-
1
-
-
82155171291
-
-
E. Bielska, X. Lucas, A. Czerwoniec, J. Kasprzak, K. Kaminska, J. Bujnicki, BioTechnologia, J. Biotechnol, Comput. Biol. Bionanotechnol. 2011, 92, 249-264.
-
(2011)
BioTechnologia, J. Biotechnol, Comput. Biol. Bionanotechnol.
, vol.92
, pp. 249-264
-
-
Bielska, E.1
Lucas, X.2
Czerwoniec, A.3
Kasprzak, J.4
Kaminska, K.5
Bujnicki, J.6
-
2
-
-
33244483907
-
-
H. Chen, P. D. Lyne, F. Giordanetto, T. Lovell, J. Li, J. Chem. Inf. Model. 2005, 46, 401-415.
-
(2005)
J. Chem. Inf. Model.
, vol.46
, pp. 401-415
-
-
Chen, H.1
Lyne, P.D.2
Giordanetto, F.3
Lovell, T.4
Li, J.5
-
3
-
-
34547670476
-
-
K. Onodera, K. Satou, H. Hirota, J. Chem. Inf. Model. 2007, 47, 1609-1618.
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1609-1618
-
-
Onodera, K.1
Satou, K.2
Hirota, H.3
-
4
-
-
11644261806
-
-
G. M. Morris, D. S. Goodsell, R. S. Halliday, R. Huey, W. E. Hart, R. K. Belew, A. J. Olson, J. Comput. Chem. 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
6
-
-
0035025191
-
-
T. J. Ewing, S. Makino, A. G. Skillman, I. D. Kuntz, J. Comput. Aided Mol. Des. 2001, 15, 411-428.
-
(2001)
J. Comput. Aided Mol. Des.
, vol.15
, pp. 411-428
-
-
Ewing, T.J.1
Makino, S.2
Skillman, A.G.3
Kuntz, I.D.4
-
7
-
-
0030599010
-
-
M. Rarey, B. Kramer, T. Lengauer, G. Klebe, J. Mol. Biol. 1996, 261, 470-489.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
8
-
-
26444586139
-
-
M. L. Verdonk, G. Chessari, J. C. Cole, M. J. Hartshorn, C. W. Murray, J. W. M. Nissink, R. D. Taylor, R. Taylor, J. Med. Chem. 2005, 48, 6504-6515.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6504-6515
-
-
Verdonk, M.L.1
Chessari, G.2
Cole, J.C.3
Hartshorn, M.J.4
Murray, C.W.5
Nissink, J.W.M.6
Taylor, R.D.7
Taylor, R.8
-
9
-
-
0041919542
-
-
M. L. Verdonk, J. C. Cole, M. J. Hartshorn, C. W. Murray, R. D. Taylor, Proteins 2003, 52, 609-623.
-
(2003)
Proteins
, vol.52
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
10
-
-
12144289984
-
-
R. A. Friesner, J. L. Banks, R. B. Murphy, T. A. Halgren, J. J. Klicic, D. T. Mainz, M. P. Repasky, E. H. Knoll, M. Shelley, J. K. Perry, D. E. Shaw, P. Francis, P. S. Shenkin, J. Med. Chem. 2004, 47, 1739-1749.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
12
-
-
77957591555
-
-
W. Xu, G. Chen, W. Zhu, Z. Zuo, Bioorg. Med. Chem. Lett. 2010, 20, 5763-5766.
-
(2010)
Bioorg. Med. Chem. Lett.
, vol.20
, pp. 5763-5766
-
-
Xu, W.1
Chen, G.2
Zhu, W.3
Zuo, Z.4
-
13
-
-
62549131251
-
-
P. A. Holt, P. Ragazzon, L. Strekowski, J. B. Chaires, J. O. Trent, Nucleic Acids Res. 2009, 37, 1280-1287.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1280-1287
-
-
Holt, P.A.1
Ragazzon, P.2
Strekowski, L.3
Chaires, J.B.4
Trent, J.O.5
-
14
-
-
84878747400
-
-
e
-
J. Liu, D. Dyer, J. Wang, S. Wang, X. Du, B. Xu, H. Zhang, X. Wang, W. Hu, PLoS ONE, 2013, 8, e 64984.
-
(2013)
PLoS ONE
, vol.8
, pp. 64984
-
-
Liu, J.1
Dyer, D.2
Wang, J.3
Wang, S.4
Du, X.5
Xu, B.6
Zhang, H.7
Wang, X.8
Hu, W.9
-
15
-
-
84876066260
-
-
e
-
X. Lucas, S. Simon, R. Schubert, S. Gunther, PLoS ONE 2013, 8, e 60679.
-
(2013)
PLoS ONE
, vol.8
, pp. 60679
-
-
Lucas, X.1
Simon, S.2
Schubert, R.3
Gunther, S.4
-
16
-
-
1942471391
-
-
P. Ferrara, H. Gohlke, D. J. Price, G. Klebe, C. L. Brooks, J. Med. Chem. 2004, 47, 3032-3047.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 3032-3047
-
-
Ferrara, P.1
Gohlke, H.2
Price, D.J.3
Klebe, G.4
Brooks, C.L.5
-
18
-
-
7444253428
-
-
L. Hood, J. R. Heath, M. E. Phelps, B. Lin, Science 2004, 306, 640-643.
-
(2004)
Science
, vol.306
, pp. 640-643
-
-
Hood, L.1
Heath, J.R.2
Phelps, M.E.3
Lin, B.4
-
20
-
-
38549153238
-
-
DD 425
-
A. Andreeva, D. Howorth, J.-M. Chandonia, S. E. Brenner, T. J. P. Hubbard, C. Chothia, A. G. Murzin, Nucleic Acids Res. 2008, 36, D 419 -D 425.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 419
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.-M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
21
-
-
33846033844
-
-
DD 297
-
L. H. Greene, T. E. Lewis, S. Addou, A. Cuff, T. Dallman, M. Dibley, O. Redfern, F. Pearl, R. Nambudiry, A. Reid, I. Sillitoe, C. Yeats, J. M. Thornton, C. A. Orengo, Nucleic Acids Res. 2007, 35, D 291 -D 297.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 291
-
-
Greene, L.H.1
Lewis, T.E.2
Addou, S.3
Cuff, A.4
Dallman, T.5
Dibley, M.6
Redfern, O.7
Pearl, F.8
Nambudiry, R.9
Reid, A.10
Sillitoe, I.11
Yeats, C.12
Thornton, J.M.13
Orengo, C.A.14
-
22
-
-
0033954256
-
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, P. E. Bourne, Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
23
-
-
0034677669
-
-
C. A. Wilson, J. Kreychman, M. Gerstein, J. Mol. Biol. 2000, 297, 233-249.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 233-249
-
-
Wilson, C.A.1
Kreychman, J.2
Gerstein, M.3
-
25
-
-
0036435882
-
-
G. J. Bartlett, C. T. Porter, N. Borkakoti, J. M. Thornton, J. Mol. Biol. 2002, 324, 105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
26
-
-
84878778709
-
-
A. Carrieri, V. I. Perez-Nueno, G. Lentini, D. W. Ritchie, Curr. Top Med. Chem. 2013, 13, 1069-1697.
-
(2013)
Curr. Top Med. Chem.
, vol.13
, pp. 1069-1697
-
-
Carrieri, A.1
Perez-Nueno, V.I.2
Lentini, G.3
Ritchie, D.W.4
-
27
-
-
84890427506
-
-
U. Koch, M. Hamacher, P. Nussbaumer, Biochim. Biophys. Acta 2013, 1844, 156-161.
-
(2013)
Biochim. Biophys. Acta
, vol.1844
, pp. 156-161
-
-
Koch, U.1
Hamacher, M.2
Nussbaumer, P.3
-
32
-
-
0032475963
-
-
R. B. Russell, P. D. Sasieni, M. J. E. Sternberg, J. Mol. Biol. 1998, 282, 903-918.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 903-918
-
-
Russell, R.B.1
Sasieni, P.D.2
Sternberg, M.J.E.3
-
35
-
-
0032919364
-
-
H. Ogata, S. Goto, K. Sato, W. Fujibuchi, H. Bono, M. Kanehisa, Nucleic Acids Res. 1999, 27, 29-34.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
37
-
-
84864264343
-
-
M. M. Mysinger, M. Carchia, J. J. Irwin, B. K. Shoichet, J. Med. Chem. 2012, 55, 6582-6594.
-
(2012)
J. Med. Chem.
, vol.55
, pp. 6582-6594
-
-
Mysinger, M.M.1
Carchia, M.2
Irwin, J.J.3
Shoichet, B.K.4
-
42
-
-
33750991346
-
-
N. Huang, B. K. Shoichet, J. J. Irwin, J. Med. Chem. 2006, 49, 6789-6801.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
48
-
-
0036827075
-
-
J. L. Durant, B. A. Leland, D. R. Henry, J. G. Nourse, J. Chem. Inf. Comput. Sci. 2002, 42, 1273-1280.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 1273-1280
-
-
Durant, J.L.1
Leland, B.A.2
Henry, D.R.3
Nourse, J.G.4
-
49
-
-
33745359822
-
-
R. Guha, M. T. Howard, G. R. Hutchison, P. Murray-Rust, H. Rzepa, C. Steinbeck, J. Wegner, E. L. Willighagen, J. Chem. Inf. Model. 2006, 46, 991-998.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 991-998
-
-
Guha, R.1
Howard, M.T.2
Hutchison, G.R.3
Murray-Rust, P.4
Rzepa, H.5
Steinbeck, C.6
Wegner, J.7
Willighagen, E.L.8
-
51
-
-
0041903760
-
-
L. Xue, J. W. Godden, F. L. Stahura, J. Bajorath, J. Chem. Inf. Comput. Sci. 2003, 43, 1151-1157.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1151-1157
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
56
-
-
33745359822
-
-
R. Guha, M. T. Howard, G. R. Hutchison, P. Murray-Rust, H. Rzepa, C. Steinbeck, J. Wegner, E. L. Willighagen, J. Chem. Inf. Model. 2006, 46, 991-998.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 991-998
-
-
Guha, R.1
Howard, M.T.2
Hutchison, G.R.3
Murray-Rust, P.4
Rzepa, H.5
Steinbeck, C.6
Wegner, J.7
Willighagen, E.L.8
-
57
-
-
0035658264
-
-
X. Chen, M. Liu, M. K. Gilson, Comb. Chem. High Throughput Screen. 2001, 4, 719-725.
-
(2001)
Comb. Chem. High Throughput Screen.
, vol.4
, pp. 719-725
-
-
Chen, X.1
Liu, M.2
Gilson, M.K.3
-
58
-
-
33644876210
-
-
DD 672
-
D. S. Wishart, C. Knox, A. C. Guo, S. Shrivastava, M. Hassanali, P. Stothard, Z. Chang, J. Woolsey, Nucleic Acids Res. 2006, 34, D 668 -D 672.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 668
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Shrivastava, S.4
Hassanali, M.5
Stothard, P.6
Chang, Z.7
Woolsey, J.8
-
59
-
-
0033954256
-
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, P. E. Bourne, Nucleic Acids Res. 2000, 28, 235-42.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
60
-
-
0028501715
-
-
G. W. Milne, M. C. Nicklaus, J. S. Driscoll, S. Wang, D. Zaharevitz, J. Chem. Inf. Comput. Sci. 1994, 34, 1219-24.
-
(1994)
J. Chem. Inf. Comput. Sci.
, vol.34
, pp. 1219-1224
-
-
Milne, G.W.1
Nicklaus, M.C.2
Driscoll, J.S.3
Wang, S.4
Zaharevitz, D.5
-
61
-
-
84862192766
-
-
DD 1107
-
A. Gaulton, L. J. Bellis, A. P. Bento, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, D. Michalovich, B. Al-Lazikani, J. P. Overington, Nucleic Acids Res. 2012, 40, D 1100 -D 1107.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1100
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.P.11
-
62
-
-
0035324932
-
-
J. H. Voigt, B. Bienfait, S. Wang, M. C. Nicklaus, J. Chem. Inf. Comput. Sci. 2001, 41, 702-712.
-
(2001)
J. Chem. Inf. Comput. Sci.
, vol.41
, pp. 702-712
-
-
Voigt, J.H.1
Bienfait, B.2
Wang, S.3
Nicklaus, M.C.4
-
63
-
-
15444350252
-
-
F. R. Blattner, G. Plunkett, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, Y. Shao, Science 1997, 277, 1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
64
-
-
33845365051
-
-
S. B. Pandit, Y. Zhang, J. Skolnick, Biophys. J. 2006, 91, 4180-4190.
-
(2006)
Biophys. J.
, vol.91
, pp. 4180-4190
-
-
Pandit, S.B.1
Zhang, Y.2
Skolnick, J.3
-
65
-
-
0037361941
-
-
N. Salim, J. Holliday, P. Willett, J. Chem. Inf. Comput. Sci. 2003, 43, 435-442.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 435-442
-
-
Salim, N.1
Holliday, J.2
Willett, P.3
-
66
-
-
33845782959
-
-
M. Whittle, V. J. Gillet, P. Willett, J. Loesel, J. Chem. Inf. Model. 2006, 46, 2206-2219.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2206-2219
-
-
Whittle, M.1
Gillet, V.J.2
Willett, P.3
Loesel, J.4
-
68
-
-
80053611773
-
-
J. D. Holliday, E. Kanoulas, N. Malim, P. Willett, J. Cheminform. 2011, 3, 29.
-
(2011)
J. Cheminform.
, vol.3
, pp. 29
-
-
Holliday, J.D.1
Kanoulas, E.2
Malim, N.3
Willett, P.4
-
69
-
-
84858053438
-
-
F. Svensson, A. Karlen, C. Skold, J. Chem. Inf. Model. 2012, 52, 225-232.
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 225-232
-
-
Svensson, F.1
Karlen, A.2
Skold, C.3
-
70
-
-
57549102789
-
-
M. L. Verdonk, P. N. Mortenson, R. J. Hall, M. J. Hartshorn, C. W. Murray, J. Chem. Inf. Model. 2008, 48, 2214-2225.
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 2214-2225
-
-
Verdonk, M.L.1
Mortenson, P.N.2
Hall, R.J.3
Hartshorn, M.J.4
Murray, C.W.5
-
73
-
-
33845950113
-
-
P. Sperandeo, R. Cescutti, R. Villa, C. Di Benedetto, D. Candia, G. Deho, A. Polissi, J Bacteriol. 2007, 189, 244-253.
-
(2007)
J Bacteriol.
, vol.189
, pp. 244-253
-
-
Sperandeo, P.1
Cescutti, R.2
Villa, R.3
Di Benedetto, C.4
Candia, D.5
Deho, G.6
Polissi, A.7
-
74
-
-
46049106143
-
-
P. Sperandeo, F. K. Lau, A. Carpentieri, C. De Castro, A. Molinaro, G. Deho, T. J. Silhavy, A. Polissi, J. Bacteriol. 2008, 190, 4460-4469.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4460-4469
-
-
Sperandeo, P.1
Lau, F.K.2
Carpentieri, A.3
De Castro, C.4
Molinaro, A.5
Deho, G.6
Silhavy, T.J.7
Polissi, A.8
|