메뉴 건너뛰기




Volumn 9, Issue 1, 2014, Pages 66-74

Genome-wide antagonism between 5-hydroxymethylcytosine and DNA methylation in the adult mouse brain

Author keywords

active DNA demethylation; dentate granule neuron; methylome; TET

Indexed keywords


EID: 84893557019     PISSN: 16747984     EISSN: 16747992     Source Type: Journal    
DOI: 10.1007/s11515-014-1295-1     Document Type: Article
Times cited : (25)

References (54)
  • 1
    • 80052933429 scopus 로고    scopus 로고
    • DNA demethylation dynamics
    • Bhutani N, Burns D M, Blau H M (2011). DNA demethylation dynamics. Cell, 146 (6): 866-872.
    • (2011) Cell , vol.146 , Issue.6 , pp. 866-872
    • Bhutani, N.1    Burns, D.M.2    Blau, H.M.3
  • 2
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A (2002). DNA methylation patterns and epigenetic memory. Genes Dev, 16 (1): 6-21.
    • (2002) Genes Dev , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 3
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
    • Booth M J, Branco M R, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S (2012). Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science, 336 (6083): 934-937.
    • (2012) Science , vol.336 , Issue.6083 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3    Oxley, D.4    Krueger, F.5    Reik, W.6    Balasubramanian, S.7
  • 4
    • 83855163995 scopus 로고    scopus 로고
    • Uncovering the role of 5- hydroxymethylcytosine in the epigenome
    • Branco M R, Ficz G, Reik W (2012). Uncovering the role of 5- hydroxymethylcytosine in the epigenome. Nat Rev Genet, 13 (1): 7-13.
    • (2012) Nat Rev Genet , vol.13 , Issue.1 , pp. 7-13
    • Branco, M.R.1    Ficz, G.2    Reik, W.3
  • 6
    • 16444381345 scopus 로고    scopus 로고
    • Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system
    • Feng J, Chang H, Li E, Fan G (2005). Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system. J Neurosci Res, 79 (6): 734-746.
    • (2005) J Neurosci Res , vol.79 , Issue.6 , pp. 734-746
    • Feng, J.1    Chang, H.2    Li, E.3    Fan, G.4
  • 7
    • 77950187447 scopus 로고    scopus 로고
    • Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons
    • Feng J, Zhou Y, Campbell S L, Le T, Li E, Sweatt J D, Silva A J, Fan G (2010). Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons. Nat Neurosci, 13 (4): 423-430.
    • (2010) Nat Neurosci , vol.13 , Issue.4 , pp. 423-430
    • Feng, J.1    Zhou, Y.2    Campbell, S.L.3    Le, T.4    Li, E.5    Sweatt, J.D.6    Silva, A.J.7    Fan, G.8
  • 10
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll M G, Bestor T H (2005). Eukaryotic cytosine methyltransferases. Annu Rev Biochem, 74 (1): 481-514.
    • (2005) Annu Rev Biochem , vol.74 , Issue.1 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 11
    • 0028267714 scopus 로고
    • Expression of DNA methyltransferase gene in mature and immature neurons as well as proliferating cells in mice
    • Goto K, Numata M, Komura J I, Ono T, Bestor T H, Kondo H (1994). Expression of DNA methyltransferase gene in mature and immature neurons as well as proliferating cells in mice. Differentiation, 56 (1-2): 39-44.
    • (1994) Differentiation , vol.56 , Issue.1-2 , pp. 39-44
    • Goto, K.1    Numata, M.2    Komura, J.I.3    Ono, T.4    Bestor, T.H.5    Kondo, H.6
  • 15
    • 80051712275 scopus 로고    scopus 로고
    • Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond
    • Guo J U, Su Y, Zhong C, Ming G L, Song H (2011b). Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond. Cell Cycle, 10 (16): 2662-2668.
    • (2011) Cell Cycle , vol.10 , Issue.16 , pp. 2662-2668
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 16
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo J U, Su Y, Zhong C, Ming G L, Song H (2011c). Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell, 145 (3): 423-434.
    • (2011) Cell , vol.145 , Issue.3 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 19
    • 80054097425 scopus 로고    scopus 로고
    • Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
    • Inoue A, Zhang Y (2011). Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science, 334 (6053): 194.
    • (2011) Science , vol.334 , Issue.6053 , pp. 194
    • Inoue, A.1    Zhang, Y.2
  • 20
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito S, D'Alessio A C, Taranova O V, Hong K, Sowers L C, Zhang Y (2010). Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature, 466 (7310): 1129-1133.
    • (2010) Nature , vol.466 , Issue.7310 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 21
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • Ito S, Shen L, Dai Q, Wu S C, Collins L B, Swenberg J A, He C, Zhang Y (2011). Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science, 333 (6047): 1300-1303.
    • (2011) Science , vol.333 , Issue.6047 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3    Wu, S.C.4    Collins, L.B.5    Swenberg, J.A.6    He, C.7    Zhang, Y.8
  • 22
    • 84884471932 scopus 로고    scopus 로고
    • TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation
    • Kaas G A, Zhong C, Eason D E, Ross D L, Vachhani R V, Ming G L, King J R, Song H, Sweatt J D (2013). TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation. Neuron, 79 (6): 1086-1093.
    • (2013) Neuron , vol.79 , Issue.6 , pp. 1086-1093
    • Kaas, G.A.1    Zhong, C.2    Eason, D.E.3    Ross, D.L.4    Vachhani, R.V.5    Ming, G.L.6    King, J.R.7    Song, H.8    Sweatt, J.D.9
  • 24
    • 84886860116 scopus 로고    scopus 로고
    • TET enzymes, TDG and the dynamics of DNA demethylation
    • Kohli R M, Zhang Y (2013). TET enzymes, TDG and the dynamics of DNA demethylation. Nature, 502 (7472): 472-479.
    • (2013) Nature , vol.502 , Issue.7472 , pp. 472-479
    • Kohli, R.M.1    Zhang, Y.2
  • 25
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis S, Heintz N (2009). The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science, 324 (5929): 929-930.
    • (2009) Science , vol.324 , Issue.5929 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 26
    • 80054994283 scopus 로고    scopus 로고
    • Identification of genetic elements that autonomously determine DNA methylation states
    • Lienert F, Wirbelauer C, Som I, Dean A, Mohn F, Schóbeler D (2011). Identification of genetic elements that autonomously determine DNA methylation states. Nat Genet, 43 (11): 1091-1097.
    • (2011) Nat Genet , vol.43 , Issue.11 , pp. 1091-1097
    • Lienert, F.1    Wirbelauer, C.2    Som, I.3    Dean, A.4    Mohn, F.5    Schóbeler, D.6
  • 28
    • 66849119061 scopus 로고    scopus 로고
    • DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation
    • Ma D K, Guo J U, Ming G L, Song H (2009a). DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation. Cell Cycle, 8 (10): 1526-1531.
    • (2009) Cell Cycle , vol.8 , Issue.10 , pp. 1526-1531
    • Ma, D.K.1    Guo, J.U.2    Ming, G.L.3    Song, H.4
  • 29
    • 67949086673 scopus 로고    scopus 로고
    • Molecular genetic analysis of FGFR1 signalling reveals distinct roles of MAPK and PLCgamma1 activation for self-renewal of adult neural stem cells
    • Ma D K, Ponnusamy K, Song M R, Ming G L, Song H (2009b). Molecular genetic analysis of FGFR1 signalling reveals distinct roles of MAPK and PLCgamma1 activation for self-renewal of adult neural stem cells. Mol Brain, 2 (1): 16.
    • (2009) Mol Brain , vol.2 , Issue.1 , pp. 16
    • Ma, D.K.1    Ponnusamy, K.2    Song, M.R.3    Ming, G.L.4    Song, H.5
  • 31
    • 84871563384 scopus 로고    scopus 로고
    • MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system
    • Mellén M, Ayata P, Dewell S, Kriaucionis S, Heintz N (2012). MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system. Cell, 151 (7): 1417-1430.
    • (2012) Cell , vol.151 , Issue.7 , pp. 1417-1430
    • Mellén, M.1    Ayata, P.2    Dewell, S.3    Kriaucionis, S.4    Heintz, N.5
  • 32
    • 33847614418 scopus 로고    scopus 로고
    • Covalent modification of DNA regulates memory formation
    • Miller C A, Sweatt J D (2007). Covalent modification of DNA regulates memory formation. Neuron, 53 (6): 857-869.
    • (2007) Neuron , vol.53 , Issue.6 , pp. 857-869
    • Miller, C.A.1    Sweatt, J.D.2
  • 33
    • 84878260646 scopus 로고    scopus 로고
    • TETonic shift: biological roles of TET proteins in DNA demethylation and transcription
    • Pastor W A, Aravind L, Rao A (2013). TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat Rev Mol Cell Biol, 14 (6): 341-356.
    • (2013) Nat Rev Mol Cell Biol , vol.14 , Issue.6 , pp. 341-356
    • Pastor, W.A.1    Aravind, L.2    Rao, A.3
  • 45
    • 33847055935 scopus 로고    scopus 로고
    • Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1
    • Valinluck V, Sowers L C (2007). Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1. Cancer Res, 67 (3): 946-950.
    • (2007) Cancer Res , vol.67 , Issue.3 , pp. 946-950
    • Valinluck, V.1    Sowers, L.C.2
  • 47
    • 77956095231 scopus 로고    scopus 로고
    • Active DNA demethylation: many roads lead to Rome
    • Wu S C, Zhang Y (2010). Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol, 11 (9): 607-620.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , Issue.9 , pp. 607-620
    • Wu, S.C.1    Zhang, Y.2
  • 49
    • 84890568163 scopus 로고    scopus 로고
    • Role of Tet1 in erasure of genomic imprinting
    • Yamaguchi S, Shen L, Liu Y, Sendler D, Zhang Y (2013). Role of Tet1 in erasure of genomic imprinting. Nature, 504 (7480): 460-464.
    • (2013) Nature , vol.504 , Issue.7480 , pp. 460-464
    • Yamaguchi, S.1    Shen, L.2    Liu, Y.3    Sendler, D.4    Zhang, Y.5
  • 50
    • 84893624346 scopus 로고    scopus 로고
    • Genome-wide alteration of 5-hydroxymethylcytosine in a mouse model of fragile X-associated tremor/ataxia syndrome
    • Yao B, Lin L, Street R C, Zalewski Z A, Galloway J N, Wu H, Nelson D L, Jin P (2013). Genome-wide alteration of 5-hydroxymethylcytosine in a mouse model of fragile X-associated tremor/ataxia syndrome. Hum Mol Genet, (Oct): 20 (Epub ahead of print).
    • (2013) Hum Mol Genet , pp. 20
    • Yao, B.1    Lin, L.2    Street, R.C.3    Zalewski, Z.A.4    Galloway, J.N.H.5    Nelson, D.L.6    Jin, P.7
  • 52
    • 78649825211 scopus 로고    scopus 로고
    • TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine
    • Zhang H, Zhang X, Clark E, Mulcahey M, Huang S, Shi Y G (2010). TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine. Cell Res, 20 (12): 1390-1393.
    • (2010) Cell Res , vol.20 , Issue.12 , pp. 1390-1393
    • Zhang, H.1    Zhang, X.2    Clark, E.3    Mulcahey, M.4    Huang, S.5    Shi, Y.G.6
  • 54
    • 73349104113 scopus 로고    scopus 로고
    • Active DNA demethylation mediated by DNA glycosylases
    • Zhu J K (2009). Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet, 43 (1): 143-166.
    • (2009) Annu Rev Genet , vol.43 , Issue.1 , pp. 143-166
    • Zhu, J.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.