A modern concept for Helicascus with a Pleurophomopsis-like asexual state

Sydowia

Volumn 65, Issue 1, 2013, Pages 147-166

  Zhang, Huang ^a   Hyde, Kevin D ^b,c   Abdel Wahab, Mohamed A ^d,e   Abdel Aziz, Eaten A ^e   Ariyawansa, Hiran A ^c   Ko Ko, Thida W ^c   Zhao, Ruilin L ^f   Alias, Siti Aisyah ^g   Bahkali, Ali H ^d   Zhou, Dequn ^a  

^a KUNMING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b RESEARCH INSTITUTE OF FORESTRY   (China)

^c MAE FAH LUANG UNIVERSITY   (Thailand)

^d KING SAUD UNIVERSITY   (Saudi Arabia)

^e Sohag University   (Egypt)

^f SOUTHWEST FORESTRY UNIVERSITY   (China)

^g UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

Mangrove fungi; Morosphaeria; Phylogeny; Pseudostromata

Indexed keywords

EID: 84894347866     PISSN: 00820598     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (67)

1. Aptroot A. (1998) A world revision of Massarina (Ascomycota). Nova Hedwigia 66: 89-162.
2. Boonmee S., Ko Ko T. W., Chukeatirote E., Hyde K. D., Chen H., Cai L., McKenzie E. H. C., Jones E. B. G., Kodsueb R., Bahkali A. H. (2012) Two new kirschsteiniothelia species with a dendryphiopsis anamorph cluster in kirschsteiniotheliaceae fam. nov. Mycologia 103: 698-714.
3. Boonmee S., Zhang Y., Chomnunti R, Chukeatirote E.,Tsui C. K. M., Bahkali A. H., Hyde K. D. (2011) Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Diversity 51: 63-102.
4. Cai L.,Tsui C. K. M., Zhang K. Q., Hyde K. D. (2002) Aquatic fungi from Lake Fuxian,Yunnan, China. Fungal Diversity 9: 57-70. (Pubitemid 44806979)
5. Cai L., Zhang K. Q., McKenzie E. H. C., Hyde K. D. (2003) Freshwater fungi from bamboo and wood submerged in the Liput River in the Philippines. Fungal Diversity 13: 1-12. (Pubitemid 39081303)
6. Chomnunti P., Schoch C. L., Aguirre-Hudson B., Ko Ko T. W., Hongsanan S., Jones E. B. G., Kodsueb R., Phookamsak R., Chukeatirote E., Bahkali A. H., Hyde K. D. (2011) Capnodiaceae. Fungal Diversity 51:103-134.
7. Dai D. Q., Bhat D. J., Liu J. K., Zhao R. L., Hyde K. D. (2012) Bambusicola, a new genus from bamboo with asexual and sexual morphs. Cryptogamie Mycologie 33: 363-379.
8. Hall T. (1999) BioEdit computer program, version 7.0.9. (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).
9. Ho W. H.,Yanna, Hyde K. D., Hodgkiss J. I. (2002) Seasonality and sequential occurrence of fungi on wood submerged in tai po kau forest stream, Hong Kong. Fungal Diversity 10: 21-43.
10. Ho W. H., Hyde K. D., Hodgkiss J. I.,Yanna (2001) Fungal communities on submerged wood from streams in Brunei, Hong Kong, and Malaysia. Mycological Research 105: 1492-1501. (Pubitemid 34134588)
11. Hodhod M. S., Abdel-Wahab M. A., Bahkali A. H., Hyde K. D. (2012) Amarenographium solium sp. nov. from yanbu mangroves in the kingdom of Saudi Arabia. Cryptogamie Mycologie 33: 285-294.
12. Huelsenbeck J. R, Ronquist F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
13. Hyde K. D. (1988) Studies on the tropical marine fungi of Brunei. Botanical Journal of the Linnean Society 98:135-151.
14. Hyde K. D. (1989) Intertidal mangrove fungi from north sumatra. Canadian Journal of Botany 67: 3078-3082.
15. Hyde K. D. (1991) Helicascus kanaloanus, Helicascus nypae sp. nov. and Salsuginea ramicola gen. et sp. nov. from intertidal mangrove wood. Botanica Marina 34: 311-318.
16. Hyde K. D., Aptroot A. (1998) Tropical freshwater species of the genera Massarina and Lophiostoma (Ascomycetes). Nova Hedwigia 66: 489-502. (Pubitemid 28300667)
17. Hyde K. D., Borse B. D. (1986) Marine fungi from seychelles. VI. Massarina velataspora a new marine ascomycotina from mangrove wood. Mycotaxon 27: 161-167.
18. Hyde K. D., McKenzie E. H. C., Ko Ko T. W. (2011) Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2010. Mycosphere 2: 1-88.
19. Hyde K. D., Sutton B. (1992) Nypaella frondicola gen. et sp. nov., Plectophomella nypae sp. nov. and Pleurophomopsis nypae sp. nov.(Coelomycetes) from intertidal fronds of Nypa fruticans. Mycological Research 96: 210-214.
20. Jami E, Slippers B., Wingfield M. J., Gryzenhout M. (2012) Five new species of the Botryosphaeriaceae from Acacia karroo in South Africa. Cryptogamie Mycologie 33: 245-266.
21. Jeewon R., Liew E. C.Y., Hyde K. D. (2004) Phylogenetic evaluation of species nomenclature of Pestalotiopsis in relation to host association. Fungal Diversity 17: 39-55. (Pubitemid 40102925)
22. Jones E. B. G. (1988) Fungi on driftwood collected in the intertidal zone from the Philippines. In: Asian Marine Biology 5, (ed. Morton B.), Hong Kong University Press, Hong Kong, 103-113.
23. Jones E. B. G., Sakayaroj J., Suetrong S., Somrithipol S., Pang K. (2009) Classification of marine Ascomycota, anamorphic taxa and Basidiomycota. Fungal Diversity 35: 1-187.
24. Jones E. B. G.,Tan T. K. (1987) Observations on manglicolous fungi from Malaysia. Transactions of the British Mycological Society 89: 390-392.
25. Kishino H., Hasegawa M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29: 170-179. (Pubitemid 19206089)
26. Kohlmeyer J. (1969) Marine fungi of hawaii including the new genus helicascus. Canadian Journal of Botany 47:1469-1487.
27. Kumiawati E., Zhang H., Chukeatirote E., Sulistyowati L., Moslem M. A., Hyde K. D. (2010) Diversity of freshwater ascomycetes in freshwater bodies at amphoe mae chan, Chiang Rai. Cryptogamie Mycologie 31: 323-331.
28. Liew E. C. Y., Aptroot A., Hyde K. D. (2002) An evaluation of the monophyly of Massarina based on ribosomal DNA sequences. Mycologia 94: 803-813. (Pubitemid 36166485)
29. Liu J. K., Chomnunti P, Cai L., Phookamsak R., Chukeatirote E., Jones E. B. G., Moslem M., Hyde K. D. (2010) Phylogeny and morphology of neodeightonia palmicola sp. nov. from palms. Sydowia 62: 261-276.
30. Liu J. K., Phookamsak R., Doilom M., Wikee S., Li Y. M., Ariyawansha H., Boonmee S., Chomnunti P., Dai D. Q., Bhat J. D. (2012) Towards a natural classification of Botryosphaeriales. Fungal Diversity 57: 149-210.
31. Liu J. K., Phookamsak R., Jones E. B. G., Zhang Y., Ko Ko T. W, Hu H. L., Boonmee S., Doilom M., Chukeatirote E., Bahkali A. H., Wang Y., Hyde K. D. (2011) Astrosphaeriella is polyphyletic with species in fissuroma gen. nov., and neoastrosphaeriella gen. nov. Fungal Diversity 51:135-154.
32. Liu Y. J., Whelen S., Hall B. D. (1999) Phylogenetic relationships among ascomycetes: Evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808.
33. Luo J.,Yin J., Cai L., Zhang K. Q., Hyde K. D. (2004) Freshwater fungi in Lake Dianchi, a heavily polluted lake in Yunnan, China. Fungal Diversity 16: 93-112. (Pubitemid 39538740)
34. Miller M. A., Pfeiffer W, Schwartz T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop (GCE), IEEE, San Diego Supercomput. Center, La Jolla, CA, USA, 1-8.
35. Nylander J. A. A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
36. Page R. D. M. (1996) Tree View: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences. 12: 357-358.
37. Raja H. A., Shearer C. A. (2008) Freshwater ascomycetes: New and noteworthy species from aquatic habitats in Florida. Mycologia 100: 467-489.
38. Raímala B.,Yang Z. (1996) Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
39. Ronquist F., Huelsenbeck J. R (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. (Pubitemid 37038874)
40. Rungjindamai N., Sakayaroj J., Somrithipol S., Plaingam N., Jones E. B. G. (2012) Phylogeny of the appendaged coelomycete genera: Pseudorobillarda, Robillarda, and Xepiculopsis based on nuclear ribosomal DNA sequences. Cryptogamie Mycologie 33: 319-332.
41. Schoch C. L., Crous P. W., Groenewald J. Z., Boehm E. W. A., Burgess T. I., De Gruyter J., De Hoog G. S., Dixon L. J., Grube M., Gueidan C. (2009) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1-15.
42. Shearer C. A. (1993) A new species of Kirschsteiniothelia (Pleosporales) with an unusual fissitunicate ascus. Mycologia 56: 963-969.
43. Shearer C. A., Langsam D. M., Longcore J. E. (2004) Fungi in freshwater habitats. In: Biodiversity of fungi: Inventory and monitoring methods eds Mueller G. M., Bills G. F. and Foster M. S.), Elsevier, Amsterdam, 513-531.
44. Shearer C. A., Raja H. A., Miller A. N., Nelson R, Tanaka K., Hirayama K., Marvanová L., Hyde K. D., Zhang Y. (2009) The molecular phylogeny of freshwater Dothideomycetes. Studies in Mycology 64:145-153.
45. Shenoy B. D., Jeewon R., Hyde K. D. (2007a) Impact of DNA sequence-data on the taxonomy of anamorphic fungi. Fungal Diversity 26: 1-54.
46. Shenoy B. D., Jeewon R., Lam W. H., Bhat D. J.,Than P. R, Taylor P. W. J., Hyde K. D. (2007b) Morpho-molecular characterisation and epitypification of Colletotrichum capsid (Glomerellaceae, Sordariomycetes), the causative agent of anthracnose in chilli. Fungal Diversity 27: 197-211. (Pubitemid 351185235)
47. Shenoy B. D., Jeewon R.,Wang H. K., Amandeep K., Ho W. H., Bhat D. J., Crous P. W., Hyde K. D. (2010) Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides. Fungal Diversity 44: 161-169.
48. Sivichai S., Jones E. B. G. (2003) Teleomorphic-anamorphic connections of freshwater fungi. In: Freshwater Mycology eds Tsui C. K. M., Hyde K. D.), Fungal Diversity Press, Hong Kong: 259-274.
49. Stamatakis A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
50. Stamatakis A., Hoover R, Rougemont J. (2008) A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology 57: 758-771.
51. Suetrong S., Schoch C. L., Spatafora J. W, Kohlmeyer J., Volkmann-Kohlmeyer B., Sakayaroj J., Phongpaichit S., Tanaka K., Hirayama K., Jones E. B. G. (2009) Molecular systematics of the marine Dothideomycetes. Studies in Mycology 64:155-173.
52. thedn. Sinauer Associates, Sunderland, MA, USA.
53. Tanaka K., Hirayama K.,Yonezawa H., Hatakeyama S., Harada Y., Sano T., Shirouzu T., Hosoya T. (2009) Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs. Studies in Mycology 64: 175-209.
54. Thompson J. D., GibsonT. J., Plewniak F., Jeanmougin F, Higgins D. G. (1997)The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. (Pubitemid 28022245)
55. Tsui C. K. M., Hyde K. D. (2004) Biodiversity of fungi on submerged wood in a stream and its estuary in the Tai Ho Bay, Hong Kong. Fungal Diversity 15: 205-220. (Pubitemid 38554737)
56. Tsui C. K. M., Hyde K. D., Hodgkiss I. J. (2001) Longitudinal and temporal distribution of freshwater ascomycetes and dematiaceous hyphomycetes on submerged wood in the Lam Tsuen River, Hong Kong. Journal of the North American Benthological Society 20: 533-549. (Pubitemid 34009637)
57. Tsui K. M., Hyde K. D., Hodgkiss I. J. (2000) Biodiversity of fungi on submerged wood in Hong Kong streams. Aquatic Microbial Ecology 21: 289-298. (Pubitemid 34235194)
58. Vijaykrishna D., Hyde K. D. (2006) Inter- and intra stream variation of lignicolous freshwater fungi in tropical Australia. Fungal Diversity 21: 203-224. (Pubitemid 43962521)
59. Vilgalys R., Hester M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246. (Pubitemid 20236711)
60. Wijayawardene N. N., McKenzie E. H. C., Chukeatirote E., WangY., Hyde K. D. (2012 a) Coelomycetes. Cryptogamie Mycologie 33: 215-244.
61. Wijayawardene N. N., McKenzie E. H. C., Hyde K. D. (2012 b) Towards incorporating anamorphic fungi in a natural classification -checklist and notes for 2011. Mycosphere 3: 157-228.
62. Wijayawardene N. N., Udayanga D., McKenzie E. H. C., Wang Y., Hyde K. D. (2012 c) The future of coelomycete studies. Cryptogamie Mycologie 33: 381-391.
63. Zhang H., Hyde K. D., McKenzie E. H. C., Bahkali A. H., Zhou D. Q. (2012 a) Sequence data reveals phylogenetic affinities of Acrocalymma aquatica sp. nov., Aquasubmersa mircensis gen. et sp. nov. and Clohesyomyces aquaticus (freshwater coelomycetes). Cryptogamie Mycologie 33: 333-346.
64. Zhang Y, Crous P. W, Schoch C. L., Hyde K. D. (2012 b) Pleosporales. Fungal Diversity 53: 1-221.
65. Zhang Y, Schoch C. L., Fournier J., Crous P. W, De Gruyter X, Woudenberg X H. C., Hirayama K., Tanaka K., Pointing S. B., Spatafora X W. (2009 a) Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Studies in Mycology 64: 85-102.
66. Zhang Y, Wang H. K., Fournier X, Crous P.W., Jeewon R., Pointing S. B., Hyde K. D. (2009 b) Towards a phylogenetic clarification of Lophiostoma/ Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225-251.
67. Zhang Y. M., Maharachchikumbura S. S. N., McKenzie E. H. C., Hyde K. D. (2012 c) A novel species of Pestalotiopsis causing leaf spots of Trachycarpus fortunei. Cryptogamie Mycologie 33: 311-318.