.-H.3
-
73
-
-
59449100317
-
Extracellular DNA in soil and sediment: fate and ecological relevance
-
Pietramellara, G., J. Ascher, F. Borgogni, M. T. Ceccherini, G. Guerri et al., 2009 Extracellular DNA in soil and sediment: fate and ecological relevance. Biol. Fertil. Soils 45: 219-235.
-
(2009)
Biol. Fertil. Soils
, vol.45
, pp. 219-235
-
-
Pietramellara, G.1
Ascher, J.2
Borgogni, F.3
Ceccherini, M.T.4
Guerri, G.5
-
74
-
-
70350732798
-
Leaching and transformability of transgenic DNA in unsaturated soil columns
-
Pote, J., M. Teresa Ceccherini, W. Rosselli, W. Wildi, P. Simonet et al., 2010 Leaching and transformability of transgenic DNA in unsaturated soil columns. Ecotoxicol. Environ. Saf. 73: 67-72.
-
(2010)
Ecotoxicol. Environ. Saf.
, vol.73
, pp. 67-72
-
-
Pote, J.1
Teresa Ceccherini, M.2
Rosselli, W.3
Wildi, W.4
Simonet, P.5
-
75
-
-
33745920513
-
Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae
-
Prudhomme, M., L. Attaiech, G. Sanchez, B. Martin, and J. P. Claverys, 2006 Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae. Science 313: 89-92.
-
(2006)
Science
, vol.313
, pp. 89-92
-
-
Prudhomme, M.1
Attaiech, L.2
Sanchez, G.3
Martin, B.4
Claverys, J.P.5
-
76
-
-
0024005392
-
Evolution of bacterial transformation: is sex with dead cells ever better than no sex at all?
-
Redfield, R. J., 1988 Evolution of bacterial transformation: is sex with dead cells ever better than no sex at all? Genetics 119: 213-221.
-
(1988)
Genetics
, vol.119
, pp. 213-221
-
-
Redfield, R.J.1
-
77
-
-
0035430787
-
Do bacteria have sex?
-
Redfield, R. J., 2001 Do bacteria have sex? Nat. Rev. Genet. 2: 634-639.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 634-639
-
-
Redfield, R.J.1
-
78
-
-
0030984550
-
The evolution of bacterial transformation: sex with poor relations
-
Redfield, R. J., M. R. Schrag, and A. M. Dean, 1997 The evolution of bacterial transformation: sex with poor relations. Genetics 146: 27-38.
-
(1997)
Genetics
, vol.146
, pp. 27-38
-
-
Redfield, R.J.1
Schrag, M.R.2
Dean, A.M.3
-
79
-
-
0035158508
-
Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity
-
Rius, N., M. C. Fuste, C. Guasp, J. Lalucat, and J. G. Loren, 2001 Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity. J. Bacteriol. 183: 736-744.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 736-744
-
-
Rius, N.1
Fuste, M.C.2
Guasp, C.3
Lalucat, J.4
Loren, J.G.5
-
80
-
-
37848998555
-
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation
-
Rouzine, I. M., E. Brunet, and C. O. Wilke, 2008 The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor. Popul. Biol. 73: 24-46.
-
(2008)
Theor. Popul. Biol.
, vol.73
, pp. 24-46
-
-
Rouzine, I.M.1
Brunet, E.2
Wilke, C.O.3
-
81
-
-
84859499489
-
Population genomics of early events in the ecological differentiation of bacteria
-
Shapiro, B. J., J. Friedman, O. X. Cordero, S. P. Preheim, S. C. Timberlake et al., 2012 Population genomics of early events in the ecological differentiation of bacteria. Science 336: 48-51.
-
(2012)
Science
, vol.336
, pp. 48-51
-
-
Shapiro, B.J.1
Friedman, J.2
Cordero, O.X.3
Preheim, S.P.4
Timberlake, S.C.5
-
82
-
-
0031888392
-
Natural genetic transformation of Pseudomonas stutzeri in a non-sterile soil
-
Sikorski, J., S. Graupner, M. G. Lorenz, and W. Wackernagel, 1998 Natural genetic transformation of Pseudomonas stutzeri in a non-sterile soil. Microbiology 144: 569-576.
-
(1998)
Microbiology
, vol.144
, pp. 569-576
-
-
Sikorski, J.1
Graupner, S.2
Lorenz, M.G.3
Wackernagel, W.4
-
83
-
-
0002188614
-
Gene transfer among bacteria in soil
-
edited by S. B. Levy, and R. V. Miller. McGraw-Hill, New York.
-
Stotzky, G., 1989 Gene transfer among bacteria in soil, pp. 165-222 in Gene Transfer in the Environment. edited by S. B. Levy, and R. V. Miller. McGraw-Hill, New York.
-
(1989)
Gene Transfer in the Environment
, pp. 165-222
-
-
Stotzky, G.1
-
84
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas, C. M., and K. M. Nielsen, 2005 Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3: 711-721.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
85
-
-
79851505378
-
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
-
Treangen, T. J., and E. P. Rocha, 2011 Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 7: e1001284.
-
(2011)
PLoS Genet.
, vol.7
-
-
Treangen, T.J.1
Rocha, E.P.2
-
86
-
-
0242586014
-
Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil
-
Vogel, J., P. Normand, J. Thioulouse, X. Nesme, and G. L. Grundmann, 2003 Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil. Appl. Environ. Microbiol. 69: 1482-1487.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1482-1487
-
-
Vogel, J.1
Normand, P.2
Thioulouse, J.3
Nesme, X.4
Grundmann, G.L.5
-
87
-
-
66249147580
-
Why do bacteria engage in homologous recombination?
-
Vos, M., 2009 Why do bacteria engage in homologous recombination? Trends Microbiol. 17: 226-232.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 226-232
-
-
Vos, M.1
-
88
-
-
58549084151
-
A comparison of homologous recombination rates in bacteria and archaea
-
Vos, M., and X. Didelot, 2009 A comparison of homologous recombination rates in bacteria and archaea. ISME J. 3: 199-208.
-
(2009)
ISME J.
, vol.3
, pp. 199-208
-
-
Vos, M.1
Didelot, X.2
-
89
-
-
84884973643
-
Micro-scale determinants of bacterial diversity in soil
-
Vos, M., A. B. Wolf, S. J. Jennings, and G. A. Kowalchuk, 2013 Micro-scale determinants of bacterial diversity in soil. FEMS Microbiol. Rev. 37: 936-954.
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 936-954
-
-
Vos, M.1
Wolf, A.B.2
Jennings, S.J.3
Kowalchuk, G.A.4
-
90
-
-
14644403101
-
Microbial horizontal gene transfer and the DNA release from transgenic crop plants
-
Vries, J., and W. Wackernagel, 2005 Microbial horizontal gene transfer and the DNA release from transgenic crop plants. Plant Soil 266: 91-104.
-
(2005)
Plant Soil
, vol.266
, pp. 91-104
-
-
Vries, J.1
Wackernagel, W.2
-
91
-
-
0001065231
-
Homology requirements for recombination in Escherichia coli
-
Watt, V. M., C. J. Ingles, M. S. Urdea, and W. J. Rutter, 1985 Homology requirements for recombination in Escherichia coli. Proc. Natl. Acad. Sci. USA 82: 4768-4772.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4768-4772
-
-
Watt, V.M.1
Ingles, C.J.2
Urdea, M.S.3
Rutter, W.J.4
-
92
-
-
14744282987
-
Diversity in times of adversity: probabilistic strategies in microbial survival games
-
Wolf, D. M., V. V. Vazirani, and A. P. Arkin, 2005 Diversity in times of adversity: probabilistic strategies in microbial survival games. J. Theor. Biol. 234: 227-253.
-
(2005)
J. Theor. Biol.
, vol.234
, pp. 227-253
-
-
Wolf, D.M.1
Vazirani, V.V.2
Arkin, A.P.3
-
93
-
-
78049419053
-
Optimal strategy for competence differentiation in bacteria
-
Wylie, C. S., A. D. Trout, D. A. Kessler, and H. Levine, 2010 Optimal strategy for competence differentiation in bacteria. PLoS Genet. 6: e1001108.
-
(2010)
PLoS Genet.
, vol.6
-
-
Wylie, C.S.1
Trout, A.D.2
Kessler, D.A.3
Levine, H.4
-
94
-
-
84865417779
-
Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species
-
Yahara, K., M. Kawai, Y. Furuta, N. Takahashi, N. Handa et al., 2012 Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species. Genome Biol. Evol. 4: 628-640.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 628-640
-
-
Yahara, K.1
Kawai, M.2
Furuta, Y.3
Takahashi, N.4
Handa, N.5
-
95
-
-
58949092783
-
Microbial distribution in soils: physics and scaling
-
edited by L. S. Donald. Academic Press, San Diego.
-
Young, I. M., J. W. Crawford, N. Nunan, W. Otten, and A. Spiers, 2008 Microbial distribution in soils: physics and scaling, pp. 81-121 in Advances in Agronomy. edited by L. S. Donald. Academic Press, San Diego.
-
(2008)
Advances in Agronomy
, pp. 81-121
-
-
Young, I.M.1
Crawford, J.W.2
Nunan, N.3
Otten, W.4
Spiers, A.5
-
96
-
-
84868319858
-
Extracellular DNA release by undomesticated Bacillus subtilis is regulated by early competence
-
Zafra, O., M. Lamprecht-Grandio, C. G. de Figueras, and J. E. Gonzalez-Pastor, 2012 Extracellular DNA release by undomesticated Bacillus subtilis is regulated by early competence. PLoS ONE 7: e48716.
-
(2012)
PLoS ONE
, vol.7
-
-
Zafra, O.1
Lamprecht-Grandio, M.2
de Figueras, C.G.3
Gonzalez-Pastor, J.E.4
|