Multi-locus phylogeny of Pleosporales: A taxonomic, ecological and evolutionary re-evaluation

Studies in Mycology

Volumn 64, Issue , 2009, Pages 85-102

  Zhang, Y ^a   Schoch, C L ^b   Fournier, J ^c   Crous, P W ^d   de Gruyter, J ^d,e   Woudenberg, J H C ^d   Hirayama, K ^f   Tanaka, K ^f   Pointing, S B ^a   Spatafora, J W ^g   Hyde, K D ^h,i  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c Las Muros   (France)

^d CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^e WAGENINGEN UNIVERSITY   (Netherlands)

^f HIROSAKI UNIVERSITY   (Japan)

^g OREGON STATE UNIVERSITY   (United States)

^h MAE FAH LUANG UNIVERSITY   (Thailand)

ⁱ RESEARCH INSTITUTE OF FORESTRY   (China)

Author keywords

Environmental habit; Evolution; Molecular phylogeny; Nutritional mode; Taxonomy

Indexed keywords

EID: 77954794122     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: 10.3114/sim.2009.64.04     Document Type: Article

References (151)

1. Abler SW (2003). Ecology and Taxonomy of Leptosphaerulina spp. associated with Turfgrasses in the United States (Master's thesis). Blacksburg, Virginia: Virginia Polytechnic Institute and State University.
2. Arx JA von (1971). Testudinaceae, a new family of Ascomycetes. Persoonia 6: 365-369.
3. Arx JA von (1974). The Genera of Fungi Sporulating in Pure Culture. Edn 2. Vaduz; J. Cramer.
4. Arx JA von, Müller E (1975). A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159.
5. Aveskamp MM, Gruyter J de, Crous PW (2008). Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance. Fungal Diversity 31: 1-18.
6. Barr ME (1979). A classification of Loculoascomycetes. Mycologia 71: 935-957.
7. Barr ME (1983). The ascomycete connection. Mycologia 75: 1-13.
8. Barr ME (1987a). New taxa and combinations in the loculoascomycetes. Mycotaxon 29: 501-505.
9. Barr ME (1987b). Prodromus to Class Loculoascomycetes. Published by the Author, Amherst, Massachusetts; University of Massachusetts, U.S.A.
10. Barr ME (1990). North American flora, Melanommatales (Loculoascomycetes). Series II, part 13: 1-129.
11. Barr ME (1992). Additions to and notes on the Phaeosphaeriaceae (Pleosporales, Loculoascomycetes). Mycotaxon 43: 371-400.
12. Barr ME (2000). Notes on coprophilous bitunicate Ascomycetes. Mycotaxon 76: 105-112.
13. Barr ME (2001). Montagnulaceae, a new family in the Pleosporales, and lectotypification of Didymosphaerella. Mycotaxon 77: 193-200.
14. Berbee ML (2001). The phylogeny of plant and animal pathogens in the Ascomycota. Physiological and Molecular Plant Pathology 59: 165-187.
15. Bitzer J, Læssøe T, Fournier J, Kummer V, Decock C, Tichy H-V, Piepenbring M, Peršoh D, Stadler M (2008). Affinities of Phylacia and the daldinoid Xylariaceae, inferred from chemotypes of cultures and ribosomal DNA sequences. Mycological Research 112: 251-270.
16. Boehm EW, Schoch CL, Spatafora JW (2009). On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes. Mycological Research 113: 461-479.
17. Boerema GH (1997). Contributions towards a monograph of Phoma (coelomycetes) - V. Subdivision of the genus in sections. Mycotaxon 64: 321-333.
18. Booth C (1968). Didymosphaeria igniaria sp. nov., the perfect state of Periconia igniaria. Transactions of the British Mycological Society 51: 803-805.
19. Bose SK (1961). Studies on Massarina Sacc. and related genera. Phytopathologische Zeitschrift 41: 151-213.
20. Cai L, Jeewon R, Hyde KD (2006). Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology. Mycological Research 110: 137-150.
21. Cain RF (1972). Evolution of the fungi. Mycologia 64: 1-14.
22. Calatayud V, Sanz MJ, Aptroot A (2001). Lichenopyrenis galligena (Pleomassariaceae), a new genus of gall-forming lichenicolous fungi on Leptochidium. Mycological Research 105: 634-637.
23. Câmara MPS, Palm ME, Berkum P van, O'Neill NR (2002). Molecular phylogeny of Leptosphaeria and Phaeosphaeria. Mycologia 94: 630-640.
24. Câmara MPS, Palm ME, Berkum P van, Stewart EL (2001). Systematics of Paraphaeosphaeria: a molecular and morphological approach. Mycological Research 105: 41-56.
25. Cannon PF, Kirk PM (2007). Fungal Families of the World. CAB. International, Wallingford, Oxfordshire, U.K.
26. Carson ML (2005). Yield loss potential of Phaeospharia leaf spot of maize caused by Phaeosphaeria maydis in the United States. Plant Disease 89: 986-988.
27. Chesters CGC (1938). Studies on British pyrenomycetes II. A comparative study of Melanomma pulvis-pyrius (Pers.) Fuckel, Melanomma fuscidulum Sacc. and Thyridaria rubro-notata (B. & Br.) Sacc. Transactions of British Mycological Society 22: 116-150.
28. Chilvers MI, Rogers JD, Dugan FM, Stewart JE, Chen W, Peever TL (2009). Didymella pisi sp. nov., the teleomorph of Ascochyta pisi. Mycological Research 113: 391-400.
29. Cooke RC (1977). The Biology of Symbiotic Fungi. Chichester & New York: John Wiley.
30. Cooke RC, Whipps JM (1986). Saprotrophy, stress and symbiosis. In: Evolutionary Biology of the Fungi. (Rayner ADM, Brasier CM & Moore D, eds). Cambridge, U.K.: Cambridge University Press: 137-148.
31. Crivelli PG. (1983). Über die heterogene Ascomycetengattung Pleospora Rabh.: Vorschlag für eine Aufteilung. Abh. Eidgenössischen Technischen Hochschule Zürich 7318: 1-213.
32. Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G (2004). MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology 50: 19-22.
33. Crous PW, Groenewald JZ, Wingfield MJ, Aptroot A (2003). The value of ascospore septation in separating Mycosphaerella from Sphaerulina in the Dothideales: a Saccardoan myth? Sydowia 55: 136-152.
34. Crous PW, Schoch CL, Hyde KD, Wood AR, Gueidan C, et al. (2009a). Phylogenetic lineages in the Capnodiales. Studies in Mycology 64: 17-47.
35. Crous PW, Verkleij GJM, Groenewald JZ, Samson RA (eds). (2009b). Fungal Biodiversity. CBS Laboratory Manual Series. Centraalbureau voor Schimmelcultures, Utrecht, Netherlands.
36. Dong JW, Chen WD, Crane JL (1998). Phylogenetic studies of the Leptosphaeriaceae, Pleosporaceae and some other Loculoascomycetes based on nuclear ribosomal DNA sequences. Mycological Research 102: 151-156.
37. Eriksson O, Yue J-Z (1986). Bertiella (Sacc.) Sacc. & Sydow, a synonym of Massarina Sacc. Mycotaxon 27: 247-253.
38. Eriksson OE (1967). On graminicolous pyrenomycetes from Fennoscandia II. Phragmosporous and scolecosporous species. Arkiv för Botanik 6: 381-440.
39. Eriksson OE (1981). The families of bitunicate ascomycetes. Opera Botanica 60: 1-220.
40. Eriksson OE (edn.) (2006). Outline of Ascomycota - 2006. Myconet 12: 1-82.
41. Eriksson OE, Hawksworth DL (1990). Outline of the Ascomycetes-1989. Systema Ascomycetum 8: 119-318.
42. Farr DF, Bills GF, Chamuris GP, Rossman AY (1989) Fungi on Plants and Plant Products in the United States. APS Press, St. Paul, MN, U.S.A.
43. Fukuhara M (2002). Three Phaeosphaeria species and Paraphaeosphaeria michotii isolated from Phragmites leaves in Osaka, Japan. Mycoscience 43: 375-382.
44. Goloboff P, Farris S, Nixon K (2008). TNT, a free program for phylogenetic analysis. Cladistics. 24: 1-13.
45. Graham JH, Luttrell ES (1961). Species of Leptosphaerulina on forage plants. Phytopathology 51: 680-693.
46. nd edn. Aylesbury: L. Hill.
47. Gruyter J de, Aveskamp MM, Woudenberg JHC, Groenewald JZ, Verkley GJM, Crous PW (2009). Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex. Mycological Research 113: 508-519.
48. Hall T (2004). Bioedit v. 7.0.1. Isis Pharmaceuticals.
49. Hane JK, Lowe RGT, Solomon PS, Tan K-C, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SFF, McDonald BA, Oliver RP (2007). Dothideomycete-Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum. The Plant Cell 19: 3347-3368.
50. Hawksworth DL (1979). Ascospore sculpturing and generic concepts in the Testudinaceae (syn. Zopfiaceae). Canadian Journal of Botany 57: 91-99.
51. Hawksworth DL (1987). The evolution and adaptation of sexual reproductive structures in the Ascomycotina. In: Evolutionary Biology of the Fungi (Rayner ADM, Brasiel CM & Moore D, eds). Cambridge Univ. Press, Cambridge 179-189.
52. Hawksworth DL, Chea CY, Sheridan JE (1979). Bimuria novae-zelandiae gen. et sp. nov., a remarkable ascomycete isolated from a New Zealand barley field. New Zealand Journal of Botany 17: 267-273.
53. Hawksworth DL, Lagreca S (2007). New bottles for old wine: fruit body types, phylogeny and classification. Mycological Research 111: 999-1000.
54. Heath MC (1987). Evolution of parasitism in the fungi. In: Evolutionary Biology of the Fungi (Rayner ADM, Brasier CM & Moore D, eds). Cambridge University Press, Cambridge 149-160.
55. Hedjaroude A (1968). Études taxonomiques sur les Phaeosphaeria Miyake et leurs formes voisines (ascomycètes). Sydowia 22: 57-107.
56. Holm L (1957). Études taxonomiques sur les Pléosporacées. Symbolae Botanicae Upsalienses 14: 1-188.
57. Holm L, Holm K (1988). Studies in the Lophiostomataceae with emphasis on the Swedish species. Symbolae Botanicae Upsalienses 28: 1-50.
58. Huang WY, Cai YZ, Hyde KD, Corke H, Sun M (2008). Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants. Fungal Diversity 33: 61-75.
59. Ingold CT (1971). Fungal Spores: Their Liberation and Dispersal. Oxford: Clarendon Press.
60. Jeewon R, Liew ECY, Hyde KD (2004). Phylogenetic evaluation of species nomenclature of Pestalatiopsis in relation to host association. Fungal Diversity 17: 39-55.
61. Katoh K, Asimenos G, Toh H (2009). Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology 537: 39-64.
62. Kauff F, Cox CJ, Lutzoni F (2007). WASABI: an automated sequence processing system for multigene phylogenies. Systematic Biology 56: 523-531.
63. Kauff F, Lutzoni F (2002). Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution 25: 138-56.
64. Khashnobish A, Shearer CA (1996). Reexamination of some Leptosphaeria and Phaeosphaeria species, Passeriniella obiones and Melanomma radicans. Mycological Research 100: 1341-1354.
65. th edn. CAB International, Wallingford, U.K.
66. th edn. CAB International., Wallingford, U.K.
67. Kodsueb R, Dhanasekaran V, Aptroot A, Lumyong S, McKenzie EHC, Hyde KD, Jeewon R (2006). The family Pleosporaceae: intergeneric relationships and phylogenetic perspectives based on sequence analyses of partial 28S rDNA. Mycologia 98: 571-583.
68. Kodsueb R, Jeewon R, Vijaykrishna D, Mckenzie EHC, Lumyong P, Lumyong S, Hyde KD (2008). Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Diversity 21: 105-130.
69. Kruys Å, Eriksson OE, Wedin M (2006). Phylogenetic relationships of coprophilous Pleosporales (Dothideomycetes, Ascomycota), and the classification of some bitunicate taxa of unknown position. Mycological Research 110: 527-536.
70. Kruys Å, Wedin M (2009). Phylogenetic relationships and an assessment of traditionally used taxonomic characters in the Sporormiaceae (Pleosporales, Dothideomycetes, Ascomycota), utilising multi-gene phylogenies Systematics and Biodiversity, Published online by Cambridge University Press.
71. Leuchtmann A (1984). Über Phaeosphaeria Miyake und andere bitunicate Ascomyceten mit mehrfach querseptierten Ascosporen. Sydowia 37: 45-194.
72. Leuchtmann A (1985). Kulturversuche mit einigen Arten der Gattung Lophiostoma Ces. & de Not. Sydowia 38: 158-170.
73. Lewis DH (1974). Micro-organisms and plants: the evolution of parasitism and mutualism. Symposia of the Society for General Microbiology 24: 367-392.
74. Liew ECY, Aptroot A, Hyde KD (2000). Phylogenetic significance of the pseudoparaphyses in Loculoascomycete Taxonomy. Molecular Phylogenetics and Evolution 16: 392-402.
75. Liew ECY, Aptroot A, Hyde KD (2002). An evaluation of the monophyly of Massarina based on ribosomal DNA sequences. Mycologia 94: 803-813.
76. Liu K, Raghavan S, Nelesen S, Linder CR, Warnow T (2009). Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees. Science. 324: 1561-1564.
77. Liu YJ, Whelen S, Hall BD (1999). Phylogenetic relationships among ascomycetes: evidence from an RNA Polymerase II subunit. Molecular Biology and Evolution 16: 1799-1808.
78. Lumbsch HT, Huhndorf SM (eds) (2007). Outline of Ascomycota - 2007. Myconet 13: 1-58.
79. Lumbsch HT, Lindemuth R (2001). Major lineages of Dothideomycetes (Ascomycota) inferred from SSU and LSU rDNA sequences. Mycological Research 105: 901-908.
80. Lumbsch HT, Schmitt I, Mangold A, Wedin M (2007). Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota). Mycological Research 111: 1133-1141.
81. Luttrell ES (1955). The Ascostromatic Ascomycetes. Mycologia 47: 511-532.
82. Luttrell ES (1973). Loculoascomycetes. In: The Fungi: an advanced treatise. (Ainsworth GC, Sparrow FK & Sussman AS, eds). Academic Press, New York: 135-219.
83. Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, et al. (2004). Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480.
84. Miller MA, Holder MT, Vos R; Midford PE, Liebowitz T, Chan L, Hoover P, Warnow T (2009) The CIPRES Portals. URL: www.webcitation.org/5imQlJeQa
85. Miyake I (1909). Studies on the parasitic fungi of rice in Japan. Botanical Magazine Tokyo. 23: 85-97.
86. Munk A (1956). On Metasphaeria coccodes (Karst.) Sacc. and other fungi probably related to Massarina Sacc. Massarinaceae n. fam. Friesia 5: 303-308.
87. Nagasawa E, Otani Y (1997). Some species of the bambusicolous ascomycetes from Japan I. Reports of the Tottori Mycological Institute (Japan) 15: 38-42.
88. Nitschke TRJ (1869). Grundlage eines Systems der Pyrenomyceten. Verhandlungen des Naturhistorischen Vereins der Preussischen Rheinlande, Westfalens und des Regierungsbezirks Osnabrück 26: 70-77.
89. Paavolainen L, Kurkela T, Hallaksela A-M, Hantula J (2000). Pleomassaria siparia is composed of two biological species, both of which occur in dead twigs of Betula pendula and B. pubescens. Mycologia 92: 253-258.
90. Parguey-Leduc A, Janex-Favre MC (1981). The Ascocarps of Ascohymenial Pyrenomycetes. In: Ascomycete systematics: The Luttrellian Concept (Reynolds DR, ed.). Springer-Verlag, New York 102-119.
91. Pedras MS, Chumala PB, Jin W, Islam MS, Hauck DW (2009). The phytopathogenic fungus Alternaria brassicicola: phytotoxin production and phytoalexin elicitation. Phytochemistry 70: 394-402.
92. Petrak F (1944). Über die Gattungen Chaetopyrena Pass., Sclerochaeta v. Höhn., Sclerochaetella v. Höhn., Vermiculariella Oud., Chaetosphaeronema Moesz und Pseudophoma v. Höhn. Annales Mycologici 42: 58-71.
93. Ramesh Ch (2003). Loculoascomycetes from India. In: Frontiers of Fungal Diversity in India. (Rao GP, Manoharachari C & Bhat DJ, eds). International Book Distributing Company, Lucknow, India: 457-479.
94. Rogerson CT (1970). Hypocrealean Fungi (Ascomycetes-Hypocreales). Mycologia. 62: 865-910.
95. Rouxel T, Balesdent MH (2005). The stem canker (blackleg) fungus, Leptosphaeria maculans, enters the genomic era. Molecular Plant Pathology 6:225-241.
96. Saccardo PA (1878). Fungi Italici autographice delineati a Prof. P.A. Saccardo. Patavii 1878. - Fascicoli V.-VIII. sistentes tab. 161-320. Michelia 1: 326-350.
97. Sánchez Márquez S, Bills GF, Zabalgogeazcoa I (2008). Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses. Fungal Diversity 33: 87-100.
98. Schmitt I, Lumbsch HT (2004). Molecular phylogeny of the Pertusariaceae supports secondary chemistry as an important systematic character set in lichen-forming ascomycetes. Molecular Phylogenetics and Evolution 33: 43-55.
99. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, et al. (2009a). A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1-15.
100. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006). A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98: 1041-1052.
101. Schoch CL, Sung GH, Lopez-Giraldez F, Townsend JP, Miadlikowska J, et al. (2009b). The Ascomycota Tree of Life: A Phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology 58: 224-239.
102. Schoch CL, Sung G-H, Volkmann-Kohlmeyer B, Kohlmeyer J, Spatafora JW (2007). Marine fungal lineages in the Hypocreomycetidae. Mycological Research 111: 154-162.
103. Shenoy BD, Jeewon R, Lam WH, Bhat DJ, Than PP, Taylor PWJ, Hyde KD (2007). Morpho-molecular characterisation and epityfication of Collectotrichum capsici (Glomerellaceae, Sordariomycetes), the causative agent of anthracnose in chilli. Fungal Diversity 27: 197-211.
104. Shoemaker RA (1976). Canadian and some extralimital Ophiobolus species. Canadian Journal of Botany 54: 2365-2404.
105. Shoemaker RA (1984a). Canadian and some extralimital Leptosphaeria species. Canadian Journal of Botany 62: 2688-2729.
106. Shoemaker RA (1984b). Canadian and some extralimital Nodulosphaeria and Entodesmium species. Canadian Journal of Botany 62: 2730-2753.
107. Shoemaker RA, Babcock CE (1985). Canadian and some extralimital Paraphaeosphaeria species. Canadian Journal of Botany 63: 1284-1291.
108. Shoemaker RA, Babcock CE (1989). Phaeosphaeria. Canadian Journal of Botany 67: 1500-1599.
109. Shoemaker RA, Leclair PM (1975). Type studies of Massaria from the Wehmeyer Collection. Canadian Journal of Botany 53: 1568-1598.
110. Simmons EG (1986). Alternaria themes and variations (22-26). Mycotaxon 25: 287-308.
111. Simmons EG (1989). Perfect states of Stemphylium. III. Memoirs of the New York Botanical Garden 49: 305-307.
112. Simmons EG (1990). Embellisia and related teleomorphs. Mycotaxon 38: 251-265.
113. Simmons EG (2007). Alternaria - An Identification Manual. CBS Biodiversity Series 6: 1-775.
114. Sivanesan A (1984). The Bitunicate Ascomycetes and their Anamorphs. Vaduz, Lichtenstein; J. Cramer.
115. Solomon PS, Lowe RGT, Tan K-C, Waters ODC, Oliver RP (2006). Stagonospora nodorum: cause of stagonospora nodorum blotch of wheat. Molecular Plant Pathology 7: 147-156.
116. Stadler M, Fournier J (2006). Pigment chemistry, taxonomy and phylogeny of the Hypoxyloideae (Xylariaceae). Revista Iberoamericana de Micologia 23: 160-170.
117. Stadler M, Fournier J, Quang DN, Akulov AY (2007). Metabolomic studies on the chemical ecology of the Xylariaceae (Ascomycota). Natural Products Communications 3: 287-304.
118. Stadler M, Ju Y-M, Rogers JD (2004). Chemotaxonomy of Entonaema, Rhopalostroma and other Xylariaceae. Mycological Research 108: 239-256.
119. Stadler M, Wollweber H, Mühlbauer A, Henkel T, Asakawa Y, Hashimoto T, Rogers JD, Ju YM, Wetzstein HG, Tichy HV (2001). Secondary metabolite profiles, genetic fingerprints and taxonomy of Daldinia and allies. Mycotaxon 77: 379-429.
120. Stamatakis A (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
121. Stamatakis A, Hoover P, Rougemont J (2008). A Rapid Bootstrap Algorithm for the RAxML Web Servers. Systematic Biology 57: 758-771.
122. Stukenbrock EH, Banke S, McDonald BA (2006). Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum. Molecular Ecology 15: 2895-2904.
123. Suetrong S, Schoch CL, Spatafora JW, Kohlmeyer J, Volkmann-Kohlmeyer B, et al. (2009). Molecular systematics of the marine Dothideomycetes. Studies in Mycology 64: 155-173.
124. Sung GH, Poinar GO, Spatafora JW (2008). The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal-arthropod symbioses. Molecular Phylogenetics and Evolution 49: 495-502.
125. Tanaka K, Harada Y (2004). Bambusicolous fungi in Japan (1): four Phaeosphaeria species. Mycoscience 45: 377-382.
126. Tanaka K, Harada Y (2005). Bambusicolous fungi in Japan (6): Katumotoa, a new genus of phaeosphaeriaceous ascomycetes. Mycoscience 46: 313-318.
127. Tanaka K, Harada Y, Barr ME (2005). Bambusicolous fungi in Japan (3): a new combination, Kalmusia scabrispora. Mycoscience 46: 110-113.
128. Tanaka K, Hosoya T (2008). Lophiostoma sagittiforme sp. nov., a new ascomycete (Pleosporales, Dothideomycetes) from Island Yakushima in Japan. Sydowia 60: 131-145.
129. Tao G, Liu ZY, Hyde KD, Lui XZ, Yu ZN (2008). Whole rDNA analysis reveals novel and endophytic fungi in Bletilla ochracea (Orchidaceae). Fungal Diversity 33: 101-122.
130. Theissen F, Sydow H (1917). Die Gattung Parodiella. Annales Mycologici 15: 125-142.
131. Tsui CKM, Hyde KD, Hodgkiss IJ (2000). Biodiversity of fungi on submerged wood in Hong Kong streams. Aquatic Microbial Ecology 21: 289-298.
132. Ueng PP, Dai Q, Cui KR, Czembor PC, Cunfer BM, Tsang H, Arseniuk E, Bergstrom GC (2003). Sequence diversity of mating-type genes in Phaeosphaeria avenaria. Current Genetics 43: 121-30.
133. Vergnes DM, Zhanarbekova A, Renard M-E, Duveiller E, Maraite H (2006). Mating types of Phaeosphaeria nodorum (anamorph Stagonospora nodorum) from Central Asia. Journal of Phytopathology 154: 317-319.
134. Verkley GJM, da Silva M, Wicklow DT, Crous PW (2004). Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species. Studies in Mycology 50: 323-335.
135. Vilgalys R, Hester M (1990). Rapid genetic identification and mapping enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
136. Voigt K, Cozijnsen AJ, Kroymann R, Poggeler S, Howlett BJ (2005). Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by mating type (MAT1-2), actin, and beta-tubulin sequences. Molecular Phylogenetics and Evolution 37: 541-557.
137. Wang HK, Aptroot A, Crous PW, Hyde KD, Jeewon R (2007). The polyphyletic nature of Pleosporales: an example from Massariosphaeria based on rDNA and RBP2 gene phylogenies. Mycological Research 111: 1268-1276.
138. Webster J (1957). Pleospora straminis, P. rubelloides and P. rubicunda: three fungi causing purple-staining of decaying tissues. Transactions of the British Mycological Society 40: 177-186.
139. Wedin M, Wiklund E, Crewe A, Döring H, Ekman S, Schmitt I, Nyberg A, Schmitt I, Lumbsch HT (2005). Phylogenetic relationships of Lecanoromycetes (Ascomycota) as revealed by analyses of mtSSU and nLSU rDNA sequence data. Mycological Research 109: 159-172.
140. Wehmeyer LE (1961). A world monograph of the genus Pleospora and its segregates University of Michigan Press, Ann Arbor, Michigan.
141. Wehmeyer LE (1975). The pyrenomycetous fungi. Mycologia Memoir 6: 1-250.
142. Wernersson R, Pedersen AG (2003). RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Research 31: 3537-3539.
143. Wetzel HC III, Hulbert SH, Tisserat NA (1999). Molecular evidence for the presence of Ophiosphaerella narmari n. comb., a cause of spring dead spot of Bermuda grass, in North America. Mycological Research 103: 981-989.
144. rd edn. The American Phytopathological Society, St. Paul, MN, U.S.A.
145. White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocol: a guide to methods and applications (Innis MA, Gelfand DH, Sninsky JS, White TJ, eds). San Diego: Academic Press, San Diego 315-322.
146. Woudenberg JHC, Aveskamp MM, Gruyter J de, Spiers AG, Crous PW (2009). Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia 22: 56-62.
147. Yuan Z-Q, Zhao Z-Y (1994). Studies on lophiostomataceous fungi from Xinjiang, China. Sydowia 46: 162-184.
148. Zhang Y, Fournier J, Crous PW, Pointing SB, Hyde KD (2009a). Phylogenetic and morphological assessment of two new species of Amniculicola and their allies (Pleosporales). Persoonia 23: 48-54.
149. Zhang Y, Fournier J, Pointing SB, Hyde KD (2008a). Are Melanomma pulvis-pyrius and Trematosphaeria pertusa congeneric? Fungal Diversity 33: 47-60.
150. Zhang Y, Jeewon R, Fournier J, Hyde KD (2008b). Multi-gene phylogeny and morphotaxonomy of Amniculicola lignicola: a novel freshwater fungus from France and its relationships to the Pleosporales. Mycological Research 112: 1186-1194.
151. Zhang Y, Wang HK, Fournier J, Crous PW, Pointing SB, Hyde KD (2009b). Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225-251.