-
1
-
-
84863393843
-
The splicing factor srsf1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation
-
Anczukow O, Rosenberg AZ, Akerman M, Das S, Zhan L, Karni R, Muthuswamy SK, Krainer AR. 2012. The splicing factor SRSF1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation. Nat Struct Mol Biol 19: 220-228.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 220-228
-
-
Anczukow, O.1
Rosenberg, A.Z.2
Akerman, M.3
Das, S.4
Zhan, L.5
Karni, R.6
Muthuswamy, S.K.7
Krainer, A.R.8
-
2
-
-
79959925808
-
Bioprofiling.de: Analytical web portal for highthroughput cell biology
-
Antonov AV. 2011. BioProfiling.de: Analytical web portal for highthroughput cell biology. Nucleic Acids Res 39: W323-W327.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Antonov, A.V.1
-
3
-
-
77950633122
-
Integrative analysis of the melanoma transcriptome
-
Berger MF, Levin JZ, Vijayendran K, Sivachenko A, Adiconis X, Maguire J, Johnson LA, Robinson J, Verhaak RG, Sougnez C, et al. 2010. Integrative analysis of the melanoma transcriptome. Genome Res 20: 413-427.
-
(2010)
Genome Res
, vol.20
, pp. 413-427
-
-
Berger, M.F.1
Levin, J.Z.2
Vijayendran, K.3
Sivachenko, A.4
Adiconis, X.5
Maguire, J.6
Johnson, L.A.7
Robinson, J.8
Verhaak, R.G.9
Sougnez, C.10
-
4
-
-
67650458526
-
Spleen tyrosine kinase is overexpressed and represents a potential therapeutic target in chronic lymphocytic leukemia
-
Buchner M, Fuchs S, Prinz G, Pfeifer D, Bartholome K, Burger M, Chevalier N, Vallat L, Timmer J, Gribben JG, et al. 2009. Spleen tyrosine kinase is overexpressed and represents a potential therapeutic target in chronic lymphocytic leukemia. Cancer Res 69: 5424-5432.
-
(2009)
Cancer Res
, vol.69
, pp. 5424-5432
-
-
Buchner, M.1
Fuchs, S.2
Prinz, G.3
Pfeifer, D.4
Bartholome, K.5
Burger, M.6
Chevalier, N.7
Vallat, L.8
Timmer, J.9
Gribben, J.G.10
-
5
-
-
70350492284
-
The lymphatic tissue microenvironments in chronic lymphocytic leukemia: In vitro models and the significance of cd40-cd154 interactions
-
author reply 2561-2562
-
Burger JA, Gandhi V. 2009. The lymphatic tissue microenvironments in chronic lymphocytic leukemia: In vitro models and the significance of CD40-CD154 interactions. Blood 114: 2560-2561, author reply 2561-2562.
-
(2009)
Blood
, vol.114
, pp. 2560-2561
-
-
Burger, J.A.1
Gandhi, V.2
-
6
-
-
84866873258
-
Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression
-
Chuang H, Rassenti L, Salcedo M, Licon K, Kohlmann A, Haferlach T, Foa R, Ideker T, Kipps T. 2012. Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression. Blood 120: 2639-2649.
-
(2012)
Blood
, vol.120
, pp. 2639-2649
-
-
Chuang, H.1
Rassenti, L.2
Salcedo, M.3
Licon, K.4
Kohlmann, A.5
Haferlach, T.6
Foa, R.7
Ideker, T.8
Kipps, T.9
-
7
-
-
41349117788
-
Finding community structure in very large networks
-
Clauset A, Newman ME, Moore C. 2004. Finding community structure in very large networks. Phys Rev E 70: 066111.
-
(2004)
Phys Rev E
, vol.70
, pp. 066111
-
-
Clauset, A.1
Newman, M.E.2
Moore, C.3
-
8
-
-
79952220808
-
Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin a
-
Corrionero A, Minana B, Valcarcel J. 2011. Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A. Genes Dev 25: 445-459.
-
(2011)
Genes Dev
, vol.25
, pp. 445-459
-
-
Corrionero, A.1
Minana, B.2
Valcarcel, J.3
-
9
-
-
69349096044
-
L1 retrotransposition in human neural progenitor cells
-
Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, Lovci MT, Morell M, O'Shea KS, Moran JV, Gage FH. 2009. L1 retrotransposition in human neural progenitor cells. Nature 460: 1127-1131.
-
(2009)
Nature
, vol.460
, pp. 1127-1131
-
-
Coufal, N.G.1
Garcia-Perez, J.L.2
Peng, G.E.3
Yeo, G.W.4
Mu, Y.5
Lovci, M.T.6
Morell, M.7
O'Shea, K.S.8
Moran, J.V.9
Gage, F.H.10
-
10
-
-
0000336139
-
Regression models and life tables
-
Cox D. 1972. Regression models and life tables. J R Stat Soc Series B Stat Methodol 34: 187-220.
-
(1972)
J R Stat Soc Series B Stat Methodol
, vol.34
, pp. 187-220
-
-
Cox, D.1
-
11
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis C, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, LinW, Schlesinger F, et al. 2012. Landscape of transcription in human cells. Nature 489: 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
LinW Schlesinger, F.9
-
12
-
-
84866152172
-
Chronic lymphocytic leukaemia is driven by antigen-independent cellautonomous signalling
-
Duhren-von Minden M, U? belhart R, Schneider D, Wossning T, Bach M, Buchner M, Hofmann D, Surova E, Follo M, Kohler F, et al. 2012. Chronic lymphocytic leukaemia is driven by antigen-independent cellautonomous signalling. Nature 489: 309-312.
-
(2012)
Nature
, vol.489
, pp. 309-312
-
-
Duhren-von Minden, M.1
Ubelhart, R.2
Schneider, D.3
Wossning, T.4
Bach, M.5
Buchner, M.6
Hofmann, D.7
Surova, E.8
Follo, M.9
Kohler, F.10
-
13
-
-
79960353160
-
Analysis of the chronic lymphocytic leukemia coding genome: Role of notch1 mutational activation
-
Fabbri G, Rasi S, Rossi D, Trifonov V, Khiabanian H, Ma J, Grunn A, Fangazio M, Capello D, Monti S, et al. 2011. Analysis of the chronic lymphocytic leukemia coding genome: Role of NOTCH1 mutational activation. J Exp Med 208: 1389-1401.
-
(2011)
J Exp Med
, vol.208
, pp. 1389-1401
-
-
Fabbri, G.1
Rasi, S.2
Rossi, D.3
Trifonov, V.4
Khiabanian, H.5
Ma, J.6
Grunn, A.7
Fangazio, M.8
Capello, D.9
Monti, S.10
-
14
-
-
48249129741
-
Molecular and transcriptional characterization of 17p loss in b-cell chronic lymphocytic leukemia
-
Fabris S, Mosca L, Todoerti K, Cutrona G, Lionetti M, Intini D, Matis S, Colombo M, Agnelli L, Gentile M, et al. 2008. Molecular and transcriptional characterization of 17p loss in B-cell chronic lymphocytic leukemia. Genes Chromosomes Cancer 47: 781-793.
-
(2008)
Genes Chromosomes Cancer
, vol.47
, pp. 781-793
-
-
Fabris, S.1
Mosca, L.2
Todoerti, K.3
Cutrona, G.4
Lionetti, M.5
Intini, D.6
Matis, S.7
Colombo, M.8
Agnelli, L.9
Gentile, M.10
-
15
-
-
45849134070
-
Sparse inverse covariance estimation with the graphical lasso
-
Friedman J, Hastie T, Tibshirani R. 2008. Sparse inverse covariance estimation with the graphical lasso. Biostatistics 9: 432-441.
-
(2008)
Biostatistics
, vol.9
, pp. 432-441
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
16
-
-
72549108614
-
A genomic approach to improve prognosis and predict therapeutic response in chronic lymphocytic leukemia
-
Friedman DR,Weinberg JB, Barry WT, Goodman BK, Volkheimer AD, Bond KM, Chen Y, Jiang N, Moore JO, Gockerman JP, et al. 2009. A genomic approach to improve prognosis and predict therapeutic response in chronic lymphocytic leukemia. Clin Cancer Res 15: 6947-6955.
-
(2009)
Clin Cancer Res
, vol.15
, pp. 6947-6955
-
-
Friedman, D.R.1
Weinberg, J.B.2
Barry, W.T.3
Goodman, B.K.4
Volkheimer, A.D.5
Bond, K.M.6
Chen, Y.7
Jiang, N.8
Moore, J.O.9
Gockerman, J.P.10
-
17
-
-
84857886331
-
Estimation of alternative splicing variability in human populations
-
Gonzalez-Porta M, Calvo M, Sammeth M, Guigo R. 2011. Estimation of alternative splicing variability in human populations. Genome Res 22: 528-538.
-
(2011)
Genome Res
, vol.22
, pp. 528-538
-
-
Gonzalez-Porta, M.1
Calvo, M.2
Sammeth, M.3
Guigo, R.4
-
18
-
-
50949128066
-
Bcr ligation induced by igm stimulation results in gene expression and functional changes only in igv h unmutated chronic lymphocytic leukemia (cll) cells
-
Guarini A, Chiaretti S, Tavolaro S, Maggio R, Peragine N, Citarella F, Ricciardi MR, Santangelo S, Marinelli M, De Propris MS, et al. 2008. BCR ligation induced by IgM stimulation results in gene expression and functional changes only in IgV H unmutated chronic lymphocytic leukemia (CLL) cells. Blood 112: 782-792.
-
(2008)
Blood
, vol.112
, pp. 782-792
-
-
Guarini, A.1
Chiaretti, S.2
Tavolaro, S.3
Maggio, R.4
Peragine, N.5
Citarella, F.6
Ricciardi, M.R.7
Santangelo, S.8
Marinelli, M.9
De Propris, M.S.10
-
19
-
-
84858993991
-
Sample-level enrichment analysis unravels shared stress phenotypes among multiple cancer types
-
Gundem G, Lopez-Bigas N. 2012. Sample-level enrichment analysis unravels shared stress phenotypes among multiple cancer types. Genome Med 4: 28.
-
(2012)
Genome Med
, vol.4
, pp. 28
-
-
Gundem, G.1
Lopez-Bigas, N.2
-
20
-
-
33748645500
-
Gencode: Producing a reference annotation for encode
-
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D et al. 2006. GENCODE: Producing a reference annotation for ENCODE. Genome Biol 7: S4.1-S4.9.
-
(2006)
Genome Biol
, vol.7
-
-
Harrow, J.1
Denoeud, F.2
Frankish, A.3
Reymond, A.4
Chen, C.K.5
Chrast, J.6
Lagarde, J.7
Gilbert, J.G.8
Storey, R.9
Swarbreck, D.10
-
21
-
-
78751549662
-
The lymph node microenvironment promotes b-cell receptor signaling nf-kb activation and tumor proliferation in chronic lymphocytic leukemia
-
Herishanu Y, Perez-Galan P, Liu D, Biancotto A, Pittaluga S, Vire B, Gibellini F, Njuguna N, Lee E, Stennett L, et al. 2011. The lymph node microenvironment promotes B-cell receptor signaling, NF-kB activation, and tumor proliferation in chronic lymphocytic leukemia. Blood 117: 563-574.
-
(2011)
Blood
, vol.117
, pp. 563-574
-
-
Herishanu, Y.1
Perez-Galan, P.2
Liu, D.3
Biancotto, A.4
Pittaluga, S.5
Vire, B.6
Gibellini, F.7
Njuguna, N.8
Lee, E.9
Stennett, L.10
-
22
-
-
79955661909
-
Expression analysis of genes located in the minimally deleted regions of 13q14 and 11q22-23 in chronic lymphocytic leukemia-unexpected expression pattern of the rho gtpase activator arhgap20
-
Herold T, Jurinovic V, MulawM, Seiler T, Dufour A, Schneider S, Kakadia PM, Feuring-Buske M, Braess J, Spiekermann K, et al. 2011. Expression analysis of genes located in the minimally deleted regions of 13q14 and 11q22-23 in chronic lymphocytic leukemia-unexpected expression pattern of the RHO GTPase activator ARHGAP20. Genes Chromosomes Cancer 50: 546-558.
-
(2011)
Genes Chromosomes Cancer
, vol.50
, pp. 546-558
-
-
Herold, T.1
Jurinovic, V.2
MulawM Seiler, T.3
Dufour, A.4
Schneider, S.5
Kakadia, P.M.6
Feuring-Buske, M.7
Braess, J.8
Spiekermann, K.9
-
23
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using david bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
24
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
25
-
-
33845438621
-
Are clusters found in one dataset present in another dataset?
-
Kapp AV, Tibshirani R. 2007. Are clusters found in one dataset present in another dataset? Biostatistics 8: 9-31.
-
(2007)
Biostatistics
, vol.8
, pp. 9-31
-
-
Kapp, A.V.1
Tibshirani, R.2
-
26
-
-
0035803464
-
Gene expression profiling of b cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory b cells
-
Klein U, Tu Y, Stolovitzky GA, Mattioli M, Cattoretti G, Husson H, Freedman A, Inghirami G, Cro L, Baldini L, et al. 2001. Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells. J Exp Med 194: 1625-1638.
-
(2001)
J Exp Med
, vol.194
, pp. 1625-1638
-
-
Klein, U.1
Tu, Y.2
Stolovitzky, G.A.3
Mattioli, M.4
Cattoretti, G.5
Husson, H.6
Freedman, A.7
Inghirami, G.8
Cro, L.9
Baldini, L.10
-
28
-
-
84868198427
-
Epigenomic analysis detects widespread gene-body dna hypomethylation in chronic lymphocytic leukemia
-
Kulis M, Heath S, Bibikova M, Queiros AC, Navarro A, Clot G, Martinez-Trillos A, Castellano G, Brun-Heath I, Pinyol M, et al. 2012. Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia. Nat Genet 44: 1236-1242.
-
(2012)
Nat Genet
, vol.44
, pp. 1236-1242
-
-
Kulis, M.1
Heath, S.2
Bibikova, M.3
Queiros, A.C.4
Navarro, A.5
Clot, G.6
Martinez-Trillos, A.7
Castellano, G.8
Brun-Heath, I.9
Pinyol, M.10
-
29
-
-
77953255983
-
A human b-cell interactome identifies myb and foxm1 as master regulators of proliferation in germinal centers
-
Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M,Wang K, Sumazin P, Kustagi M, Bisikirska BC, et al. 2010. A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers. Mol Syst Biol 6: 377.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 377
-
-
Lefebvre, C.1
Rajbhandari, P.2
Alvarez, M.J.3
Bandaru, P.4
Lim, W.K.5
Sato, M.6
Wang, K.7
Sumazin, P.8
Kustagi, M.9
Bisikirska, B.C.10
-
30
-
-
47249146983
-
Fcrl2 expression predicts ighv mutation status and clinical progression in chronic lymphocytic leukemia
-
Li FJ, Ding S, Pan J, Shakhmatov MA, Kashentseva E, Wu J, Li Y, Soong SJ, Chiorazzi N, Davis RS. 2008. FCRL2 expression predicts IGHV mutation status and clinical progression in chronic lymphocytic leukemia. Blood 112: 179-187.
-
(2008)
Blood
, vol.112
, pp. 179-187
-
-
Li, F.J.1
Ding, S.2
Pan, J.3
Shakhmatov, M.A.4
Kashentseva, E.5
Wu, J.6
Li, Y.7
Soong, S.J.8
Chiorazzi, N.9
Davis, R.S.10
-
31
-
-
68149176840
-
Chimeric transcript discovery by paired-end transcriptome sequencing
-
Maher C, Palanisamy N, Brenner J, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette T, Grasso C, Yu J, et al. 2009. Chimeric transcript discovery by paired-end transcriptome sequencing. Proc Natl Acad Sci 106: 12353-12358.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 12353-12358
-
-
Maher, C.1
Palanisamy, N.2
Brenner, J.3
Cao, X.4
Kalyana-Sundaram, S.5
Luo, S.6
Khrebtukova, I.7
Barrette, T.8
Grasso, C.9
Yu, J.10
-
32
-
-
84870837088
-
The gem mapper: Fast, accurate and versatile alignment by filtration
-
Marco-Sola S, Sammeth M, Guigó R, Ribeca P. 2012. The GEM mapper: Fast, accurate and versatile alignment by filtration. Nat Methods 9: 1185-1188
-
(2012)
Nat Methods
, vol.9
, pp. 1185-1188
-
-
Marco-Sola, S.1
Sammeth, M.2
Guigó, R.3
Ribeca, P.4
-
33
-
-
80052857450
-
Thawing frozen robust multi-array analysis (frma)
-
McCall MN, Irizarry RA. 2011. Thawing frozen Robust Multi-array Analysis (fRMA). BMC Bioinformatics 12: 369.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 369
-
-
McCall, M.N.1
Irizarry, R.A.2
-
34
-
-
76549101962
-
Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression
-
Mihailovich M, Militti C, Gabaldon T, Gebauer F. 2010. Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression. Bioessays 32: 109-118.
-
(2010)
Bioessays
, vol.32
, pp. 109-118
-
-
Mihailovich, M.1
Militti, C.2
Gabaldon, T.3
Gebauer, F.4
-
35
-
-
33947581390
-
The impact of translocations and gene fusions on cancer causation
-
Mitelman F, Johansson B,Mertens F. 2007. The impact of translocations and gene fusions on cancer causation. Nat Rev Cancer 7: 233-245.
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 233-245
-
-
Mitelman, F.1
Johansson, B.2
Mertens, F.3
-
36
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a caucasian population
-
Montgomery SB, Sammeth M, Gutierrez-ArcelusM, Lach RP, Ingle C,Nisbett J, Guigo R, Dermitzakis ET. 2010. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature 464: 773-777.
-
(2010)
Nature
, vol.464
, pp. 773-777
-
-
Montgomery, S.B.1
Sammeth, M.2
Gutierrez-Arcelus, M.3
Lach, R.P.4
Ingle, C.5
Nisbett, J.6
Guigo, R.7
Dermitzakis, E.T.8
-
37
-
-
0038724494
-
Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
-
Monti S, Tamayo P, Mesirov J, Golub T. 2003. Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data. Mach Learn 52: 91-118.
-
(2003)
Mach Learn
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
38
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by rna-seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
39
-
-
84872469222
-
The clinical significance of notch1 and sf3b1 mutations in the uk lrf cll4 trial
-
Oscier D, Rose-Zerilli M, Winkelmann N, Gonzalez de Castro D, Gomez B, Forster J, Parker H, Parker A, Gardiner A, Collins A, et al. 2012. The clinical significance of NOTCH1 and SF3B1 mutations in the UK LRF CLL4 trial. Blood 121: 468-475.
-
(2012)
Blood
, vol.121
, pp. 468-475
-
-
Oscier, D.1
Rose-Zerilli, M.2
Winkelmann, N.3
Gonzalez De Castro, D.4
Gomez, B.5
Forster, J.6
Parker, H.7
Parker, A.8
Gardiner, A.9
Collins, A.10
-
40
-
-
33947541694
-
Alternative splicing: An emerging topic in molecular and clinical oncology
-
Pajares M, Ezponda T, Catena R, Calvo A, Pio R, Montuenga L. 2007. Alternative splicing: An emerging topic in molecular and clinical oncology. Lancet Oncol 8: 349-357.
-
(2007)
Lancet Oncol
, vol.8
, pp. 349-357
-
-
Pajares, M.1
Ezponda, T.2
Catena, R.3
Calvo, A.4
Pio, R.5
Montuenga, L.6
-
41
-
-
80054010617
-
Somatic sf3b1 mutation in myelodysplasia with ring sideroblasts
-
Papaemmanuil E, Cazzola M, Boultwood J, Malcovati L, Vyas P, Bowen D, Pellagatti A, Wainscoat JS, Hellstrom-Lindberg E, Gambacorti-Passerini C, et al. 2011. Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts. N Engl J Med 365: 1384-1395.
-
(2011)
N Engl J Med
, vol.365
, pp. 1384-1395
-
-
Papaemmanuil, E.1
Cazzola, M.2
Boultwood, J.3
Malcovati, L.4
Vyas, P.5
Bowen, D.6
Pellagatti, A.7
Wainscoat, J.S.8
Hellstrom-Lindberg, E.9
Gambacorti-Passerini, C.10
-
42
-
-
79955934629
-
Gitools: Analysis and visualisation of genomic data using interactive heat-maps
-
Perez-Llamas C, Lopez-Bigas N. 2011. Gitools: Analysis and visualisation of genomic data using interactive heat-maps. PLoS ONE 6: e19541.
-
(2011)
PLoS ONE
, vol.6
-
-
Perez-Llamas, C.1
Lopez-Bigas, N.2
-
43
-
-
0015898827
-
Conservatism of the approximation sigma (o-e)2-e in the logrank test for survival data or tumor incidence data
-
Peto R, Pike MC. 1973. Conservatism of the approximation sigma (O-E)2-E in the logrank test for survival data or tumor incidence data. Biometrics 29: 579-584.
-
(1973)
Biometrics
, vol.29
, pp. 579-584
-
-
Peto, R.1
Pike, M.C.2
-
44
-
-
77953957633
-
A coding-independent function of gene and pseudogene mrnas regulates tumour biology
-
Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. 2010. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 465: 1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
45
-
-
79958812227
-
Alternative splicing of syk regulates mitosis and cell survival
-
Prinos P, Garneau D, Lucier JF, Gendron D, Couture S, Boivin M, Brosseau JP, Lapointe E, Thibault P, Durand M, et al. 2011. Alternative splicing of SYK regulates mitosis and cell survival. Nat Struct Mol Biol 18: 673-679.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 673-679
-
-
Prinos, P.1
Garneau, D.2
Lucier, J.F.3
Gendron, D.4
Couture, S.5
Boivin, M.6
Brosseau, J.P.7
Lapointe, E.8
Thibault, P.9
Durand, M.10
-
46
-
-
79960036578
-
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
-
Puente XS, Pinyol M, Quesada V, Conde L, Ordonez GR, Villamor N, Escaramis G, Jares P, Bea S, Gonzalez-DiazM, et al. 2011. Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature 475: 101-105.
-
(2011)
Nature
, vol.475
, pp. 101-105
-
-
Puente, X.S.1
Pinyol, M.2
Quesada, V.3
Conde, L.4
Ordonez, G.R.5
Villamor, N.6
Escaramis, G.7
Jares, P.8
Bea, S.9
Gonzalez-Diaz, M.10
-
47
-
-
84555171449
-
Exome sequencing identifies recurrent mutations of the splicing factor sf3b1 gene in chronic lymphocytic leukemia
-
Quesada V, Conde L, Villamor N, Ordonez GR, Jares P, Bassaganyas L, Ramsay AJ, Bea S, Pinyol M, Martinez-Trillos A, et al. 2011. Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nat Genet 44: 47-52.
-
(2011)
Nat Genet
, vol.44
, pp. 47-52
-
-
Quesada, V.1
Conde, L.2
Villamor, N.3
Ordonez, G.R.4
Jares, P.5
Bassaganyas, L.6
Ramsay, A.J.7
Bea, S.8
Pinyol, M.9
Martinez-Trillos, A.10
-
48
-
-
70349237504
-
B-cell antigen receptor signaling enhances chronic lymphocytic leukemia cell migration and survival: Specific targeting with a novel spleen tyrosine kinase inhibitor, r406
-
Quiroga MP, Balakrishnan K, Kurtova AV, Sivina M, Keating MJ,Wierda WG, Gandhi V, Burger JA. 2009. B-cell antigen receptor signaling enhances chronic lymphocytic leukemia cell migration and survival: Specific targeting with a novel spleen tyrosine kinase inhibitor, R406. Blood 114: 1029-1037.
-
(2009)
Blood
, vol.114
, pp. 1029-1037
-
-
Quiroga, M.P.1
Balakrishnan, K.2
Kurtova, A.V.3
Sivina, M.4
Keating, M.J.5
Wierda, W.G.6
Gandhi, V.7
Burger, J.A.8
-
49
-
-
84893655839
-
Sf3b1 mutations in cll are equivalent to p53/atm dysfunction and cause defective puma upregulation in response to chemotherapy
-
Abstract 711. American Society of Hematology, Atlanta, USA
-
Raa DT, Derks IAM, LuijksDM, van Laar J, Monsuur H, Oldreive C, Jethwa A, Hullein J, Stankovic T, Zenz T, et al. 2012. SF3B1 mutations in CLL are equivalent to p53/ATM dysfunction and cause defective puma upregulation in response to chemotherapy. In 54th ASH Annual Meeting and Exposition, Abstract 711. American Society of Hematology, Atlanta, USA.
-
(2012)
54th ASH Annual Meeting and Exposition
-
-
Raa, D.T.1
Derks, I.A.M.2
Luijks, D.M.3
Van Laar, J.4
Monsuur, H.5
Oldreive, C.6
Jethwa, A.7
Hullein, J.8
Stankovic, T.9
Zenz, T.10
-
50
-
-
84878551940
-
Pot1 mutations cause telomere dysfunction in chronic lymphocytic leukemia
-
Ramsay AJ, Quesada V, Foronda M, Conde L, Martinez-Trillos A, Villamor N, Rodriguez D, Kwarciak A, Garabaya C, Gallardo M, et al. 2013. POT1 mutations cause telomere dysfunction in chronic lymphocytic leukemia. Nat Genet 45: 526-530.
-
(2013)
Nat Genet
, vol.45
, pp. 526-530
-
-
Ramsay, A.J.1
Quesada, V.2
Foronda, M.3
Conde, L.4
Martinez-Trillos, A.5
Villamor, N.6
Rodriguez, D.7
Kwarciak, A.8
Garabaya, C.9
Gallardo, M.10
-
51
-
-
45849135641
-
The b cell antigen receptor and overexpression of myc can cooperate in the genesis of b cell lymphomas
-
Refaeli Y, Young RM, Turner BC, Duda J, Field KA, Bishop JM. 2008. The B cell antigen receptor and overexpression of MYC can cooperate in the genesis of B cell lymphomas. PLoS Biol 6: e152.
-
(2008)
PLoS Biol
, vol.6
-
-
Refaeli, Y.1
Young, R.M.2
Turner, B.C.3
Duda, J.4
Field, K.A.5
Bishop, J.M.6
-
52
-
-
33646361583
-
Genepattern 2.0
-
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. 2006. GenePattern 2.0. Nat Genet 38: 500-501.
-
(2006)
Nat Genet
, vol.38
, pp. 500-501
-
-
Reich, M.1
Liefeld, T.2
Gould, J.3
Lerner, J.4
Tamayo, P.5
Mesirov, J.P.6
-
53
-
-
84862777104
-
Rna-seq analysis of prostate cancer in the chinese population identifies recurrent gene fusions, cancer-associated long noncoding rnas and aberrant alternative splicings
-
Ren S, Peng Z, Mao JH, Yu Y, Yin C, Gao X, Cui Z, Zhang J, Yi K, XuW, et al. 2012. RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings. Cell Res 22: 806-821.
-
(2012)
Cell Res
, vol.22
, pp. 806-821
-
-
Ren, S.1
Peng, Z.2
Mao, J.H.3
Yu, Y.4
Yin, C.5
Gao, X.6
Cui, Z.7
Zhang, J.8
Yi K, XuW.9
-
54
-
-
0035803371
-
Relation of gene expression phenotype to immunoglobulin mutation genotype in b cell chronic lymphocytic leukemia
-
Rosenwald A, Alizadeh AA, Widhopf G, Simon R, Davis RE, Yu X, Yang L, Pickeral OK, Rassenti LZ, Powell J, et al. 2001. Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia. J Exp Med 194: 1639-1647.
-
(2001)
J Exp Med
, vol.194
, pp. 1639-1647
-
-
Rosenwald, A.1
Alizadeh, A.A.2
Widhopf, G.3
Simon, R.4
Davis, R.E.5
Yu, X.6
Yang, L.7
Pickeral, O.K.8
Rassenti, L.Z.9
Powell, J.10
-
55
-
-
80052322960
-
An emt-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype
-
Shapiro IM, Cheng AW, Flytzanis NC, Balsamo M, Condeelis JS, Oktay MH, Burge CB, Gertler FB. 2011. An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype. PLoS Genet 7: e1002218.
-
(2011)
PLoS Genet
, vol.7
-
-
Shapiro, I.M.1
Cheng, A.W.2
Flytzanis, N.C.3
Balsamo, M.4
Condeelis, J.S.5
Oktay, M.H.6
Burge, C.B.7
Gertler, F.B.8
-
56
-
-
34447560961
-
Analysis of gene expression data using brb-arraytools
-
Simon R, Lam A, Li MC, NganM, Menenzes S, Zhao Y. 2007. Analysis of gene expression data using BRB-ArrayTools. Cancer Inform 3: 11-17.
-
(2007)
Cancer Inform
, vol.3
, pp. 11-17
-
-
Simon, R.1
Lam, A.2
Li, M.C.3
NganM Menenzes, S.4
Zhao, Y.5
-
57
-
-
84876328368
-
Poly(adp-ribosyl)ation links the chromatin remodeler smarca5/snf2h to rnf168-dependent dna damage signaling
-
Smeenk G, Wiegant WW, Marteijn JA, Luijsterburg MS, Sroczynski N, Costelloe T, Romeijn RJ, Pastink A,Mailand N, VermeulenW, et al. 2013. Poly(ADP-ribosyl)ation links the chromatin remodeler SMARCA5/SNF2H to RNF168-dependent DNA damage signaling. J Cell Sci 126: 889-903.
-
(2013)
J Cell Sci
, vol.126
, pp. 889-903
-
-
Smeenk, G.1
Wiegant, W.W.2
Marteijn, J.A.3
Luijsterburg, M.S.4
Sroczynski, N.5
Costelloe, T.6
Romeijn, R.J.7
Pastink, A.8
Mailand, N.9
Vermeulen, W.10
-
58
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al. 2005. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci 102: 15545-15550.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
59
-
-
79551642322
-
Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers
-
Ting DT, Lipson D, Paul S, Brannigan BW, Akhavanfard S, Coffman EJ, Contino G, Deshpande V, Iafrate AJ, Letovsky S, et al. 2011. Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers. Science 331: 593-596.
-
(2011)
Science
, vol.331
, pp. 593-596
-
-
Ting, D.T.1
Lipson, D.2
Paul, S.3
Brannigan, B.W.4
Akhavanfard, S.5
Coffman, E.J.6
Contino, G.7
Deshpande, V.8
Iafrate, A.J.9
Letovsky, S.10
-
60
-
-
0033560701
-
Rna binding specificity of unr, a protein with five cold shock domains
-
Triqueneaux G, Velten M, Franzon P, Dautry F, Jacquemin-Sablon H. 1999. RNA binding specificity of Unr, a protein with five cold shock domains. Nucleic Acids Res 27: 1926-1934.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1926-1934
-
-
Triqueneaux, G.1
Velten, M.2
Franzon, P.3
Dautry, F.4
Jacquemin-Sablon, H.5
-
61
-
-
84874257263
-
Recurrent reciprocal rna chimera involving ypel5 and ppp1cb in chronic lymphocytic leukemia
-
Velusamy T, Palanisamy N, Kalyana-SundaramS, Sahasrabuddhe AA, Maher CA, Robinson DR, Bahler DW, Cornell TT, Wilson TE, Lim MS, et al. 2013. Recurrent reciprocal RNA chimera involving YPEL5 and PPP1CB in chronic lymphocytic leukemia. Proc Natl Acad Sci 110: 3035-3040.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 3035-3040
-
-
Velusamy, T.1
Palanisamy, N.2
Kalyana-Sundaram, S.3
Sahasrabuddhe, A.A.4
Maher, C.A.5
Robinson, D.R.6
Bahler, D.W.7
Cornell, T.T.8
Wilson, T.E.9
Lim, M.S.10
-
62
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. 2008. Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
63
-
-
84855370035
-
Sf3b1 and other novel cancer genes in chronic lymphocytic leukemia
-
Wang L, Lawrence MS,Wan Y, Stojanov P, Sougnez C, Stevenson K,Werner L, Sivachenko A, DeLuca DS, Zhang L, et al. 2011. SF3B1 and other novel cancer genes in chronic lymphocytic leukemia. N Engl J Med 365: 2497-2506.
-
(2011)
N Engl J Med
, vol.365
, pp. 2497-2506
-
-
Wang, L.1
Lawrence, M.S.2
Wan, Y.3
Stojanov, P.4
Sougnez, C.5
Stevenson, K.6
Werner, L.7
Sivachenko, A.8
DeLuca, D.S.9
Zhang, L.10
-
64
-
-
77954182362
-
Consensusclusterplus: A class discovery tool with confidence assessments and item tracking
-
Wilkerson MD, Hayes DN. 2010. ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking. Bioinformatics 26: 1572-1573.
-
(2010)
Bioinformatics
, vol.26
, pp. 1572-1573
-
-
Wilkerson, M.D.1
Hayes, D.N.2
-
65
-
-
80053900941
-
Frequent pathway mutations of splicing machinery in myelodysplasia
-
Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, et al. 2011. Frequent pathway mutations of splicing machinery in myelodysplasia. Nature 478: 64-69.
-
(2011)
Nature
, vol.478
, pp. 64-69
-
-
Yoshida, K.1
Sanada, M.2
Shiraishi, Y.3
Nowak, D.4
Nagata, Y.5
Yamamoto, R.6
Sato, Y.7
Sato-Otsubo, A.8
Kon, A.9
Nagasaki, M.10
-
66
-
-
72949093335
-
From pathogenesis to treatment of chronic lymphocytic leukaemia
-
Zenz T, Mertens D, Kuppers R, Dohner H, Stilgenbauer S. 2009. From pathogenesis to treatment of chronic lymphocytic leukaemia. Nat Rev Cancer 10: 37-50.
-
(2009)
Nat Rev Cancer
, vol.10
, pp. 37-50
-
-
Zenz, T.1
Mertens, D.2
Kuppers, R.3
Dohner, H.4
Stilgenbauer, S.5
-
67
-
-
70449699611
-
Inhibition of proliferation and differentiation and promotion of apoptosis by cyclin l2 in mouse embryonic carcinoma p19 cells
-
Zhuo L, Gong J, Yang R, Sheng Y, Zhou L, Kong X, Cao K. 2009. Inhibition of proliferation and differentiation and promotion of apoptosis by cyclin L2 in mouse embryonic carcinoma P19 cells. Biochem Biophys Res Commun 390: 451-457.
-
(2009)
Biochem Biophys Res Commun
, vol.390
, pp. 451-457
-
-
Zhuo, L.1
Gong, J.2
Yang, R.3
Sheng, Y.4
Zhou, L.5
Kong, X.6
Cao, K.7
|