-
1
-
-
27644433390
-
Low-level analysis of high-density oligonucleotide array data: background, normalization and summarization
-
University of California
-
Bolstad B. Low-level analysis of high-density oligonucleotide array data: background, normalization and summarization. PhD thesis 2004, University of California.
-
(2004)
PhD thesis
-
-
Bolstad, B.1
-
2
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
10.1093/biostatistics/4.2.249, 12925520
-
Irizarry R, Hobbs B, Collin F, Beazer-Barclay Y, Antonellis K, Scherf U, Speed T. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249. 10.1093/biostatistics/4.2.249, 12925520.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249
-
-
Irizarry, R.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.4
Antonellis, K.5
Scherf, U.6
Speed, T.7
-
3
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu Z, Irizarry R, Gentleman R, Martinez-Murillo F, Spencer F. A model-based background adjustment for oligonucleotide expression arrays. Journal of the American Statistical Association 2004, 99(468):909-917.
-
(2004)
Journal of the American Statistical Association
, vol.99
, Issue.468
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
4
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong W. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proceedings of the National Academy of Sciences 2001, 98:31.
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, pp. 31
-
-
Li, C.1
Wong, W.2
-
5
-
-
77953657478
-
Guide to probe logarithmic intensity error (PLIER) estimation
-
Affymetrix
-
Affymetrix Guide to probe logarithmic intensity error (PLIER) estimation. Technical Note 2005, Affymetrix.
-
(2005)
Technical Note
-
-
-
6
-
-
4944232237
-
Combining multiple microarray studies and modeling interstudy variation
-
10.1093/bioinformatics/btg1010, 12855442
-
Choi J, Yu U, Kim S, Yoo O. Combining multiple microarray studies and modeling interstudy variation. Bioinformatics 2003, 19(suppl 1):i84. 10.1093/bioinformatics/btg1010, 12855442.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Choi, J.1
Yu, U.2
Kim, S.3
Yoo, O.4
-
7
-
-
27544492493
-
Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data
-
10.1093/bioinformatics/bti647, 16131522
-
Xu L, Tan A, Naiman D, Geman D, Winslow R. Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data. Bioinformatics 2005, 21(20):3905. 10.1093/bioinformatics/bti647, 16131522.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3905
-
-
Xu, L.1
Tan, A.2
Naiman, D.3
Geman, D.4
Winslow, R.5
-
8
-
-
85047234321
-
Combining results of microarray experiments: a rank aggregation approach
-
DeConde R, Hawley S, Falcon S, Clegg N, Knudsen B, Etzioni R. Combining results of microarray experiments: a rank aggregation approach. Statistical Applications in Genetics and Molecular Biology 2006, 5:15.
-
(2006)
Statistical Applications in Genetics and Molecular Biology
, vol.5
, pp. 15
-
-
DeConde, R.1
Hawley, S.2
Falcon, S.3
Clegg, N.4
Knudsen, B.5
Etzioni, R.6
-
9
-
-
53149135477
-
Key issues in conducting a meta-analysis of gene expression microarray datasets
-
10.1371/journal.pmed.0050184, 2528050, 18767902
-
Ramasamy A, Mondry A, Holmes C, Altman D. Key issues in conducting a meta-analysis of gene expression microarray datasets. PLoS medicine 2008, 5(9):e184. 10.1371/journal.pmed.0050184, 2528050, 18767902.
-
(2008)
PLoS medicine
, vol.5
, Issue.9
-
-
Ramasamy, A.1
Mondry, A.2
Holmes, C.3
Altman, D.4
-
10
-
-
77749291770
-
Frozen robust multiarray analysis (fRMA)
-
10.1093/biostatistics/kxp059, 2830579, 20097884
-
McCall MN, Bolstad BM, Irizarry RA. Frozen robust multiarray analysis (fRMA). Biostatistics 2010, 11(2):242-253. 10.1093/biostatistics/kxp059, 2830579, 20097884.
-
(2010)
Biostatistics
, vol.11
, Issue.2
, pp. 242-253
-
-
McCall, M.N.1
Bolstad, B.M.2
Irizarry, R.A.3
-
11
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
Johnson W, Li C, Rabinovic A. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 2007, 8:118.
-
(2007)
Biostatistics
, vol.8
, pp. 118
-
-
Johnson, W.1
Li, C.2
Rabinovic, A.3
-
12
-
-
34848914038
-
Capturing heterogeneity in gene expression studies by surrogate variable analysis
-
Leek J, Storey J. Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genetics 2007, 3(9):e161.
-
(2007)
PLoS Genetics
, vol.3
, Issue.9
-
-
Leek, J.1
Storey, J.2
-
13
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80, 545600, 15461798
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 2004, 5:R80. 10.1186/gb-2004-5-10-r80, 545600, 15461798.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.H.24
Zhang, J.25
more..
-
14
-
-
29144535372
-
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
-
10.1093/nar/gni179, 1283542, 16284200
-
Dai M, Wang P, Boyd A, Kostov G, Athey B, Jones E, Bunney W, Myers R, Speed T, Akil H, Watson S, Meng F. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic acids research 2005, 33(20):e175. 10.1093/nar/gni179, 1283542, 16284200.
-
(2005)
Nucleic acids research
, vol.33
, Issue.20
-
-
Dai, M.1
Wang, P.2
Boyd, A.3
Kostov, G.4
Athey, B.5
Jones, E.6
Bunney, W.7
Myers, R.8
Speed, T.9
Akil, H.10
Watson, S.11
Meng, F.12
-
15
-
-
33747520366
-
The effect of GeneChip gene definitions on the microarray study of cancers
-
10.1002/bies.20433, 16850407
-
Lu X, Zhang X. The effect of GeneChip gene definitions on the microarray study of cancers. Bioessays 2006, 28(7):739-746. 10.1002/bies.20433, 16850407.
-
(2006)
Bioessays
, vol.28
, Issue.7
, pp. 739-746
-
-
Lu, X.1
Zhang, X.2
-
16
-
-
33847679625
-
Improved precision and accuracy for microarrays using updated probe set definitions
-
10.1186/1471-2105-8-48, 1805763, 17288599
-
Sandberg R, Larsson O. Improved precision and accuracy for microarrays using updated probe set definitions. BMC bioinformatics 2007, 8:48. 10.1186/1471-2105-8-48, 1805763, 17288599.
-
(2007)
BMC bioinformatics
, vol.8
, pp. 48
-
-
Sandberg, R.1
Larsson, O.2
-
17
-
-
55249097671
-
Consolidated strategy for the analysis of microarray spike-in data
-
10.1093/nar/gkn430, 2553586, 18676452
-
McCall MN, Irizarry RA. Consolidated strategy for the analysis of microarray spike-in data. Nucleic Acids Research 2008, 36(17):e108. 10.1093/nar/gkn430, 2553586, 18676452.
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.17
-
-
McCall, M.N.1
Irizarry, R.A.2
-
18
-
-
77956873627
-
Tackling the widespread and critical impact of batch effects in high-throughput data
-
10.1038/nrg2825, 20838408
-
Leek J, Scharpf R, Bravo H, Simcha D, Langmead B, Johnson W, Geman D, Baggerly K, Irizarry R. Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics 2010, 11(10):733-739. 10.1038/nrg2825, 20838408.
-
(2010)
Nature Reviews Genetics
, vol.11
, Issue.10
, pp. 733-739
-
-
Leek, J.1
Scharpf, R.2
Bravo, H.3
Simcha, D.4
Langmead, B.5
Johnson, W.6
Geman, D.7
Baggerly, K.8
Irizarry, R.9
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