Vertical advection of extracellular DNA by water capillarity in soil columns

Soil Biology and Biochemistry

Volumn 39, Issue 1, 2007, Pages 158-163

  Ceccherini, Maria Teresa ^a   Ascher, Judith ^a   Pietramellara, Giacomo ^a   Vogel, Timothy M ^b   Nannipieri, Paolo ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

^b University of Lyon   (France)

Author keywords

Extracellular DNA; Nucleic acid movement; PCR monitoring; Soil microcosm; Water capillary rise

Indexed keywords

AQUIFERS; BACTERIA; DEGRADATION; GENES; SOILS; WATER;

EXTRACELLULAR DNA; NUCLEIC ACID MOVEMENT; PCR MONITORING; SOIL MICROCOSM; WATER-CAPILLARY RISE;

DNA;

ADVECTION; AQUIFER; BACTERIUM; CAPILLARITY; CAPILLARY FRINGE; DNA; MICROCOSM; SOIL COLUMN; VERTICAL MOVEMENT;

BACTERIA (MICROORGANISMS);

EID: 33751046554     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2006.07.006     Document Type: Article

References (20)

1. Agnelli A., Ascher J., Corti G., Ceccherini M.T., Nannipieri P., and Pietramellara G. Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA. Soil Biology & Biochemistry 36 (2004) 859-868
2. Badalucco L., De Cesare F., Grego S., Landi L., and Nannipieri P. Do physical properties of soil affect chloroform efficiency in lysing microbial biomass?. Soil Biology & Biochemistry 29 (1997) 1135-1142
3. Beck E., Ludwig G., Auerswald E.A., Reiss B., and Schaller H. Nucleotide sequence and exact localization of the neomycin phosphotransferase gene from transposon Tn5. Gene 19 (1982) 327-336
4. Bensimon D., Simon A.J., Croquette V., and Bensimon A. Stretching DNA with a receding meniscus: experiments and models. Physical Review Letters 74 (1995) 4754-4757
5. Bertolla F., Pepin R., Passelegue-Robe E., Paget E., Simkin A., Nesme X., and Simonet P. Plant genome complexity may be a factor limiting in situ the transfer of transgenic plant genes to the phytopathogen Ralstonia solanacearum. Applied and Environmental Microbiology 66 (2000) 4161-4167
6. Ceccherini M.T., Potè J., Kay E., Tran Van V., Maréchal J., Pietramellara G., Nannipieri P., Vogel T.M., and Simonet P. Degradation and transformability of DNA from transgenic leaves. Applied and Environmental Microbiology 69 (2003) 673-678
7. de Vries J., Heine M., Harms M.K., and Wackernagel W. Spread of recombinant DNA by roots and pollen of transgenic potato plants, identified by highly specific biomonitoring using natural transformation of an Acinetobacter sp. Applied and Environmental Microbiology 69 (2003) 4455-4462
8. Depountis N., Davies M.C.R., Harris C., Burkhart S., Thorel L., Rezzoug A., Koenid D., Merrifield C., and Craig W.H. Centrifuge modeling of capillary rise. Engineering Geology 60 (2001) 95-106
9. Droogers P., Bastiaanssen W.G.M., Beyazguel M., Kayam Y., Kite G.W., and Murray-Rust H. Distributed agro-hydrological modeling of an irrigation system in western Turkey. Agricultural Water Management 43 (2000) 183-202
10. Duggan P.S., Chambers P.A., Heritage J., and Forbes J.M. Survival of free DNA encoding antibiotic resistance from transgenic maize and the transformation activity of DNA in ovine saliva, ovine rumen fluid and silage effluent. FEMS Microbiology Letters 191 (2000) 71-77
11. England L.S., Pollok J., Vincent M., Kreutzweiser D., and Holmes S.B. Persistence of extracellular baculaviral DNA in aquatic microcosms: extraction, purification and amplification by polymerase chain reaction (PCR). Molecular and Cellular Probes 19 (2005) 75-80
12. Gebhard F., and Smalla K. Monitoring field releases of genetically modified sugar beets for persistence of transgenic plant DNA and horizontal gene transfer. FEMS Microbiology Ecology 28 (1999) 261-272
13. Joenje H., and Venema G. Different nuclease activities in competent and noncompetent Bacillus subtilis. Journal of Bacteriology 122 (1975) 25-33
14. Lal R. Environmental soil physics. Soil Science 165 (2000) 453-454
15. Marinov D., Querner E., and Roelsma J. Simulation of water flow and nitrogen transport for a Bulgarian experimental plot using SWAP and ANIMO models. Journal of Contaminant Hydrology 77 (2005) 145-164
16. Ogram A., Sayler G.S., and Barkay T. The extraction and purification of microbial DNA from sediments. Journal of Microbiological Methods 7 (1987) 57-66
17. Pietsch K., Waiblinger U., Brodmann P., and Wurz A. Screeningsverfahren zur Identifizierung gentechnisch veränderter pflanzlicher Lebensmittel. Deutsche Lebensmittel-Rundschau 93 (1997) 35-38
18. Potè J., Ceccherini M.T., Van Tran V., Rosselli W., Wildi W., Simonet P., and Vogel T. Fate and transfer of antibiotic resistance genes in saturated soil columns. European Journal of Soil Biology 39 (2003) 65-71
19. Renella G., Mench M., Van der Lelie D., Pietramellara G., Ascher J., Ceccherini M.T., Landi L., and Nannipieri P. Hydrolase activity, microbial biomass and community structure in long-term Cd-contaminated soils. Soil Biology & Biochemistry 36 (2004) 443-451
20. Suh Y., Jin S., Ball T.K., and Benedik M.J. Two-step secretion of the Serratia marcescens extracellular nuclease. Journal of Bacteriology 178 (1996) 3771-3778