Sequence data reveals phylogenetic affinities of Acrocalymma aquatica sp. nov., Aquasubmersa mircensis gen. et sp. nov. and Clohesyomyces aquaticus (freshwater coelomycetes)

Cryptogamie, Mycologie

Volumn 33, Issue 3, 2012, Pages 333-346

  Zhang, Huang ^a   Hyde, Kevin D ^b   McKenzie, Eric H C ^c   Bahkali, Ali H ^d   Zhou, Dequn ^a  

^a KUNMING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b MAE FAH LUANG UNIVERSITY   (Thailand)

^c LANDCARE RESEARCH   (New Zealand)

^d KING SAUD UNIVERSITY   (Saudi Arabia)

Author keywords

Anamorph; Appendage; DNA; Nomenclature; Sheath; Submerged; Teleomorph; Thailand

Indexed keywords

EID: 84874882791     PISSN: 01811584     EISSN: None     Source Type: Journal    
DOI: 10.7872/crym.v33.iss3.2012.333     Document Type: Article

References (50)

1. ABDEL-AZIZ F. A. & ABDEL-WAHAB M. A., 2010 - Lolia aquatica gen. et sp. nov. Lindgomycetaceae, Pleosporales), a new coelomycete from freshwater habitats in Egypt. Mycotaxon 114:33-42.
2. ALCORN J. L. & IRWIN J. A. G., 1987 - Acrocalymma medicaginis gen. et sp. nov. causing root and crown rot of Medicago sativa in Australia. Transactions of the British Mycological Society 88:163-167.
3. BOONMEE S., KOKO T. W., CHUKEATIROTE E., HYDE K. D., CHEN H., CAI L., MCKENZIE E. H. C., JONES E. B. G., KODSUEB R. & HASSAN B. A., 2012 - Two new Kirschsteiniothelia species with a Dendryphiopsis anamorph cluster in Kirschsteiniotheliaceae fam. nov. Mycologia 104(3):698-714.
4. BOONMEE S., ZHANG Y., CHOMNUNTI P., CHUKEATIROTE E., TSUI C. K. M., BAHKALI A. H. & HYDE K. D., 2011 - Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Diversity 51:63-102.
5. CAI L., JI K. F. & HYDE K. D., 2006 - Variation between freshwater and terrestrial fungal communities on decaying bamboo culms. Antonie van Leeuwenhoek 89:293-301.
6. CAI L., ZHANG K. Q., MCKENZIE E. H. C. & HYDE K. D., 2003 - Freshwater fungi from bamboo and wood submerged in the Liput River in the Philippines. Fungal Diversity 13:1-12. (Pubitemid 39081303)
7. CHOMNUNTI P., SCHOCH C. L., AGUIRRE-HUDSON B., KOKO T. W., HONGSANAN S., JONES E. B. G., KODSUEB R., PHOOKAMSAK R., CHUKEATIROTE E., BAHKALI A. H. & HYDE K. D., 2011 - Capnodiaceae. Fungal Diversity 51(1):103-134.
8. CROUS P. W., 2009 - Taxonomy and phylogeny of the genus Mycosphaerella and its anamorphs. Fungal Diversity 38:1-24.
9. DYKO B. & SUTTON B., 1978 - Two new genera of water-borne coelomycetes from submerged leaf litter. Nova Hedwigia 29:167-178.
10. HALL T., 1999 - BioEdit computer program, version 7.0.9. (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).
11. HAWKSWORTH D. L., CROUS P. W., REDHEAD S. A., REYNOLDS D. R., SAMSON R. A., SEIFERT K. A., TAYLOR J. W. & WINGFIELD M. J., 2011 - The Amsterdam declaration on fungal nomenclature. IMA Fungus 2:105-112.
12. HAWKSWORTH D. L., 2012 - Managing and coping with names of pleomorphic fungi in a period of transitionl, 2. Mycosphere 3(2):143-155.
13. HILLIS D. M. & BULL J. J., 1993 - An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42:182-192.
14. HO W. H., HYDE K. D. & HODGKISS I. J., 2001 - Fungal communities on submerged wood from streams in Brunei, Hong Kong, and Malaysia. Mycological Research 105:1492-1501. (Pubitemid 34134588)
15. HO W. H., YANNA, HYDE K. D. & HODGKISS J. I., 2002 - Seasonality and sequential occurrence of fungi on wood submerged in Tai Po Kau Forest Stream, Hong Kong. Fungal Diversity 10:21-43. (Pubitemid 44844321)
16. HYDE K. D., 1993 - Tropical Australian freshwater fungi. VI. Tiarosporella paludosa and Clohesymyces aquaticus gen. et sp. nov. (Coelomycetes). Australian Systematic Botany 6:169-173.
17. HYDE K. D., 2007 - Saprobic microfungi. In: Jones E. B. G., Hyde K. D. and Vikineswary S. (eds), Malaysia freshwater fungi. Mushroom Research Centre, University of Malaya and Ministry of Natural Resources and Environment, Malaysia, pp. 141-162.
18. HYDE K. D., MCKENZIE E. H. C. & KOKO T. W., 2011 - Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2010. Mycosphere 2:1-88.
19. JEEWON R., CAI L., LIEW E. C. Y., ZHANG K. Q. & HYDE K. D., 2003 - Dyrithiopsis lakefuxianensis gen. et sp nov from Fuxian Lake, Yunnan, China, and notes on the taxonomic confusion surrounding Dyrithium. Mycologia 95:911-920. (Pubitemid 37489069)
20. JONES E. B. G., SAKAYAROJ J., SUETRONG S., SOMRITHIPOL S. & PANG K., 2009 - Classification of marine Ascomycota, anamorphic taxa and Basidiomycota. Fungal Diversity 35:1-187.
21. KURNIAWATI E., ZHANG H., CHUKEATIROTE E., SULISTYOWATI L., MOSLEM M. A. & HYDE K. D., 2010 - Diversity of freshwater ascomycetes in freshwater bodies at Amphoe Mae Chan, Chiang Rai. Cryptogamie Mycologie 31:323-331.
22. LAZZIZERA C, FRISULLO S., ALVES A., LPOES J. & PHILLIPS A. J. L., 2008 - Phytogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum sp. nov. Fungal Diversity 31:63-71.
23. LETOURNEAU A., SEENA S., MARVANOVA L. & BAERLOCHER F., 2010 - Potential use of barcoding to identify aquatic hyphomycetes. Fungal Diversity 40:51-64.
24. LIU J. K., PHOOKAMSAK R., JONES E. B. G., ZHANG Y., KOKO T. W., HU H. L., BOONMEE S., DOILOM M., CHUKEATIROTE E., BAHKALI A. H., WANG Y. & HYDE K. D., 2011 - Astrosphaeriella is polyphyletic with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Diversity 51:135-154.
25. LUO J., YIN J., CAI L., ZHANG K. Q. & HYDE K. D., 2004 - Freshwater fungi in Lake Dianchi, a heavily polluted lake in Yunnan, China. Fungal Diversity 16:93-112. (Pubitemid 39538740)
26. MONCHY S., SANCIU G., JOBARD M., RASCONI S., GERPHAGNON M., CHABE M., CIAN A., MELONI D., NIQUIL N., CHRISTAKI U., VISCOGLIOSI E. & SIME-NGANDO T., 2011 - Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing. Environmental Microbiology 13:1433-1453.
27. PAGE R. D. M., 1996 - Tree View: an application to display phylogenetic trees on personal computers. Computer applications in the biosciences. 12:357-358.
28. PINNOI A., LUMYONG S., HYDE K. D. & JONES E. B. G., 2006 - Biodiversity of fungi on the palm Eleiodoxa conferta in Sirindhorn peat swamp forest, Narathiwat, Thailand. Fungal Diversity 22:205-218. (Pubitemid 44594821)
29. RAJA H. A., SCHMIT J. & SHEARER C. A., 2009 - Latitudinal, habitat and substrate distribution patterns of freshwater ascomycetes in the Florida Peninsula. Biodiversity and Conservation 18:419-455.
30. RAJA H. A. & SHEARER C. A., 2008 - Freshwater ascomycetes: new and noteworthy species from aquatic habitats in Florida. Mycologia 100:467-489.
31. ROSIQUE-GIL E., GONZALEZ M. C. & CIFUENTES J., 2008 - New records of three freshwater ascomycetes from an urban lagoon of Tabasco, Mexico. Mycotaxon 105:249-256.
32. SEENA S., PASCOAL C., MARVANOVA L. & CASSIO F., 2010 - DNA barcoding of fungi: a case study using ITS sequences for identifying aquatic hyphomycete species. Fungal Diversity 44:77-87.
33. SHEARER C. A., LANGSAM D. M. & LONGCORE J. E., 2004 - Fungi in freshwater habitats. In: Biodiversity of fungi: inventory and monitoring methods. (eds Mueller GM, Bills GF and Foster MS). Elsevier, Amsterdam, 513-531.
34. SHEARER C. A., RAJA H. A., MILLER A. N., NELSON P., TANAKA K., HIRAYAMA K., MARVANOVA L., HYDE K. D. & ZHANG Y., 2009 - The molecular phylogeny of freshwater Dothideomycetes. Studies in Mycology 64:145.
35. SHENOY B. D., JEEWON R. & HYDE K. D., 2007 - Impact of DNA sequence-data on the taxonomy of anamorphic fungi. Fungal Diversity 26:1-54.
36. SHENOY B. D., JEEWON R., WANG H. K., AMANDEEP K., HO W. H., BHAT D. J., CROUS P. W. & HYDE K. D., 2010 - Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides. Fungal Diversity 44:161-169.
37. SHOEMAKER R. A., BABCOCK C. E. & IRWIN J. A. G., 1991 - Massarina walked n. sp., the teleomorph of Acrocalymma medicaginis from Medicago sativa contrasted with Leptosphaeria pratensis, L. weimeri n. sp., and L. viridella. Canadian Journal of Botany 69:569-573.
38. SIMONIS J. L., RAJA H. A. & SHEARER C. A., 2008 - Extracellular enzymes and soft rot decay: Are ascomycetes important degraders in fresh water? Fungal Diversity 31:135-146.
39. SRIDHAR K. R., KARAMCHAND K. S. & HYDE K. D., 2010 - Wood-inhabiting filamentous fungi in 12 high-altitude streams of the Western Ghats by damp incubation and bubble chamber incubation. Mycoscience 51:104-115.
40. SUETRONG S., SCHOCH C. L., SPATAFORA J. W., KOHLMEYER J., VOLKMANN-KOHLMEYER B., SAKAYAROJ J., PHONGPAICHIT S., TANAKA K., HIRAYAMA K. & JONES E. B. G., 2009 - Molecular systematics of the marine Dothideomycetes. Studies in Mycology 64:155-173.
41. SUTTON B. C. & MARASAS W. F. O., 1976 - Observations on Neottiosporina and Tiarosporella. Transactions of the British Mycological Society 67:69-76.
42. *: Phylogenetic Analysis Using Parsimony (and other methods). Version 4bl0. Sinauer Associates, Sunderland, USA.
43. TSUI C. K. M., HYDE K. D. & HODGKISS I. J., 2003 - Methods for investigating the biodiversity and distribution of freshwater ascomycetes and anamorphic fungi on submerged wood. In: Freshwater Mycology (eds Tsui CKM and D. HK). Fungal Diversity Research Series 10, Hong Kong, pp. 195-209.
44. VIJAYKRISHNA D., JEEWON R. & HYDE K. D., 2006 - Molecular taxonomy, origins and evolution of freshwater ascomycetes. Fungal Diversity 23:351-390. (Pubitemid 46155120)
45. VORONIN L. V., 2008 - Zoosporic fungi in freshwater ecosystems. Inland Water Biology 1:341-346.
46. WIJAYAWARDENE D. N. N., MCKENZIE E. H. C. & HYDE K. D., 2012 - Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2011. Mycosphere 3:157-228.
47. ZHANG Y., CROUS P. W., SCHOCH C. L., BAHKALI A. H., GUO L. D. & HYDE K. D., 2011 - A molecular, morphological and ecological re-appraisal of Venturiales-a new order of Dothideomycetes. Fungal Diversity 51:249-277.
48. ZHANG Y., CROUS P. W., SCHOCH C. L. & HYDE K. D., 2012 - Pleosporales. Fungal Diversity 53:1-221.
49. ZHANG H., JONES G. E. B., ZHOU D. Q., BAHKALI A. H. & HYDE K. D., 2011 - Checklist of freshwater fungi in Thailand. Cryptogamie, Mycologie 32:199-217.
50. ZHANG Y., SCHOCH C. L., FOURNIER J., CROUS P. W., DE GRUYTER J., WOUDENBERG J. H. C., HIRAYAMA K., TANAKA K., POINTING S. B. & SPATAFORA J. W., 2009 - Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary reevaluation. Studies in Mycology 64:85-102.