Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides

Fungal Diversity

Volumn 44, Issue , 2010, Pages 161-169

  Shenoy, Belle Damodara ^a   Jeewon, Rajesh ^b   Wang, Hongkai ^c   Amandeep, Kaur ^a   Ho, Wellcome H ^d   Bhat, Darbhe Jayarama ^e   Crous, Pedro W ^f   Hyde, Kevin D ^g,h  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b UNIVERSITY OF MAURITIUS   (Mauritius)

^c ZHEJIANG UNIVERSITY   (China)

^d Ministry for Primary Industries   (New Zealand)

^e GOA UNIVERSITY   (India)

^f CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^g MAE FAH LUANG UNIVERSITY   (Thailand)

^h KING SAUD UNIVERSITY   (Saudi Arabia)

Author keywords

Ascomycetes; Asexual fungi; Hyphomycetes; Molecular phylogeny; Taxonomy

Indexed keywords

ASCOMYCOTA; BOTRYOSPHAERIA; CHAETOSPHAERIACEAE; CHAETOSPHAERIALES; CONIOCHAETALES; DIAPORTHALES; DIPLOCOCCIUM; DOTHIDEOMYCETES; FUNGI; FUNGI IMPERFECTI; HELOTIALES; HYPHOMYCETES; LEOTIOMYCETES; LEPTOSPHAERIA; PLEOSPORALES; POROSPHAERELLA; SORDARIOMYCETES; SPADICOIDES;

EID: 79955849573     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-010-0059-8     Document Type: Article

References (70)

1. Aveskamp MM, de Gruyter J, Crous PW (2008) Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance. Fungal Divers 31:1-18
2. Aveskamp MM, Verkley GJM, de Gruyter J, Murace MA, Perelló A, Woudenberg JHC, Groenewald JZ, Crous PW (2009) DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties. Mycologia 101:363-382
3. Aveskamp MM, de Gruyter J, Woudenberg JHC, Verkley GJM, Crous PW (2010) Highlights of the Didymellaceae: a polyphasic approach to characterise Phoma and related pleosporalean genera. Stud Mycol 65:1-60
4. Bhat DJ, Kendrick B (1993) Twenty-five new conidial fungi from the Western Ghats and the Andaman Islands (India). Mycotaxon 49:19-90
5. Bisby GR (1938) The fungi from Manitoba and Saskatchewan. NRCC Bull 20:1-189
6. Cai L, Jeewon R, Hyde KD (2005) Phylogenetic evaluation and taxonomic revision of Schizothecium based on ribosomal DNA and protein coding genes. Fungal Divers 19:1-21 (Pubitemid 41391635)
7. Cai L, Hyde KD, Taylor PWJ, Weir B, Waller J, Abang MM, Zhang JZ, Yang YL, Phoulivong S, Liu ZY, Prihastuti H, Shivas RG, McKenzie EHC, Johnston PR (2009) A polyphasic approach for studying Colletotrichum. Fungal Divers 39:183-204
8. Crous PW (2009) Taxonomy and phylogeny of the genus Mycosphaerella and its anamorphs. Fungal Divers 38:1-24
9. Crous PW, Groenewald JZE, Gams W (2003) Eyespot of cereals revisited: ITS phylogeny reveals new species relationships. Eur J Plant Pathol 109:841-850 (Pubitemid 37387910)
10. Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WFO, Phillips AJL, Alves A, Burgess T, Barber P, Groenewald JZ (2006) Phylogenetic lineages in the Botryosphaeriaceae. Stud Mycol 55:235-253 (Pubitemid 44304008)
11. Crous PW, Braun U, Wingfield MJ, Wood AR, Shin HD, Summerell BA, Alfenas AC, Cumagun CJ, Groenewald JZ (2009a) Phylogeny and taxonomy of obscure genera of microfungi. Persoonia 22:139-161
12. Crous PW, Summerell BA, Carnegie AJ, Wingfield MJ, Hunter GC, Burgess TI, Andjic V, Barber PA, Groenewald JZ (2009b) Unravelling Mycosphaerella: do you believe in genera? Persoonia 23:99-118
13. Ellis MB (1963) Dematiaceous Hyphomycetes. V. Mycol Pap 93:1-33
14. Ellis MB (1971a) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew
15. Ellis MB (1971b) Dematiaceous hyphomycetes. X. Mycol Pap 125:1-31
16. Ellis MB (1972) Dematiaceous hyphomycetes. XI. Mycol Pap 131:1-25
17. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
18. Fernández FA, Huhndorf SM (2004) Neotropical pyrenomycetes: Porosphaerella borinquensis sp. nov. and its Pseudobotrys terrestris anamorph. Fungal Divers 17:11-16 (Pubitemid 40102923)
19. Fernández FA, Huhndorf SM (2005) New species of Chaetosphaeria. Melanopsammella and Tainosphaeria gen. nov. from the Americas. Fungal Divers 18:15-57 (Pubitemid 40722170)
20. Fernández FA, Miller AN, Huhndorf SM, Lutzoni FM, Zoller S (2006) Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa. Mycologia 98:121-130 (Pubitemid 43937674)
21. Goh TK, Hyde KD (1996) Spadicoides cordanoides sp. nov., a new dematiaceous hyphomycetes from submerged wood in Australia, with a taxonomic review of the genus. Mycologia 88:1022-1031 (Pubitemid 27167440)
22. Goh TK, Hyde KD (1998) A synopsis of and a key to Diplococcium species, based on the literature, with a description of a new species. Fungal Divers 1:65-83 (Pubitemid 128628470)
23. Groenewald AM, Fullerton JZ, Abeln ECA, Carlier J, Zapater MF, Buddenhagen IW, Viljoen A, Crous PW (2008) Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana. Persoonia 20:19-37 (Pubitemid 351871410)
24. Grove WB (1885) New or noteworthy fungi II. J Bot Lond 23:167-168
25. Gryzenhout M, Myburg H, Wingfield BD, Wingfield MJ (2006) Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera. Mycologia 98:239-249 (Pubitemid 44076451)
26. Ho WH, Yann A, Hyde KD (2002) Two new species of Spadicoides from Brunei and Hong Kong. Mycologia 94:302-306 (Pubitemid 34763155)
27. Hollister EB (2008) Land use and land cover change: the effects of woody plant encroachment and prescribed fire on biodiversity and ecosystem carbon dynamics in a southern great plains mixed grass savanna. Ph.D. thesis submitted to Texas A & M University, USA
28. Huelsenbeck JP, Ronquist FR (2001) MRBAYES: Bayesian inference of phylogenetic trees. Biometrics 17:754-755 (Pubitemid 32851390)
29. Hughes SJ (1958) Revisiones Hyphomycetum aliquot cum appendice de nominibus rejiciendis. Can J Bot 36:727-836
30. Huhndorf SM, Fernández FA (2005) Teleomorph-anamorph connections: Chaetosphaeria raciborskii and related species, and their Craspedodidymum-like anamorphs. Fungal Divers 19:23-49 (Pubitemid 41391636)
31. Huhndorf SM, Miller AN, Fernández FA (2004) Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96:368-387 (Pubitemid 38600749)
32. Huhndorf SM, Greif M, Mugambi GK, Miller AN (2008) Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella. Mycologia 100:940-955
33. Hyde KD, Cai L, McKenzie EHC, Yang YL, Zhang JZ, Prihastuti H (2009) Colletotrichum: a catalogue of confusion. Fungal Divers 39:1-17
34. Jones EBG, Sakayaroj J, Suetrong S, Somrithipol S, Pang KL (2009) Classification of marine Ascomycota, anamorphic taxa and Basidiomycota. Fungal Divers 35:1-187
35. Katoh K, Kuma KI, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511-518 (Pubitemid 40360980)
36. Kodsueb R, Lumyong S, Ho WH, Hyde KD, McKenzie EHC, Jeewon R (2007) Morphological and molecular characterisation of Aquaticheirospora and phylognenetics of Massarinaceae (Pleosporales). Bot J Linn Soc 155:283-296 (Pubitemid 47547451)
37. Kumar S, Dudley J, Nei M, Tamura K (2008) MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9:299-306 (Pubitemid 351890826)
38. Kuthubutheen AJ, Nawawi A (1991) Two new species of Spadicoides from Malaysia. Mycol Res 95:163-168
39. Nemergut DR, Townsend AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN, Schmidt SK (2008) The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environ Microbiol 10:3093-3105
40. Nylander JAA (2004) MrModeltest v2.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
41. Phillips AJL, Alves A, Correia A, Luque J (2005) Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia 97:513-529 (Pubitemid 40938819)
42. Prabhugaonkar A, Bhat DJ (2009) Rattania setulifera, an undescribed endophytic hyphomycete on rattans from Western Ghats, India. Mycotaxon 108:217-222
43. Pratibha J, Bhat DJ (2005) Natarajania indica gen. et sp. nov., a dematiaceous hyphomycetes from the forests of Western Ghats, India. Kavaka 33:129-133
44. Réblová M (1999a) Studies in Chaetosphaeria sensu lato I. The genera Chaetosphaerella and Tengiomyces gen. nov. of the Helminthosphaeriaceae. Mycotaxon 70:387-420 (Pubitemid 129327083)
45. Réblová M (1999b) Studies in Chaetosphaeria sensu lato III. Umbrinosphaeria gen. nov. and Miyoshiella with Sporidesmium anamorphs. Mycotaxon 71:13-43 (Pubitemid 129327927)
46. Réblová M (2006) Molecular systematics of Ceratostomella sensu lato and morphologically similar fungi. Mycologia 98:68-93 (Pubitemid 43937670)
47. Réblová M, Winka K (2001) Generic concepts and correlations in ascomycetes based on molecular and morphological data: Lecythothecium duriligni gen. et sp. nov. with a Sporidesmium anamorph, and Ascolacicola austriaca sp. nov. Mycologia 93:478-493 (Pubitemid 33734969)
48. Samuels GJ, Candoussau F, Magni JF (1997) Fungicolous pyrenomycetes 1. Helminthosphaeria and the new family Helminthosphaeriaceae. Mycologia 89:141-155 (Pubitemid 27165024)
49. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041-1052 (Pubitemid 46683225)
50. Scott JA (2001) Studies on indoor fungi. Ph.D. thesis submitted to the University of Toronto, Canada. P. A-231
51. Seifert KA, Gams W, Crous PW, Samuels GJ (eds) (2000) Molecules, morphology and classification: towards monophyletic genera in the Ascomycetes. Stud Mycol 45:1-231
52. Shenoy BD, Jeewon R, Wu WP, Bhat DJ, Hyde KD (2006) Ribosomal and RPB2 DNA sequence analyses suggest that Sporidesmium and morphologically similar genera are polyphyletic. Mycol Res 110:916-928 (Pubitemid 44279409)
53. Shenoy BD, Jeewon R, Hyde KD (2007) Impact of DNA sequencedata on the taxonomy of anamorphic fungi. Fungal Divers 26:1-54
54. Sinclair RC, Eicker A, Bhat DJ (1985) Branching in Spadicoides. Trans Br Mycol Soc 85:736-738
55. Sivanesan A (1984) The bitunicate ascomycetes and their anamorphs. Strauss and Cramer, Vaduz
56. Sivanesan A, Sutton BC (1985) Microfungi on Xanthorrhoea. Trans Br Mycol Soc 85:239-255
57. Subramanian CV (1983) Hyphomycetes: taxonomy and biology. Academic, London
58. Subramanian CV, Bhat DJ (1977) Bahusutrabeeja, a new genus of the Hyphomycetes. Can J Bot 55:2202-2206
59. Subramanian CV, Sekar G (1989) (1987) Three bitunicate ascomycetes and their anamorphs. Kavaka 15:87-98
60. Sutton BC (1973) Hyphomycetes from Manitoba and Saskatchewan, Canada. Mycol Pap 132:49-51
61. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (* and other methods) version 4b10. Sinauer, Sunderland
62. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
63. Tsui CKM, Goh TK, Hyde KD, Hodgkiss IJ (2001) New species or records of Cacumisporium, Helicosporium, Monotosporella and Bahusutrabeeja (Hyphomycetes) on submerged wood in Hong Kong streams. Mycologia 93:389-397
64. Upadhyay HP (1966) Soil fungi from North-East Brazil. II. Mycopathol Mycol Appl 30:276-286
65. Wang CJK (1976) Spadicoides in New York. Mem N Y Bot Gard 28:218-224
66. Wang CJK, Sutton BC (1982) New and rare lignicolous hyphomycetes. Mycologia 74:489-500
67. Wang CJK, Sutton BC (1998) Diplococcium hughesii sp. nov. with a Selenosporella synanamorph. Can J Bot 76:1608-1613 (Pubitemid 29150626)
68. White TJ, Bruns TD, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 315-322
69. Wu WP, McKenzie EHC (2003) Obeliospora minima sp. nov. and four other hyphomycetes with conidia bearing appendages. Fungal Divers 12:223-234
70. Zwickl DJ (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.