Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis

Fungal Diversity

Volumn 51, Issue , 2011, Pages 63-102

  Boonmee, Saranyaphat ^a   Zhang, Ying ^a,b   Chomnunti, Putarak ^a   Chukeatirote, Ekachai ^a   Tsui, Clement K M ^c   Bahkali, Ali H ^d   Hyde, Kevin D ^a,b,d  

^a MAE FAH LUANG UNIVERSITY   (Thailand)

^b Mushroom Research Centre   (Thailand)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^d KING SAUD UNIVERSITY   (Saudi Arabia)

Author keywords

Anamorph; Aquaphila; Dothideomycetes; Helicosporous; Molecular phylogeny; Woody litter fungi

Indexed keywords

ACANTHOSTIGMA; AQUAPHILA; CHAETOSPHAERULINA; DOTHIDEOMYCETES; FUNGI; PERIDIUM; PLEOSPORACEAE; PLEOSPORALES; THAXTERIELLA; TUBEUFIA; TUBEUFIACEAE;

EID: 84863153005     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-011-0147-4     Document Type: Article

References (64)

1. Barr ME (1977) Notes on some 'dimeriaceous' fungi. Mycotaxon 65:149-171
2. Barr ME (1979) A classification of Loculoascomycetes. Mycologia 71:935-957
3. Barr ME (1980) On the family Tubeufiaceae (Pleosporales). Mycotaxon 12:137-167
4. Berlese AN (1893) Descrizione di alcuni nuovi generi di pirenomiceti. Reprint from Atti del Congresso Botanico Internazionale: 1-10.
5. Berlese AN (1894) Icones fungorum omnium hucusque cognitorum. Biblioth Mycol 16A:1-243
6. Bose SK (1961) Studies on Massarina Sacc. and related genera. Phytopathologische Zeitschrift 41:151-213
7. Cai L, Hyde KD, Tsui CKM (2006) Genera of freshwater fungi. Fungal Diver Res Ser 18:1-261
8. Cai L, Hyde KD, Taylor PWJ, Weir BS, Waller J, Abang MM, Zhang JZ, Yang YL, Phoulivong S, Liu ZY, Prihastuti H, Shivas RG, McKenzie EHC, Johnston PR (2009) A polyphasic approach for studying Colletotrichum. Fungal Divers 39:183-204
9. Cannon PF (1997) Two new genera of Ascomycota, and other new or interesting fungi from Slapton Ley National Nature Reserve and its environs. Systema Ascomycetum 15:121-138
10. Crane JL, Shearer CA, Barr ME (1998) A revision of Boerlagiomyces with notes and a key to the saprobic genera of Tubeufiaceae. Canad J Bot 76:602-612 (Pubitemid 28430980)
11. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95-98
12. Hyde KD, Chomnunti P, Crous P, Groenewald J, Damm U, Ko Ko TW, Shivas R, Summerell B, Tan Y (2010) A case for reinventory of Australia's plant pathogens. Persoonia 25:50-60
13. Hyde KD, McKenzie EHC, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2010. Mycosphere 2:1-88
14. Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby's dictionary of the fungi, 9th edn. CABI, Wallingford
15. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby's dictionary of the fungi, 10th edn. CABI, Wallingford
16. Kodsueb R, Lumyong S, Lumyong P, McKenzie EHC, Ho WH, Hyde KD (2004) Acanthostigma and Tubeufia species, including T. claspisphaeria sp. nov., from submerged wood in Hong Kong. Mycologia 96:667-674 (Pubitemid 38763842)
17. Kodsueb R, Jeewon R, Vijaykrishna D, Mckenzie EHC, Lumyong P, Lumyong S, Hyde KD (2006) Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Divers 21:105-130 (Pubitemid 43964781)
18. Ko Ko TW, Stephenson SL, Bahkali AH, Hyde KD (2011) From morphology to molecular biology: can we use sequence data to identify fungal endophytes? Fungal Divers 50:113-120
19. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948 (Pubitemid 350162903)
20. Lumbsch HT, Huhndorf SM (eds.) (2010) Outline of Ascomycota - 2009. Myconet 14:1-64
21. Matsushima T (1975) Icones microfungorum a Matsushima lectorum. Matsushima, Kobe, Japan 209:1-100
22. Nordén B, Sunhede S, Larsson E (2005) New species of Moristroma (Ascomycetes) and phylogenetic position of the genus. Mycol Prog 4:325-332
23. Nylander JAA (2004) MrModeltest 2.3. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
24. Penzig O, Saccardo PA (1904) Icones fungorum javanicorum. E.J. Brill, Leiden
25. Petch T (1921) Studies in entomogenous fungi. 1. The nectriae parasitic on scale insects. Trans Brit Mycol Soc 7:89-167
26. Petrak F (1924) Mykologische Notizen VII. Ann Mycol 22:1-182
27. Petrak F (1951) Ergebnisse einer Revision der Grundtypen verschiedener Gattungen der Askomyzeten und Fungi imperfecti. Sydowia 26:169-198
28. Petrak F (1953) Ein Beitrag zur Pilzflora Floridas. Sydowia 7:103-132
29. Promputtha I, Miller AN (2010) Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park. Mycologia 102:574-587
30. Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mole Evol 43:304-311 (Pubitemid 26315133)
31. Réblová M, Barr M (2000) The genus Acanthostigma (Tubeufiaceae, Pleosporales). Sydowia 52:258-285
32. Rodrigues KF, Samuels GJ (1994) Letendraeopsis palmarum, a new genus and species of loculoascomycetes. Mycologia 86:254-258
33. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572
34. Romero AI, Samuels GJ (1991) Studies on xylophilous fungi from Argentina: VI. Ascomycotina on Eucalyptus viminalis (Myrtaceae). Sydowia 43:228-248
35. Rossman AY (1977) The genus Ophionectria (Euascomycetes, Hypocreales). Mycologia 69:355-391
36. Rossman AY (1978) Podonectria, a genus in the Pleosporales on scale insects. Mycotaxon 7:163-182
37. Rossman AY (1987) The Tubeufiaceae and similar Loculoascomycetes. Mycol Pap 157:1-71
38. Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999) Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1-248
39. Samuels GJ, Müller E (1978) Life history studies of Brazilian Ascomycetes 2. Sydowia 31:137-141
40. Samuels GJ, Rossman AY, Müller E (1979) Life history studies of Brazilian Ascomycetes 6. Three species of Tubeufia with, respectively, dictyosporouspycnidial and helicosporous anamorphs. Sydowia 31:180-192
41. Sánchez RM, Bianchinotti MV (2010) New records in the Tubeufiaceae from Andean Patagonian forests of Argentina. Mycotaxon 111:131-141
42. Sánchez RM, Miller AN, Bianchinotti MV (2011) A new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from the southern hemisphere. Mycologia, doi:10.3852/11-105 (in press)
43. Scheuer C (1988) Ascomyceten auf Cyperaceen und Juncaceen im Ostalpen-raum. Biblioth Mycol 123:1-124
44. Scheuer C (1991) Taphrophila (Dothideales: Tubeufiaceae) and two species of Tubeufia with dark setae. Mycol Res 95:811-816
45. Schoch CL, Crous PW, Groenewald JZ et al (2009) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1-15
46. Seifert KA, Morgan-Jones G, Gams W, Kendrick B (2011) The Genera of Hyphomycetes. CBS Biodiversity Series 9:1-997
47. Shearer C (1987) Helicoma chlamydosporum, a new hyphomycete from submerged wood in Panama. Mycologia 79:468-472
48. Sivanesan A (1984) The Bitunicate Ascomycetes and their Anamorphs Strauss and Cramer Vaduz, Germany
49. Sivanesan A, Panwar K, Kaur SJ (1976) Thaxteriellopsis lignicola, gen et sp nov, a new Loculoascomycete from India. Kavaka 4:39-42
50. Sivanesan A, Rajak RC, Gupta RC (1988) Thaxterina, a new tubeufiaceous genus with multispored asci from India. Trans Brit Mycol Soc 90:662-665
51. Spegazzini CL (1924) Algunos honguitos portoriqueños. Bol Acad Nac Ci 26:335-368
52. Subramanian C, Sekar G (1982) Thaxteriellopsis lignicola and its Moorella anamorph. Proc Plant Sci 91:1-7
53. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (* and Others Methods), version 4.0b10 edition. Sinauer Associates, Sunderland, Massachusetts
54. Sydow H (1939) Fungi Venezuelani. Annales Mycol 28:29-224
55. Tsui CKM, Berbee ML (2006) Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mole Phyl Evol 39:587-597
56. Tsui CKM, Sivichai S, Berbee ML (2006) Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia 98:94-104 (Pubitemid 43937671)
57. Tsui CKM, Sivichai S, Rossman AY, Berbee ML (2007) Tubeufia asiana, the teleomorph of Aquaphila albicans in the Tubeufiaceae, Pleosporales, based on cultural and molecular data. Mycologia 99:884-894 (Pubitemid 351198228)
58. Untereiner WA, Straus NA, Malloch D (1995) A molecularmorphotaxonomic approach to the systematics of the Herpotrichiellaceae and allied black yeasts. Mycol Res 99:897-913
59. Vasilyeva LN, Stephenson SL (2010) The problems of traditional and phylogenetic taxonomy of fungi. Mycosphere 1:45-51
60. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4238-4246 (Pubitemid 20236711)
61. Walker J (1980) Gaeumannomyces, Linocarpon, Ophiobolus and several other genera of scolecospored ascomycetes and phialophora conidial states, with a note on hyphopodia. Mycotaxon 11:1-129
62. White T, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18:315-322
63. Zhang Y, Crous PW, Schoch CL, Hyde KD (2012) Pleosporales. Fungal Divers 52:1-221; doi: 10.1007/s13225-011-0117-x (in press)
64. Zhao G, Liu X, Wu W (2007) Helicosporous hyphomycetes from China. Fungal Divers 26:313-524