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Volumn 20, Issue 3, 2014, Pages

Virtual screening of potential inhibitors from TCM for the CPSF30 binding site on the NS1A protein of influenza a virus

Author keywords

Influenza A virus; Molecular docking; Molecular simulation; NS1A CPSF30 binding site

Indexed keywords

MEMBRANE PROTEIN; NONSTRUCTURAL PROTEIN 1; PROTEIN CPSF30; PROTEIN INHIBITOR; UNCLASSIFIED DRUG; ANTIVIRUS AGENT; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; INS1 PROTEIN, INFLUENZA VIRUS; VIRUS PROTEIN;

EID: 84894090822     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-014-2142-7     Document Type: Article
Times cited : (15)

References (57)
  • 2
    • 33244482001 scopus 로고    scopus 로고
    • Pandemic Influenza: The inside story
    • Nicholls H (2006) Pandemic Influenza: the inside story. PLoS Biol 4:e50
    • (2006) PLoS Biol , vol.4
    • Nicholls, H.1
  • 3
    • 0036514779 scopus 로고    scopus 로고
    • Updating the accounts: Global mortality of the 1918-1920 "Spanish" influenza pandemic
    • Johnson NP, Mueller J (2002) Updating the accounts: global mortality of the 1918-1920 "Spanish" influenza pandemic. Bull Hist Med 76:105-115
    • (2002) Bull Hist Med , vol.76 , pp. 105-115
    • Johnson, N.P.1    Mueller, J.2
  • 4
    • 67650494311 scopus 로고    scopus 로고
    • Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus
    • Trifonov V, Khiabanian H, Rabadan R (2009) Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus. N Engl J Med 361:115-119
    • (2009) N Engl J Med , vol.361 , pp. 115-119
    • Trifonov, V.1    Khiabanian, H.2    Rabadan, R.3
  • 5
    • 0344395604 scopus 로고    scopus 로고
    • Are We Ready for Pandemic Influenza?
    • DOI 10.1126/science.1090350
    • Webby RJ, Webster RG (2003) Are we ready for pandemic influenza? Science 302:1519-1522 (Pubitemid 37475685)
    • (2003) Science , vol.302 , Issue.5650 , pp. 1519-1522
    • Webby, R.J.1    Webster, R.G.2
  • 6
    • 77955505570 scopus 로고    scopus 로고
    • Avian influenza pandemic preparedness: Developing prepandemic and pandemic vaccines against a moving target
    • Singh N, Pandey A, Mittal SK (2010) Avian influenza pandemic preparedness: developing prepandemic and pandemic vaccines against a moving target. Expert Rev Mol Med 12:e14
    • (2010) Expert Rev Mol Med , vol.12
    • Singh, N.1    Pandey, A.2    Mittal, S.K.3
  • 9
    • 61849118968 scopus 로고    scopus 로고
    • Global transmission of oseltamivir-resistant influenza
    • Moscona A (2009) Global transmission of oseltamivir-resistant influenza. N Engl J Med 360:953-956
    • (2009) N Engl J Med , vol.360 , pp. 953-956
    • Moscona, A.1
  • 10
    • 0037565268 scopus 로고    scopus 로고
    • Intracellular warfare between human influenza viruses and human cells: The roles of the viral NS1 protein
    • DOI 10.1016/S0042-6822(03)00119-3
    • Krug RM, Yuan W, Noah DL, Latham AG (2003) Intracellular warfare between human influenza viruses and human cells: the roles of the viral NS1 protein. Virology 309:181-189 (Pubitemid 36579212)
    • (2003) Virology , vol.309 , Issue.2 , pp. 181-189
    • Krug, R.M.1    Yuan, W.2    Noah, D.L.3    Latham, A.G.4
  • 11
    • 33645792617 scopus 로고    scopus 로고
    • The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target
    • Twu KY, Noah DL, Rao P, Kuo RL, Krug RM (2006) The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target. J Virol 80:3957-3965
    • (2006) J Virol , vol.80 , pp. 3957-3965
    • Twu, K.Y.1    Noah, D.L.2    Rao, P.3    Kuo, R.L.4    Krug, R.M.5
  • 12
    • 59449110919 scopus 로고    scopus 로고
    • Structural basis for dsRNA recognition by NS1 protein of influenza Avirus
    • Cheng A, Wong SM, Yuan YA (2009) Structural basis for dsRNA recognition by NS1 protein of influenza Avirus. Cell Res 19:187-195
    • (2009) Cell Res , vol.19 , pp. 187-195
    • Cheng, A.1    Wong, S.M.2    Yuan, Y.A.3
  • 13
    • 68649122631 scopus 로고    scopus 로고
    • Emerging antiviral targets for influenza A virus
    • Krug RM, Aramini JM (2009) Emerging antiviral targets for influenza A virus. Trends Pharmacol Sci 30:269-277
    • (2009) Trends Pharmacol Sci , vol.30 , pp. 269-277
    • Krug, R.M.1    Aramini, J.M.2
  • 14
    • 34547136235 scopus 로고    scopus 로고
    • Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses
    • DOI 10.1074/jbc.M611619200
    • Yin C, Khan JA, Swapna GVT, Ertekin A, Krug RM, Tong L, Montelione GT (2007) Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses. J Biol Chem 282:20584-20592 (Pubitemid 47099997)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.28 , pp. 20584-20592
    • Yin, C.1    Khan, J.A.2    Swapna, G.V.T.3    Ertekin, A.4    Krug, R.M.5    Tong, L.6    Montelione, G.T.7
  • 15
    • 54449099369 scopus 로고    scopus 로고
    • The multifunctional NS1 protein of influenza A viruses
    • Hale BG, Randall RE, Ortín J, Jackson D (2008) The multifunctional NS1 protein of influenza A viruses. J Gen Virol 89:2359-2376
    • (2008) J Gen Virol , vol.89 , pp. 2359-2376
    • Hale, B.G.1    Randall, R.E.2    Ortín, J.3    Jackson, D.4
  • 16
    • 0027102716 scopus 로고
    • Binding of influenza a virus NS1 protein to dsRNA in vitro
    • Hatada E, Fukuda R (1992) Binding of influenza Avirus NS1 protein to dsRNA in vitro. J Gen Virol 73:3325-3329 (Pubitemid 23014192)
    • (1992) Journal of General Virology , vol.73 , Issue.12 , pp. 3325-3329
    • Hatada, E.1    Fukuda, R.2
  • 17
    • 33646478272 scopus 로고    scopus 로고
    • The primary function of RNA binding by the influenza Avirus NS1 protein in infected cells: Inhibiting the 2′-5′ oligo (A) synthetase/RNase L pathway
    • Min JY, Krug RM (2006) The primary function of RNA binding by the influenza Avirus NS1 protein in infected cells: inhibiting the 2′-5′ oligo (A) synthetase/RNase L pathway. Proc Natl Acad Sci U S A 103:7100-7105
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7100-7105
    • Min, J.Y.1    Krug, R.M.2
  • 18
    • 36348987303 scopus 로고    scopus 로고
    • Viral encounters with 2′,5′-oligoadenylate synthetase and RNase L during the interferon antiviral response
    • Silverman RH (2007) Viral encounters with 2′,5′- oligoadenylate synthetase and RNase L during the interferon antiviral response. J Virol 81:12720-12729
    • (2007) J Virol , vol.81 , pp. 12720-12729
    • Silverman, R.H.1
  • 19
    • 0032086357 scopus 로고    scopus 로고
    • Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3′ end formation of cellular pre-mRNAs
    • Nemeroff ME, Barabino SML, Li Y, Keller W, Krug RM (1998) Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3′ end formation of cellular pre-mRNAs. Mol Cell 1:991-1000 (Pubitemid 128379260)
    • (1998) Molecular Cell , vol.1 , Issue.7 , pp. 991-1000
    • Nemeroff, M.E.1    Barabino, S.M.L.2    Li, Y.3    Keller, W.4    Krug, R.M.5
  • 20
    • 33749330704 scopus 로고    scopus 로고
    • Functional association between viral and cellular transcription during influenza virus infection
    • DOI 10.1002/rmv.512
    • Engelhardt OG, Fodor E (2006) Functional association between viral and cellular transcription during influenza virus infection. Rev Med Virol 16:329-345 (Pubitemid 44497313)
    • (2006) Reviews in Medical Virology , vol.16 , Issue.5 , pp. 329-345
    • Engelhardt, O.G.1    Fodor, E.2
  • 21
    • 0037444193 scopus 로고    scopus 로고
    • Cellular antiviral responses against influenza A virus are countered at the posttranscriptional level by the viral NS1A protein via its binding to a cellular protein required for the 3′ end processing of cellular pre-mRNAS
    • DOI 10.1016/S0042-6822(02)00127-7
    • Noah DL, Twu KY, Krug RM (2003) Cellular antiviral responses against influenza A virus are countered at the posttranscriptional level by the viralNS1A protein via its binding to a cellular protein required for the 3′ end processing of cellular pre-mRNAS. Virology 307:386-395 (Pubitemid 36344169)
    • (2003) Virology , vol.307 , Issue.2 , pp. 386-395
    • Noah, D.L.1    Twu, K.Y.2    Krug, R.M.3
  • 22
    • 34250810666 scopus 로고    scopus 로고
    • Multiple anti-interferon actions of the influenza A virus NS1 protein
    • DOI 10.1128/JVI.02581-06
    • Kochs G, García-Sastre A, Martínez-Sobrido L (2007) Multiple antiinterferon actions of the influenza A virus NS1 protein. J Virol 81:7011-7021 (Pubitemid 46986637)
    • (2007) Journal of Virology , vol.81 , Issue.13 , pp. 7011-7021
    • Kochs, G.1    Garcia-Sastre, A.2    Martinez-Sobrido, L.3
  • 24
    • 77951976539 scopus 로고    scopus 로고
    • Structures of influenza A proteins and insights into antiviral drug targets
    • Das K, Aramini JM, Ma LC, Krug RM, Arnold E (2010) Structures of influenza A proteins and insights into antiviral drug targets. Nat Struct Mol Biol 17:530-538
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 530-538
    • Das, K.1    Aramini, J.M.2    Ma, L.C.3    Krug, R.M.4    Arnold, E.5
  • 25
    • 59649088815 scopus 로고    scopus 로고
    • Novel influenza virus NS1 antagonists block replication and restore innate immune function
    • Basu D, Walkiewicz MP, Frieman M, Baric RS, Auble DT, Engel DA (2009) Novel influenza virus NS1 antagonists block replication and restore innate immune function. J Virol 83:1881-1891
    • (2009) J Virol , vol.83 , pp. 1881-1891
    • Basu, D.1    Walkiewicz, M.P.2    Frieman, M.3    Baric, R.S.4    Auble, D.T.5    Engel, D.A.6
  • 26
    • 84855199911 scopus 로고    scopus 로고
    • Design, synthesis, and evaluation of novel small molecule inhibitors of the influenza virus protein NS1
    • Jablonski JJ, Basu D, Engel DA, Geysen HM (2012) Design, synthesis, and evaluation of novel small molecule inhibitors of the influenza virus protein NS1. Bioorg Med Chem 20:487-497
    • (2012) Bioorg Med Chem , vol.20 , pp. 487-497
    • Jablonski, J.J.1    Basu, D.2    Engel, D.A.3    Geysen, H.M.4
  • 27
    • 78651227626 scopus 로고    scopus 로고
    • Novel inhibitor of influenza non-structural protein 1 blocks multicycle replication in an RNase L-dependent manner
    • Walkiewicz MP, Basu D, Jablonski JJ, Geysen HM, Engel DA (2011) Novel inhibitor of influenza non-structural protein 1 blocks multicycle replication in an RNase L-dependent manner. J Gen Virol 92:60-70
    • (2011) J Gen Virol , vol.92 , pp. 60-70
    • Walkiewicz, M.P.1    Basu, D.2    Jablonski, J.J.3    Geysen, H.M.4    Engel, D.A.5
  • 30
    • 84878775187 scopus 로고    scopus 로고
    • A novel integrated framework and improved methodology of computer-aided drug design
    • Chen CYC (2013) A novel integrated framework and improved methodology of computer-aided drug design. Curr Top Med Chem 13:965-988
    • (2013) Curr Top Med Chem , vol.13 , pp. 965-988
    • Chen, C.Y.C.1
  • 32
    • 84855282742 scopus 로고    scopus 로고
    • Two birds with one stone? Possible dual-targeting H1N1 inhibitors from traditional Chinese medicine
    • Chang SS, Huang HJ, Chen CYC (2011) Two birds with one stone? Possible dual-targeting H1N1 inhibitors from traditional Chinese medicine. PLoS Comput Biol 7:e1002315
    • (2011) PLoS Comput Biol , vol.7
    • Chang, S.S.1    Huang, H.J.2    Chen, C.Y.C.3
  • 35
    • 78650945927 scopus 로고    scopus 로고
    • Potent inhibitor design against H1N1 swine influenza: Structure-based and molecular dynamics analysis for M2 inhibitors from traditional Chinese medicine database
    • Lin CH, Chang TT, Sun MF, Chen HY, Tsai FJ, Chang KL, Fisher M, Chen CYC (2011) Potent inhibitor design against H1N1 swine influenza: structure-based and molecular dynamics analysis for M2 inhibitors from traditional Chinese medicine database. J Biomol Struct Dyn 28:471-482
    • (2011) J Biomol Struct Dyn , vol.28 , pp. 471-482
    • Lin, C.H.1    Chang, T.T.2    Sun, M.F.3    Chen, H.Y.4    Tsai, F.J.5    Chang, K.L.6    Fisher, M.7    Chen, C.Y.C.8
  • 36
    • 79952662112 scopus 로고    scopus 로고
    • Molecular dynamics analysis of potent inhibitors of M2 proton channel against H1N1 swine influenza virus
    • Lai CY, Chang TT, Sun MF, Chen HY, Tsai FJ, Lin JG, Chen CYC (2011) Molecular dynamics analysis of potent inhibitors of M2 proton channel against H1N1 swine influenza virus. Mol Simul 37:250-256
    • (2011) Mol Simul , vol.37 , pp. 250-256
    • Lai, C.Y.1    Chang, T.T.2    Sun, M.F.3    Chen, H.Y.4    Tsai, F.J.5    Lin, J.G.6    Chen, C.Y.C.7
  • 37
    • 79959813391 scopus 로고    scopus 로고
    • Drug design for hemagglutinin: Screening and molecular dynamics from traditional Chinese medicine database
    • Chang TT, Sun MF, Chen HY, Tsai FJ, Chen CYC (2011) Drug design for hemagglutinin: screening and molecular dynamics from traditional Chinese medicine database. J Taiwan Inst Chem Eng 42:563-571
    • (2011) J Taiwan Inst Chem Eng , vol.42 , pp. 563-571
    • Chang, T.T.1    Sun, M.F.2    Chen, H.Y.3    Tsai, F.J.4    Chen, C.Y.C.5
  • 40
    • 79251561193 scopus 로고    scopus 로고
    • TCM Database@Taiwan: The world's largest traditional Chinese medicine database for drug screening in silico
    • Chen CYC (2011) TCM Database@Taiwan: the world's largest traditional Chinese medicine database for drug screening in silico. PLoS ONE 6:e15939
    • (2011) PLoS ONE , vol.6
    • Chen, C.Y.C.1
  • 41
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • Sanner MF (1999) Python: a programming language for software integration and development. J Mol Graph Model 17:57-61
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 47
    • 0001041959 scopus 로고    scopus 로고
    • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
    • Jakalian A, Bush BL, Jack DB, Bayly CI (2000) Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method. J Comput Chem 21:132-146
    • (2000) J Comput Chem , vol.21 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Bayly, C.I.4
  • 50
    • 36449007836 scopus 로고
    • Constant pressure molecular dynamics simulation: The Langevin pistonmethod
    • Feller SE, Zhang Y, Pastor RW, Brooks BR (1995) Constant pressure molecular dynamics simulation: the Langevin pistonmethod. J Chem Phys 103:4613-4621
    • (1995) J Chem Phys , vol.103 , pp. 4613-4621
    • Feller, S.E.1    Zhang, Y.2    Pastor, R.W.3    Brooks, B.R.4
  • 51
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327-341
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 52
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N log (N) method for Ewald sums in large systems
    • Darden T, York D, Pedersen L (1993) Particle mesh Ewald: An N log (N) method for Ewald sums in large systems. J Chem Phys 98:10089-10093
    • (1993) J Chem Phys , vol.98 , pp. 10089-10093
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 54
    • 0034521981 scopus 로고    scopus 로고
    • Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
    • DOI 10.1021/ar000033j
    • Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M, Lee T, Duan Y, Wang W, Donini O, Cieplak P, Srinivasan J, Case DA, Cheatham TE (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 33:889-897 (Pubitemid 32056774)
    • (2000) Accounts of Chemical Research , vol.33 , Issue.12 , pp. 889-897
    • Kollman, P.A.1    Massova, I.2    Reyes, C.3    Kuhn, B.4    Huo, S.5    Chong, L.6    Lee, M.7    Lee, T.8    Duan, Y.9    Wang, W.10    Donini, O.11
  • 56
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • DOI 10.1016/S0169-409X(00)00129-0, PII S0169409X00001290
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46:3-26 (Pubitemid 33653411)
    • (2000) Advanced Drug Delivery Reviews , vol.46 , Issue.1-3 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 57
    • 53349145331 scopus 로고    scopus 로고
    • FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects
    • Lagorce D, Sperandio O, Galons H, Miteva M, Villoutreix B (2008) FAF-Drugs2: free ADME/tox filtering tool to assist drug discovery and chemical biology projects. BMC Bioinforma 9:1-9
    • (2008) BMC Bioinforma , vol.9 , pp. 1-9
    • Lagorce, D.1    Sperandio, O.2    Galons, H.3    Miteva, M.4    Villoutreix, B.5


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