-
1
-
-
77956230468
-
Including secondary structure, fossils and molecular dating in the centipede tree of life
-
doi:10.1016/j.ympev.2010.06.022. PubMed: 20601003
-
Murienne J, Edgecombe GD, Giribet G (2010) Including secondary structure, fossils and molecular dating in the centipede tree of life. Mol Phylogenet Evol 57: 301-313. doi:10.1016/j.ympev.2010.06.022. PubMed: 20601003.
-
(2010)
Mol Phylogenet Evol
, vol.57
, pp. 301-313
-
-
Murienne, J.1
Edgecombe, G.D.2
Giribet, G.3
-
2
-
-
33846354294
-
Current status of the myriapod class diplopoda (millipedes): Taxonomic diversity and phylogeny
-
DOI 10.1146/annurev.ento.52.111805.090210
-
Sierwald P, Bond JE (2007) Current status of the myriapod class diplopoda (Millipedes): Taxonomic diversity and phylogeny. Annu Rev Entomol 52: 401-420. doi:10.1146/annurev.ento.52.111805.090210. PubMed: 17163800. (Pubitemid 46133577)
-
(2007)
Annual Review of Entomology
, vol.52
, pp. 401-420
-
-
Sierwald, P.1
Bond, J.E.2
-
3
-
-
67349286462
-
Competition between invasive earthworms (Amynthas corticis, Megascolecidae) and native North American millipedes (Pseudopolydesmus erasus, Polydesmidae): Effects on carbon cycling and soil structure
-
doi:10.1016/j.soilbio.2009.03.023
-
Snyder BA, Boots B, Hendrix PF (2009) Competition between invasive earthworms (Amynthas corticis, Megascolecidae) and native North American millipedes (Pseudopolydesmus erasus, Polydesmidae): Effects on carbon cycling and soil structure. Soil Biol Biochem 41: 1442-1449. doi:10.1016/j.soilbio.2009. 03.023.
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 1442-1449
-
-
Snyder, B.A.1
Boots, B.2
Hendrix, P.F.3
-
4
-
-
35549009660
-
A possible phylogenetic signal in milliped chemical defenses: The polydesmidan milliped Leonardesmus injucundus Shelley & Shear secretes p-cresol and lacks a cyanogenic defense (Diplopoda, Polydesmida, Nearctodesmidae)
-
DOI 10.1016/j.bse.2007.01.005, PII S0305197807000099
-
Shear W, Jones T, Miras H (2007) A possible phylogenetic signal in milliped chemical defenses: The polydesmidan milliped Leonardesmus injucundus Shelley & Shear secretes p-cresol and lacks a cyanogenic defense (Diplopoda, Polydesmida, Nearctodesmidae). Biochem Syst Ecol 35: 838-842. doi:10.1016/j.bse.2007.01.005. (Pubitemid 350018976)
-
(2007)
Biochemical Systematics and Ecology
, vol.35
, Issue.12
, pp. 838-842
-
-
Shear, W.A.1
Jones, T.H.2
Miras, H.M.3
-
5
-
-
84893375427
-
Chemical defense of a troglobiont millipede, Tetracion jonesi Hoffman (Diplopoda, Callipodida, Abacionidae)
-
doi:10.1163/187525410X12578602960588
-
Shear WA, McPherson IS, Jones TH, Loria SF, Zigler KS (2010) Chemical defense of a troglobiont millipede, Tetracion jonesi Hoffman (Diplopoda, Callipodida, Abacionidae). International J of Myriapology 3: 153-158. doi:10.1163/187525410X12578602960588.
-
(2010)
International J of Myriapology
, vol.3
, pp. 153-158
-
-
Shear, W.A.1
McPherson, I.S.2
Jones, T.H.3
Loria, S.F.4
Zigler, K.S.5
-
6
-
-
79959926287
-
Atlas of Myriapod Biogeography. I. Indigenous Ordinal and Supra-Ordinal Distributions in the Diplopoda: Perspectives on Taxon Origins and Ages, and a Hypothesis on the Origin and Early Evolution of the Class
-
Shelley RM, Golovatch SI (2011) Atlas of Myriapod Biogeography. I. Indigenous Ordinal and Supra-Ordinal Distributions in the Diplopoda: Perspectives on Taxon Origins and Ages, and a Hypothesis on the Origin and Early Evolution of the Class. Insecta Mundi: 1-134.
-
(2011)
Insecta Mundi
, pp. 1-134
-
-
Shelley, R.M.1
Golovatch, S.I.2
-
8
-
-
80052310753
-
How Many Species Are There Earth and Ocean?
-
Mora C, Tittensor DP, Adl; S, Simpson AGB, Worm B (2011). How Many Species Are There Earth and Ocean? PLoS Biology 9: e1001127
-
(2011)
PLoS Biology
, vol.9
-
-
Mora, C.1
Tittensor, D.P.2
Adl, S.3
Simpson, A.G.B.4
Worm, B.5
-
9
-
-
0346462945
-
Morphology and taxonomy of Paleozoic millipedes (Diplopoda: Chilognatha: Archipolypoda) from Scotland
-
Wilson H, Anderson L (2004) Morphology and taxonomy of Paleozoic millipedes (Diplopoda : Chilognatha : Archipolypoda) from Scotland. J Paleontol 78: 169-184. doi:10.1666/0022-3360(2004)078. (Pubitemid 38092734)
-
(2004)
Journal of Paleontology
, vol.78
, Issue.1
, pp. 169-184
-
-
Wilson, H.M.1
Anderson, L.I.2
-
11
-
-
77956410686
-
Phylogeny of the millipede order Spirobolida (Arthropoda: Diplopoda: Helminthomorpha)
-
doi:10.1111/j.1096-0031.2009.00303.x
-
Pitz KM, Sierwald P (2010) Phylogeny of the millipede order Spirobolida (Arthropoda: Diplopoda: Helminthomorpha). Cladistics 26: 497-525. doi:10.1111/j.1096-0031.2009.00303.x.
-
(2010)
Cladistics
, vol.26
, pp. 497-525
-
-
Pitz, K.M.1
Sierwald, P.2
-
12
-
-
0035536905
-
A phylogenetic analysis of Myriapoda (Arthropoda) using two nuclear protein-encoding genes
-
Regier J, Shultz J (2001) A phylogenetic analysis of Myriapoda (Arthropoda) using two nuclear protein-encoding genes. Zoological Journal of The Linnean Society-London 132: 469-486
-
(2001)
Zoological Journal of the Linnean Society-London
, vol.132
, pp. 469-486
-
-
Regier, J.1
Shultz, J.2
-
13
-
-
9744246914
-
Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes
-
DOI 10.1016/j.ympev.2004.09.005, PII S1055790304002842
-
Regier JC, Wilson HM, Shultz JW (2005) Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes. Mol Phylogenet Evol 34: 147-158. doi:10.1016/j.ympev.2004.09.005. PubMed: 15579388. (Pubitemid 39584200)
-
(2005)
Molecular Phylogenetics and Evolution
, vol.34
, Issue.1
, pp. 147-158
-
-
Regier, J.C.1
Wilson, H.M.2
Shultz, J.W.3
-
14
-
-
0035989017
-
Cryptic speciation in the Anadenobolus excisus millipede species complex on the Island of Jamaica
-
Bond JE, Sierwald P (2002) Cryptic speciation in the Anadenobolus excisus millipede species complex on the Island of Jamaica. Evolution 56: 1123-1135. doi:10.1554/0014-3820(2002)056[1123:CSITAE]2.0.CO;2. PubMed: 12144014. (Pubitemid 34792109)
-
(2002)
Evolution
, vol.56
, Issue.6
, pp. 1123-1135
-
-
Bond, J.E.1
Sierwald, P.2
-
15
-
-
33750952290
-
Phylogenetic systematics of the colorful, cyanide-producing millipedes of Appalachia (Polydesmida, Xystodesmidae, Apheloriini) using a total evidence Bayesian approach
-
DOI 10.1016/j.ympev.2006.05.043, PII S1055790306002259
-
Marek PE, Bond JE (2006) Phylogenetic systematics of the colorful, cyanide-producing millipedes of Appalachia (Polydesmida, Xystodesmidae, Apheloriini) using a total evidence Bayesian approach. Mol Phylogenet Evol 41: 704-729. doi:10.1016/j.ympev.2006.05.043. PubMed: 16876439. (Pubitemid 44739325)
-
(2006)
Molecular Phylogenetics and Evolution
, vol.41
, Issue.3
, pp. 704-729
-
-
Marek, P.E.1
Bond, J.E.2
-
16
-
-
35348899577
-
A reassessment of apheloriine millipede phytogeny: Additional taxa, Bayesian inference, and direct optimization (Polydesmida: Xystodesmidae)
-
Marek PE, Bond JE (2007) A reassessment of apheloriine millipede phylogeny: additional taxa, Bayesian inference, and direct optimization (Polydesmida : Xystodesmidae). Zootaxa: 27-39. (Pubitemid 47593972)
-
(2007)
Zootaxa
, Issue.1610
, pp. 27-39
-
-
Marek, P.E.1
Bond, J.E.2
-
17
-
-
67649852602
-
A Mullerian mimicry ring in Appalachian millipedes
-
doi:10.1073/pnas.0810408106. PubMed: 19487663
-
Marek PE, Bond JE (2009) A Mullerian mimicry ring in Appalachian millipedes. Proc Natl Acad Sci U S A 106: 9755-9760. doi:10.1073/pnas. 0810408106. PubMed: 19487663.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9755-9760
-
-
Marek, P.E.1
Bond, J.E.2
-
18
-
-
61849134527
-
Pleistocene glacial refugia across the Appalachian Mountains and coastal plain in the millipede genus Narceus: Evidence from population genetic, phylogeographic, and paleoclimatic data
-
doi:10.1186/1471-2148-9-25. PubMed: 19183468
-
Walker MJ, Stockman AK, Marek PE, Bond JE (2009) Pleistocene glacial refugia across the Appalachian Mountains and coastal plain in the millipede genus Narceus: Evidence from population genetic, phylogeographic, and paleoclimatic data. BMC Evol Biol 9: 25. doi:10.1186/1471-2148-9-25. PubMed: 19183468.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 25
-
-
Walker, M.J.1
Stockman, A.K.2
Marek, P.E.3
Bond, J.E.4
-
19
-
-
82755186973
-
Mountain Refugia Play a Role in Soil Arthropod Speciation on Madagascar: A Case Study of the Endemic Giant Fire-Millipede Genus Aphistogoniulus
-
doi:10.1371/journal.pone.0028035. PubMed: 22162998
-
Wesener T, Raupach MJ, Decker P (2011) Mountain Refugia Play a Role in Soil Arthropod Speciation on Madagascar: A Case Study of the Endemic Giant Fire-Millipede Genus Aphistogoniulus. PLOS ONE 6: e28035. doi:10.1371/journal. pone.0028035. PubMed: 22162998.
-
(2011)
PLOS ONE
, vol.6
-
-
Wesener, T.1
Raupach, M.J.2
Decker, P.3
-
20
-
-
70350439629
-
A first phylogenetic analysis of Giant Pill-Millipedes (Diplopoda: Sphaerotheriida), a new model Gondwanan taxon, with special emphasis on island gigantism
-
doi:10.1111/j.1096-0031.2009.00267.x
-
Wesener T, VandenSpiegel D (2009) A first phylogenetic analysis of Giant Pill-Millipedes (Diplopoda: Sphaerotheriida), a new model Gondwanan taxon, with special emphasis on island gigantism. Cladistics 25: 545-573. doi:10.1111/j.1096-0031.2009.00267.x.
-
(2009)
Cladistics
, vol.25
, pp. 545-573
-
-
Wesener, T.1
VandenSpiegel, D.2
-
21
-
-
42549141319
-
Complex copulatory behavior and the proximate effect of genital and body size differences on mechanical reproductive isolation in the millipede genus Parafontaria
-
DOI 10.1086/587075
-
Tanabe T, Sota T (2008) Complex copulatory behavior and the proximate effect of genital and body size differences on mechanical reproductive isolation in the millipede genus Parafontaria. Am Nat 171: 692-699. doi:10.1086/587075. PubMed: 18419575. (Pubitemid 351589851)
-
(2008)
American Naturalist
, vol.171
, Issue.5
, pp. 692-699
-
-
Tanabe, T.1
Sota, T.2
-
22
-
-
77649201037
-
Multiple speciation events in an arthropod with divergent evolution in sexual morphology
-
doi:10.1098/rspb.2009.1822
-
Sota T, Tanabe T (2010) Multiple speciation events in an arthropod with divergent evolution in sexual morphology. Proc R Soc Lond B-Biol Sci 277: 689-696. doi:10.1098/rspb.2009.1822.
-
(2010)
Proc R Soc Lond B-Biol Sci
, vol.277
, pp. 689-696
-
-
Sota, T.1
Tanabe, T.2
-
23
-
-
84859438410
-
Evidence for stabilizing selection and slow divergent evolution of male genitalia in a millipede (Antichiropus variabilis)
-
doi:10.1111/j.1558-5646.2011.01509.x. PubMed: 22486694
-
Wojcieszek JM, Simmons LW (2012) Evidence for stabilizing selection and slow divergent evolution of male genitalia in a millipede (Antichiropus variabilis). Evolution 66 (4): 1138-1153. doi:10.1111/j.1558-5646.2011.01509.x. PubMed: 22486694.
-
(2012)
Evolution
, vol.66
, Issue.4
, pp. 1138-1153
-
-
Wojcieszek, J.M.1
Simmons, L.W.2
-
24
-
-
81255149161
-
Phylogenetic relationships in the millipede family Julidae
-
doi:10.1111/j.1096-0031.2011.00360.x
-
Enghoff H, Petersen G, Seberg O (2011) Phylogenetic relationships in the millipede family Julidae. Cladistics 27: 606-616. doi:10.1111/j.1096-0031.2011. 00360.x.
-
(2011)
Cladistics
, vol.27
, pp. 606-616
-
-
Enghoff, H.1
Petersen, G.2
Seberg, O.3
-
25
-
-
9244246975
-
A revised, annotated, family-level classification of the Diplopoda
-
Shelley RM (2003) A revised, annotated, family-level classification of the Diplopoda. Arthropoda Selecta 11: 187-207.
-
(2003)
Arthropoda Selecta
, vol.11
, pp. 187-207
-
-
Shelley, R.M.1
-
26
-
-
1142288610
-
Introductory note on the families of Diplopoda
-
OF CookGN Collins, The Craspedosomatidae of North America
-
Cook O (1895) Introductory note on the families of Diplopoda. In OF CookGN Collins, The Craspedosomatidae of North America. Annuals of The New York Academy of Sciences 9: 1-7
-
(1895)
Annuals of the New York Academy of Sciences
, vol.9
, pp. 1-7
-
-
Cook, O.1
-
27
-
-
84870324696
-
Class Diplopoda de Blainville in Gervais
-
Z-Q Zhang. Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness
-
Shear WA (2011) Class Diplopoda de Blainville in Gervais. In: Z-Q Zhang. Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness. Zootaxa: 159-164. p. 1844.
-
(2011)
Zootaxa
-
-
Shear, W.A.1
-
28
-
-
0038066510
-
Millipede phylogeny revisited in the light of the enigmatic order Siphoniulida
-
DOI 10.1046/j.1439-0469.2003.00202.x
-
Sierwald P, Shear W, Shelley R, Bond J (2003) Millipede phylogeny revisited in the light of the enigmatic order Siphoniulida. J Zool Syst Evol Res 41: 87-99. doi:10.1046/j.1439-0469.2003.00202.x. (Pubitemid 36551334)
-
(2003)
Journal of Zoological Systematics and Evolutionary Research
, vol.41
, Issue.2
, pp. 87-99
-
-
Sierwald, P.1
Shear, W.A.2
Shelley, R.M.3
Bond, J.E.4
-
30
-
-
72249094760
-
Evolution of genitalia: Theories, evidence, and new directions
-
doi:10.1007/s10709-009-9358-y. PubMed: 19308664
-
Eberhard WG (2010) Evolution of genitalia: theories, evidence, and new directions. Genetica 138: 5-18. doi:10.1007/s10709-009-9358-y. PubMed: 19308664.
-
(2010)
Genetica
, vol.138
, pp. 5-18
-
-
Eberhard, W.G.1
-
31
-
-
5444258894
-
Rapid divergent evolution of sexual morphology: Comparative tests of antagonistic coevolution and traditional female choice
-
doi:10.1554/04-143. PubMed: 15521454
-
Eberhard WG (2004) Rapid divergent evolution of sexual morphology: Comparative tests of antagonistic coevolution and traditional female choice. Evolution 58: 1947-1970. doi:10.1554/04-143. PubMed: 15521454.
-
(2004)
Evolution
, vol.58
, pp. 1947-1970
-
-
Eberhard, W.G.1
-
32
-
-
84880295812
-
Arthropod Phylogenetics in Light of Three Novel Millipede (Myriapoda: Diplopoda) Mitochondrial Genomes with Comments on the Appropriateness of Mitochondrial Genome Sequence Data for Inferring Deep Level Relationships
-
doi:10.1371/journal.pone.0068005. PubMed: 23869209
-
Brewer MS, Swafford L, Spruill CL, Bond JE (2013) Arthropod Phylogenetics in Light of Three Novel Millipede (Myriapoda: Diplopoda) Mitochondrial Genomes with Comments on the Appropriateness of Mitochondrial Genome Sequence Data for Inferring Deep Level Relationships. PLOS ONE 8: e68005. doi:10.1371/journal. pone.0068005. PubMed: 23869209.
-
(2013)
PLOS ONE
, vol.8
-
-
Brewer, M.S.1
Swafford, L.2
Spruill, C.L.3
Bond, J.E.4
-
33
-
-
84865291420
-
Phylogenomic Resolution of Paleozoic Divergences in Harvestmen (Arachnida, Opiliones) via Analysis of Next-Generation Transcriptome Data
-
doi:10.1371/journal.pone.0042888. PubMed: 22936998
-
Hedin M, Starrett J, Akhter S, Schönhofer AL, Shultz JW (2012) Phylogenomic Resolution of Paleozoic Divergences in Harvestmen (Arachnida, Opiliones) via Analysis of Next-Generation Transcriptome Data. PLOS ONE 7: e42888. doi:10.1371/journal.pone.0042888. PubMed: 22936998.
-
(2012)
PLOS ONE
, vol.7
-
-
Hedin, M.1
Starrett, J.2
Akhter, S.3
Schönhofer, A.L.4
Shultz, J.W.5
-
34
-
-
73949154587
-
A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)
-
doi:10.1016/j.ympev.2009.08.014. PubMed: 19695333
-
Roeding F, Borner J, Kube M, Klages S, Reinhardt R et al. (2009) A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator). Mol Phylogenet Evol 53: 826-834. doi:10.1016/j.ympev.2009.08.014. PubMed: 19695333.
-
(2009)
Mol Phylogenet Evol
, vol.53
, pp. 826-834
-
-
Roeding, F.1
Borner, J.2
Kube, M.3
Klages, S.4
Reinhardt, R.5
-
35
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
doi:10.1038/nature10526. PubMed: 22031330
-
Smith SA, Wilson NG, Goetz FE, Feehery C, Andrade SCS et al. (2011) Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 480: 364-367. doi:10.1038/nature10526. PubMed: 22031330.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
Wilson, N.G.2
Goetz, F.E.3
Feehery, C.4
Andrade, S.C.S.5
-
36
-
-
73249118931
-
Resolving the evolution of extant and extinct ruminants with highthroughput phylogenomics
-
doi:10.1073/pnas.0904691106. PubMed: 19846765
-
Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP et al. (2009) Resolving the evolution of extant and extinct ruminants with highthroughput phylogenomics. Proc Natl Acad Sci U S A 106: 18644- 18649. doi:10.1073/pnas. 0904691106. PubMed: 19846765.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 18644-18649
-
-
Decker, J.E.1
Pires, J.C.2
Conant, G.C.3
McKay, S.D.4
Heaton, M.P.5
-
37
-
-
79958795493
-
-
Available: Accessed 2012
-
Hannon G (2012) FASTX Toolkit. Available: http://hannonlab.cshl.edu/ fastx-toolkit/index.html. Accessed 2012
-
(2012)
FASTX Toolkit
-
-
Hannon, G.1
-
38
-
-
84893390953
-
-
Available: Accessed 2012
-
Fast QC (2012) FastQC. Available: http://www.bioinformatics.babraham.ac. uk/projects/fastqc/. Accessed 2012
-
(2012)
FastQC
-
-
Fast, Q.C.1
-
39
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
doi:10.1038/nbt.1883. PubMed: 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652. doi:10.1038/nbt.1883. PubMed: 21572440.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
-
40
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
DOI 10.1093/bioinformatics/btm071
-
Parra G, Bradnam K, Korf I (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23: 1061-1067. doi:10.1093/bioinformatics/btm071. PubMed: 17332020. (Pubitemid 47050556)
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
41
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
doi:10.1186/1471-2105-4-41. PubMed: 12969510
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41. doi:10.1186/1471-2105-4-41. PubMed: 12969510.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
42
-
-
68849131258
-
HaMStR: Profile hidden Markov model based search for orthologs in ESTs
-
doi:10.1186/1471-2148-9-157. PubMed: 19586527
-
Ebersberger I, Strauss S, Haeseler, von A (2009) HaMStR: Profile hidden Markov model based search for orthologs in ESTs. BMC Evol Biol 9: 157. doi:10.1186/1471-2148-9-157. PubMed: 19586527.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 157
-
-
Ebersberger, I.1
Strauss, S.2
Haeseler Von, A.3
-
43
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066. doi:10.1093/nar/gkf436. PubMed: 12136088. (Pubitemid 34851225)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
44
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
-
Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298. doi:10.1093/bib/bbn013. PubMed: 18372315. (Pubitemid 351890825)
-
(2008)
Briefings in Bioinformatics
, vol.9
, Issue.4
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
45
-
-
34248188251
-
SCaFoS: A tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
-
doi:10.1186/1471-2148-7-S1-S2. PubMed: 17288575
-
Roure B, Rodriguez-Ezpeleta N, Philippe H (2007) SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics. BMC Evol Biol 7: S2. doi:10.1186/1471-2148-7-S1-S2. PubMed: 17288575.
-
(2007)
BMC Evol Biol
, vol.7
-
-
Roure, B.1
Rodriguez-Ezpeleta, N.2
Philippe, H.3
-
46
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
doi:10.1093/oxfordjournals.molbev.a026334. PubMed: 10742046
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552. doi:10.1093/oxfordjournals.molbev.a026334. PubMed: 10742046.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
47
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
DOI 10.1080/10635150701472164, PII 780704285
-
Talavera G, Castresana J (2007) Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments. Syst Biol 56: 564-577. doi:10.1080/10635150701472164. PubMed: 17654362. (Pubitemid 47171631)
-
(2007)
Systematic Biology
, vol.56
, Issue.4
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
48
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
doi: 10.1016/S0168-9525(00)02024-2. PubMed: 10827456
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: The European molecular biology open software suite. Trends Genet 16: 276-277. doi: 10.1016/S0168- 9525(00)02024-2. PubMed: 10827456.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
49
-
-
77950448058
-
Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees
-
Kueck P, Meusemann K, Dambach J, Thormann B, Reumont von BM, et al. (2010) Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees. Frontiers in Zoology 7 (10)
-
(2010)
Frontiers in Zoology
, vol.7
, Issue.10
-
-
Kueck, P.1
Meusemann, K.2
Dambach, J.3
Thormann, B.4
Von Reumont, B.M.5
-
50
-
-
84893393589
-
-
Available: Accessed 2012
-
Kuck P (2012) ALICUT. Available: http://www.zfmk.de/web/ZFMK-Mitarbeiter/ KckPatrick/Projekte/index.de.html. Accessed 2012
-
(2012)
ALICUT
-
-
Kuck, P.1
-
51
-
-
77954427522
-
FASconCAT: Convenient handling of data matrices
-
doi:10.1016/j.ympev.2010.04.024. PubMed: 20416383
-
Kück P, Meusemann K (2010) FASconCAT: Convenient handling of data matrices. Mol Phylogenet Evol 56: 1115-1118. doi:10.1016/j.ympev.2010.04.024. PubMed: 20416383.
-
(2010)
Mol Phylogenet Evol
, vol.56
, pp. 1115-1118
-
-
Kück, P.1
Meusemann, K.2
-
52
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
doi:10.1093/bioinformatics/btl446. PubMed: 16928733
-
Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. doi:10.1093/bioinformatics/btl446. PubMed: 16928733.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
53
-
-
69949126557
-
PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
-
doi:10.1093/bioinformatics/btp368. PubMed: 19535536
-
Lartillot N, Lepage T, Blanquart S (2009) PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25: 2286-2288. doi:10.1093/bioinformatics/btp368. PubMed: 19535536.
-
(2009)
Bioinformatics
, vol.25
, pp. 2286-2288
-
-
Lartillot, N.1
Lepage, T.2
Blanquart, S.3
-
54
-
-
12944280761
-
-
HG Bronn's Klassen Ordnungen Tierreichs 5. 2. II. Leipzig, Germany: Akademie Verlag
-
Verhoeff KW (1932) Klasse Diplopoda II. HG Bronn's Klassen Ordnungen Tierreichs 5. 2. II. Leipzig, Germany: Akademie Verlag pp. 1073-2084
-
(1932)
Klasse Diplopoda II
, pp. 1073-2084
-
-
Verhoeff, K.W.1
-
55
-
-
21344476091
-
Anamorphosis in millipedes (Diplopoda) - The present state of knowledge with some developmental and phylogenetic considerations
-
Enghoff H, Dohle W, Blower JG (1993) Anamorphosis in millipedes (Diplopoda) - the present state of knowledge with some developmental and phylogenetic considerations. Zoological Journal of The Linnean Society-London 109: 103-234
-
(1993)
Zoological Journal of the Linnean Society-London
, vol.109
, pp. 103-234
-
-
Enghoff, H.1
Dohle, W.2
Blower, J.G.3
-
56
-
-
67649327176
-
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
-
doi:10.1093/molbev/msp077. PubMed: 19377059
-
Price MN, Dehal PS, Arkin AP (2009) FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix. Mol Biol Evol 26: 1641-1650. doi:10.1093/molbev/msp077. PubMed: 19377059.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
57
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
doi:10.1371/journal.pone.0009490. PubMed: 20224823
-
Price MN, Dehal PS, Arkin AP (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLOS ONE 5: e9490. doi:10.1371/journal.pone.0009490. PubMed: 20224823.
-
(2010)
PLOS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
58
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M, CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
-
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
60
-
-
33746450766
-
Juliformian millipedes from the Lower Devonian of euramerica: Implications for the timing of millipede cladogenesis in the Paleozoic
-
doi:10.1666/0022-3360(2006)80[638:JMFTLD]2.0.CO;2
-
Wilson HM (2006) Juliformian millipedes from the Lower Devonian of euramerica: Implications for the timing of millipede cladogenesis in the Paleozoic. J Paleontol 80: 638-649. doi:10.1666/0022-3360(2006)80[638:JMFTLD]2. 0.CO;2.
-
(2006)
J Paleontol
, vol.80
, pp. 638-649
-
-
Wilson, H.M.1
-
61
-
-
80055121128
-
Dating the arthropod tree based on large-scale transcriptome data
-
doi:10.1016/j.ympev.2011.09.003. PubMed: 21945788
-
Rehm P, Borner J, Meusemann K, Reumont von BM, Simon S, et al (2011) Dating the arthropod tree based on large-scale transcriptome data. Mol Phylogenet Evol 61: 880-887. doi:10.1016/j.ympev.2011.09.003. PubMed: 21945788.
-
(2011)
Mol Phylogenet Evol
, vol.61
, pp. 880-887
-
-
Rehm, P.1
Borner, J.2
Meusemann, K.3
Von Reumont, B.M.4
Simon, S.5
-
62
-
-
33344465800
-
Relaxed Phylogenetics and Dating with Confidence
-
doi:10.1371/journal.pbio.0040088. PubMed: 16683862
-
Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006) Relaxed Phylogenetics and Dating with Confidence. PLOS Biol 4: e88. doi:10.1371/journal.pbio.0040088. PubMed: 16683862.
-
(2006)
PLOS Biol
, vol.4
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
Rambaut, A.4
-
63
-
-
58249100073
-
Is a new and general theory of molecular systematics emerging?
-
doi:10.1111/j.1558-5646.2008.00549.x. PubMed: 19146594
-
Edwards SV (2009) Is a new and general theory of molecular systematics emerging? Evolution 63: 1-19. doi:10.1111/j.1558-5646.2008.00549.x. PubMed: 19146594.
-
(2009)
Evolution
, vol.63
, pp. 1-19
-
-
Edwards, S.V.1
-
64
-
-
77958144939
-
A Phylogenomic Approach to Resolve the Arthropod Tree of Life
-
doi:10.1093/molbev/msq130. PubMed: 20534705
-
Meusemann K, Reumont von BM, Simon S, Roeding F, Strauss S, et al (2010) A Phylogenomic Approach to Resolve the Arthropod Tree of Life. Mol Biol Evol 27: 2451-2464. doi:10.1093/molbev/msq130. PubMed: 20534705.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2451-2464
-
-
Meusemann, K.1
Von Reumont, B.M.2
Simon, S.3
Roeding, F.4
Strauss, S.5
-
65
-
-
80053132393
-
Phylogenomics reveals deep molluscan relationships
-
doi:10.1038/nature10382. PubMed: 21892190
-
Kocot KM, Cannon JT, Todt C, Citarella MR, Kohn AB et al. (2011) Phylogenomics reveals deep molluscan relationships. Nature 477: 452-456. doi:10.1038/nature10382. PubMed: 21892190.
-
(2011)
Nature
, vol.477
, pp. 452-456
-
-
Kocot, K.M.1
Cannon, J.T.2
Todt, C.3
Citarella, M.R.4
Kohn, A.B.5
-
67
-
-
70349485162
-
A synopsis of the milliped genus Brachycybe Wood, 1864 (Platydesmida: Andrognathidae)
-
Shelley R, McAllister C, Tanabe T (2005) A synopsis of the milliped genus Brachycybe Wood, 1864 (Platydesmida: Andrognathidae). Fragmenta Faunistica 48: 137-166.
-
(2005)
Fragmenta Faunistica
, vol.48
, pp. 137-166
-
-
Shelley, R.1
McAllister, C.2
Tanabe, T.3
-
68
-
-
67650825174
-
Spinnerets in the milliped order Polydesmida, and the phylogenetic significance of spinnerets in millipeds (Diplopoda)
-
doi:10.1163/187525408X395904
-
Shear WA (2008) Spinnerets in the milliped order Polydesmida, and the phylogenetic significance of spinnerets in millipeds (Diplopoda). International J of Myriapodology 1: 123-146. doi:10.1163/187525408X395904.
-
(2008)
International J of Myriapodology
, vol.1
, pp. 123-146
-
-
Shear, W.A.1
-
70
-
-
82255195530
-
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
-
doi:10.1126/science.1206375. PubMed: 22116879
-
Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D et al. (2011) The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals. Science 334: 1091-1097. doi:10.1126/science.1206375. PubMed: 22116879.
-
(2011)
Science
, vol.334
, pp. 1091-1097
-
-
Erwin, D.H.1
Laflamme, M.2
Tweedt, S.M.3
Sperling, E.A.4
Pisani, D.5
-
71
-
-
17844393056
-
Occurrence of the milliped Sinocallipus simplipodicus Zhang, 1993 in Laos, with reviews of the Southeast Asian and global callipodidan faunas, and remarks on the phylogenetic position of the order (Callipodida: Sinocallipodidea: Sinocallipodidae)
-
Shear WA, Shelley RM, Heatwole H (2003) Occurrence of the milliped Sinocallipus simplipodicus Zhang, 1993 in Laos, with reviews of the Southeast Asian and global callipodidan faunas, and remarks on the phylogenetic position of the order (Callipodida: Sinocallipodidea: Sinocallipodidae). Zootaxa 365: 1-20.
-
(2003)
Zootaxa
, vol.365
, pp. 1-20
-
-
Shear, W.A.1
Shelley, R.M.2
Heatwole, H.3
-
72
-
-
77950551889
-
The geological record and phylogeny of the Myriapoda
-
doi:10.1016/j.asd.2009.11.002. PubMed: 19944188
-
Shear WA, Edgecombe GD (2010) The geological record and phylogeny of the Myriapoda. Arthropod Struct Dev 39: 174-190. doi:10.1016/j.asd.2009.11.002. PubMed: 19944188.
-
(2010)
Arthropod Struct Dev
, vol.39
, pp. 174-190
-
-
Shear, W.A.1
Edgecombe, G.D.2
-
73
-
-
77950131159
-
First evidence for locomotion in the Ediacara biota from the 565 Ma Mistaken Point Formation, Newfoundland
-
doi:10.1130/G30368.1
-
Liu AG, Mcllroy D, Brasier MD (2010) First evidence for locomotion in the Ediacara biota from the 565 Ma Mistaken Point Formation, Newfoundland. Geology 38: 123-126. doi:10.1130/G30368.1.
-
(2010)
Geology
, vol.38
, pp. 123-126
-
-
Liu, A.G.1
Mcllroy, D.2
Brasier, M.D.3
|