메뉴 건너뛰기




Volumn 111, Issue 3, 2014, Pages

Information transfer by leaky, heterogeneous, protein kinase signaling systems

Author keywords

Biomolecular networks; Cell sensing; Mapk signaling; Mutual information; Ultrasensitivity

Indexed keywords

PROTEIN KINASE; MITOGEN ACTIVATED PROTEIN KINASE;

EID: 84892937483     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1314446111     Document Type: Article
Times cited : (86)

References (47)
  • 1
    • 34249850790 scopus 로고    scopus 로고
    • Noisy information processing through transcriptional regulation
    • Libby E, Perkins TJ, Swain PS (2007) Noisy information processing through transcriptional regulation. Proc Natl Acad Sci USA 104(17):7151-7156.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.17 , pp. 7151-7156
    • Libby, E.1    Perkins, T.J.2    Swain, P.S.3
  • 2
    • 71449096836 scopus 로고    scopus 로고
    • Strategies for cellular decision-making
    • Perkins TJ, Swain PS (2009) Strategies for cellular decision-making. Mol Syst Biol 5:326.
    • (2009) Mol Syst Biol , vol.5 , pp. 326
    • Perkins, T.J.1    Swain, P.S.2
  • 3
    • 79952638264 scopus 로고    scopus 로고
    • Cellular decision making and biological noise: From microbes to mammals
    • Balázsi G, van Oudenaarden A, Collins JJ (2011) Cellular decision making and biological noise: From microbes to mammals. Cell 144(6):910-925.
    • (2011) Cell , vol.144 , Issue.6 , pp. 910-925
    • Balázsi, G.1    Van Oudenaarden, A.2    Collins, J.J.3
  • 4
    • 80054841161 scopus 로고    scopus 로고
    • Information transduction capacity of noisy biochemical signaling networks
    • Cheong R, Rhee A, Wang CJ, Nemenman I, Levchenko A (2011) Information transduction capacity of noisy biochemical signaling networks. Science 334(6054):354-358.
    • (2011) Science , vol.334 , Issue.6054 , pp. 354-358
    • Cheong, R.1    Rhee, A.2    Wang, C.J.3    Nemenman, I.4    Levchenko, A.5
  • 5
    • 84861986448 scopus 로고    scopus 로고
    • Challenges ahead in signal transduction: MAPK as an example
    • Kiel C, Serrano L (2012) Challenges ahead in signal transduction: MAPK as an example. Curr Opin Biotechnol 23(3):305-314.
    • (2012) Curr Opin Biotechnol , vol.23 , Issue.3 , pp. 305-314
    • Kiel, C.1    Serrano, L.2
  • 6
    • 33845257870 scopus 로고    scopus 로고
    • Variability and memory of protein levels in human cells
    • Sigal A, et al. (2006) Variability and memory of protein levels in human cells. Nature 444(7119):643-646.
    • (2006) Nature , vol.444 , Issue.7119 , pp. 643-646
    • Sigal, A.1
  • 7
    • 50149090966 scopus 로고    scopus 로고
    • Variability and robustness in T cell activation from regulated heterogeneity in protein levels
    • Feinerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G (2008) Variability and robustness in T cell activation from regulated heterogeneity in protein levels. Science 321(5892):1081-1084.
    • (2008) Science , vol.321 , Issue.5892 , pp. 1081-1084
    • Feinerman, O.1    Veiga, J.2    Dorfman, J.R.3    Germain, R.N.4    Altan-Bonnet, G.5
  • 8
    • 66249136447 scopus 로고    scopus 로고
    • Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis
    • Spencer SL, Gaudet S, Albeck JG, Burke JM, Sorger PK (2009) Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature 459(7245):428-432.
    • (2009) Nature , vol.459 , Issue.7245 , pp. 428-432
    • Spencer, S.L.1    Gaudet, S.2    Albeck, J.G.3    Burke, J.M.4    Sorger, P.K.5
  • 9
    • 84880538437 scopus 로고    scopus 로고
    • Signaling to extracellular signal-regulated kinase from ErbB1 kinase and protein kinase C: Feedback, heterogeneity, and gating
    • Perrett R, et al. (2013) Signaling to extracellular signal-regulated kinase from ErbB1 kinase and protein kinase C: Feedback, heterogeneity, and gating. J Biol Chem 288(29):21001-21014.
    • (2013) J Biol Chem , vol.288 , Issue.29 , pp. 21001-21014
    • Perrett, R.1
  • 10
    • 70350340728 scopus 로고    scopus 로고
    • The role of dynamic conformational ensembles in biomolecular recognition
    • Boehr DD, Nussinov R, Wright PE (2009) The role of dynamic conformational ensembles in biomolecular recognition. Nat Chem Biol 5(11):789-796.
    • (2009) Nat Chem Biol , vol.5 , Issue.11 , pp. 789-796
    • Boehr, D.D.1    Nussinov, R.2    Wright, P.E.3
  • 11
    • 84860527594 scopus 로고    scopus 로고
    • Noise in cellular signaling pathways: Causes and effects
    • Ladbury JE, Arold ST (2012) Noise in cellular signaling pathways: Causes and effects. Trends Biochem Sci 37(5):173-178.
    • (2012) Trends Biochem Sci , vol.37 , Issue.5 , pp. 173-178
    • Ladbury, J.E.1    Arold, S.T.2
  • 12
    • 0028872649 scopus 로고
    • Specificity of receptor tyrosine kinase signaling: Transient versus sustained extracellular signal-regulated kinase activation
    • Marshall CJ (1995) Specificity of receptor tyrosine kinase signaling: Transient versus sustained extracellular signal-regulated kinase activation. Cell 80(2):179-185.
    • (1995) Cell , vol.80 , Issue.2 , pp. 179-185
    • Marshall, C.J.1
  • 13
    • 34248597065 scopus 로고    scopus 로고
    • Differential regulation and properties of MAPKs
    • Raman M, Chen W, Cobb MH (2007) Differential regulation and properties of MAPKs. Oncogene 26(22):3100-3112.
    • (2007) Oncogene , vol.26 , Issue.22 , pp. 3100-3112
    • Raman, M.1    Chen, W.2    Cobb, M.H.3
  • 14
    • 0031907117 scopus 로고    scopus 로고
    • Activation of protein kinase C triggers its ubiquitination and degradation
    • Lu Z, et al. (1998) Activation of protein kinase C triggers its ubiquitination and degradation. Mol Cell Biol 18(2):839-845.
    • (1998) Mol Cell Biol , vol.18 , Issue.2 , pp. 839-845
    • Lu, Z.1
  • 15
    • 0033987230 scopus 로고    scopus 로고
    • The role of phosphatidylinositide-3-kinase in basal mitogen-activated protein kinase activity and cell survival
    • Versteeg HH, Evertzen MW, van Deventer SJ, Peppelenbosch MP (2000) The role of phosphatidylinositide-3-kinase in basal mitogen-activated protein kinase activity and cell survival. FEBS Lett 465(1):69-73.
    • (2000) FEBS Lett , vol.465 , Issue.1 , pp. 69-73
    • Versteeg, H.H.1    Evertzen, M.W.2    Van Deventer, S.J.3    Peppelenbosch, M.P.4
  • 16
    • 66149137998 scopus 로고    scopus 로고
    • Dynamic signaling in the Hog1 MAPK pathway relies on high basal signal transduction
    • Macia J, et al. (2009) Dynamic signaling in the Hog1 MAPK pathway relies on high basal signal transduction. Sci Signal 2(63):ra13.
    • (2009) Sci Signal , vol.2 , Issue.63
    • Macia, J.1
  • 17
  • 18
    • 84868618665 scopus 로고    scopus 로고
    • Grb2, a double-edged sword of receptor tyrosine kinase signaling
    • Belov AA, Mohammadi M (2012) Grb2, a double-edged sword of receptor tyrosine kinase signaling. Sci Signal 5(249):pe49.
    • (2012) Sci Signal , vol.5 , Issue.249
    • Belov, A.A.1    Mohammadi, M.2
  • 19
    • 33646345370 scopus 로고    scopus 로고
    • Arrestin-mediated ERK activation by gonadotropin-releasing hormone receptors: Receptor-specific activation mechanisms and compartmentalization
    • Caunt CJ, et al. (2006) Arrestin-mediated ERK activation by gonadotropin-releasing hormone receptors: Receptor-specific activation mechanisms and compartmentalization. J Biol Chem 281(5):2701-2710.
    • (2006) J Biol Chem , vol.281 , Issue.5 , pp. 2701-2710
    • Caunt, C.J.1
  • 20
    • 78649746618 scopus 로고    scopus 로고
    • Stimulus-induced uncoupling of extracellular signalregulated kinase phosphorylation from nuclear localization is dependent on docking domain interactions
    • Caunt CJ, McArdle CA (2010) Stimulus-induced uncoupling of extracellular signalregulated kinase phosphorylation from nuclear localization is dependent on docking domain interactions. J Cell Sci 123(Pt 24):4310-4320.
    • (2010) J Cell Sci , vol.123 , Issue.PART 24 , pp. 4310-4320
    • Caunt, C.J.1    McArdle, C.A.2
  • 21
    • 31844446495 scopus 로고    scopus 로고
    • Recent developments in constitutive receptor activity and inverse agonism, and their potential for GPCR drug discovery
    • Bond RA, Ijzerman AP (2006) Recent developments in constitutive receptor activity and inverse agonism, and their potential for GPCR drug discovery. Trends Pharmacol Sci 27(2):92-96.
    • (2006) Trends Pharmacol Sci , vol.27 , Issue.2 , pp. 92-96
    • Bond, R.A.1    Ijzerman, A.P.2
  • 22
    • 66149157927 scopus 로고    scopus 로고
    • TrkA overexpression enhances growth and metastasis of breast cancer cells
    • Lagadec C, et al. (2009) TrkA overexpression enhances growth and metastasis of breast cancer cells. Oncogene 28(18):1960-1970.
    • (2009) Oncogene , vol.28 , Issue.18 , pp. 1960-1970
    • Lagadec, C.1
  • 23
    • 34248583886 scopus 로고    scopus 로고
    • MAP kinase signalling pathways in cancer
    • Dhillon AS, Hagan S, Rath O, Kolch W (2007) MAP kinase signalling pathways in cancer. Oncogene 26(22):3279-3290.
    • (2007) Oncogene , vol.26 , Issue.22 , pp. 3279-3290
    • Dhillon, A.S.1    Hagan, S.2    Rath, O.3    Kolch, W.4
  • 24
    • 71449101586 scopus 로고    scopus 로고
    • Information processing and signal integration in bacterial quorum sensing
    • Mehta P, Goyal S, Long T, Bassler BL, Wingreen NS (2009) Information processing and signal integration in bacterial quorum sensing. Mol Syst Biol 5:325.
    • (2009) Mol Syst Biol , vol.5 , pp. 325
    • Mehta, P.1    Goyal, S.2    Long, T.3    Bassler, B.L.4    Wingreen, N.S.5
  • 25
    • 84867653137 scopus 로고    scopus 로고
    • Systems biology. How information theory handles cell signaling and uncertainty
    • Brennan MD, Cheong R, Levchenko A (2012) Systems biology. How information theory handles cell signaling and uncertainty. Science 338(6105):334-335.
    • (2012) Science , vol.338 , Issue.6105 , pp. 334-335
    • Brennan, M.D.1    Cheong, R.2    Levchenko, A.3
  • 26
    • 84881033077 scopus 로고    scopus 로고
    • Robustness and compensation of information transmission of signaling pathways
    • Uda S, et al. (2013) Robustness and compensation of information transmission of signaling pathways. Science 341(6145):558-561.
    • (2013) Science , vol.341 , Issue.6145 , pp. 558-561
    • Uda, S.1
  • 28
    • 84861204172 scopus 로고    scopus 로고
    • Identifying sources of variation and the flow of information in biochemical networks
    • Bowsher CG, Swain PS (2012) Identifying sources of variation and the flow of information in biochemical networks. Proc Natl Acad Sci USA 109(20):E1320-E1328.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.20
    • Bowsher, C.G.1    Swain, P.S.2
  • 29
    • 84875976767 scopus 로고    scopus 로고
    • The fidelity of dynamic signaling by noisy biomolecular networks
    • Bowsher CG, Voliotis M, Swain PS (2013) The fidelity of dynamic signaling by noisy biomolecular networks. PLoS Comput Biol 9(3):e1002965.
    • (2013) PLoS Comput Biol , vol.9 , Issue.3
    • Bowsher, C.G.1    Voliotis, M.2    Swain, P.S.3
  • 30
    • 79957573284 scopus 로고    scopus 로고
    • Strong negative feedback from Erk to Raf confers robustness to MAPK signalling
    • Fritsche-Guenther R, et al. (2011) Strong negative feedback from Erk to Raf confers robustness to MAPK signalling. Mol Syst Biol 7:489.
    • (2011) Mol Syst Biol , vol.7 , pp. 489
    • Fritsche-Guenther, R.1
  • 31
    • 0034096201 scopus 로고    scopus 로고
    • Protein phosphatases and the regulation of mitogen-activated protein kinase signalling
    • Keyse SM (2000) Protein phosphatases and the regulation of mitogen-activated protein kinase signalling. Curr Opin Cell Biol 12(2):186-192.
    • (2000) Curr Opin Cell Biol , vol.12 , Issue.2 , pp. 186-192
    • Keyse, S.M.1
  • 32
    • 30444441147 scopus 로고    scopus 로고
    • Sprouty proteins: Multifaceted negative-feedback regulators of receptor tyrosine kinase signaling
    • Mason JM, Morrison DJ, Basson MA, Licht JD (2006) Sprouty proteins: Multifaceted negative-feedback regulators of receptor tyrosine kinase signaling. Trends Cell Biol 16(1):45-54.
    • (2006) Trends Cell Biol , vol.16 , Issue.1 , pp. 45-54
    • Mason, J.M.1    Morrison, D.J.2    Basson, M.A.3    Licht, J.D.4
  • 33
    • 0001424903 scopus 로고
    • An amplified sensitivity arising from covalent modification in biological systems
    • Goldbeter A, Koshland DE, Jr. (1981) An amplified sensitivity arising from covalent modification in biological systems. Proc Natl Acad Sci USA 78(11):6840-6844.
    • (1981) Proc Natl Acad Sci USA , vol.78 , Issue.11 , pp. 6840-6844
    • Goldbeter, A.1    Koshland Jr., D.E.2
  • 34
    • 0033855774 scopus 로고    scopus 로고
    • Fluctuations and quality of control in biological cells: Zero-order ultrasensitivity reinvestigated
    • Berg OG, Paulsson J, Ehrenberg M (2000) Fluctuations and quality of control in biological cells: Zero-order ultrasensitivity reinvestigated. Biophys J 79(3):1228-1236.
    • (2000) Biophys J , vol.79 , Issue.3 , pp. 1228-1236
    • Berg, O.G.1    Paulsson, J.2    Ehrenberg, M.3
  • 35
    • 62549083590 scopus 로고    scopus 로고
    • Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression
    • Nevozhay D, Adams RM, Murphy KF, Josic K, Balázsi G (2009) Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci USA 106(13):5123-5128.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.13 , pp. 5123-5128
    • Nevozhay, D.1    Adams, R.M.2    Murphy, K.F.3    Josic, K.4    Balázsi, G.5
  • 36
    • 79960165588 scopus 로고    scopus 로고
    • Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli
    • Madar D, Dekel E, Bren A, Alon U (2011) Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli. BMC Syst Biol 5:111.
    • (2011) BMC Syst Biol , vol.5 , pp. 111
    • Madar, D.1    Dekel, E.2    Bren, A.3    Alon, U.4
  • 37
    • 78650635354 scopus 로고    scopus 로고
    • The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier
    • Sturm OE, et al. (2010) The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier. Sci Signal 3(153):ra90.
    • (2010) Sci Signal , vol.3 , Issue.153
    • Sturm, O.E.1
  • 38
    • 84867288393 scopus 로고    scopus 로고
    • The magnitude and colour of noise in genetic negative feedback systems
    • Voliotis M, Bowsher CG (2012) The magnitude and colour of noise in genetic negative feedback systems. Nucleic Acids Res 40(15):7084-7095.
    • (2012) Nucleic Acids Res , vol.40 , Issue.15 , pp. 7084-7095
    • Voliotis, M.1    Bowsher, C.G.2
  • 39
    • 0026608787 scopus 로고
    • Nuclear localization and regulation of erk- and rsk-encoded protein kinases
    • Chen RH, Sarnecki C, Blenis J (1992) Nuclear localization and regulation of erk- and rsk-encoded protein kinases. Mol Cell Biol 12(3):915-927.
    • (1992) Mol Cell Biol , vol.12 , Issue.3 , pp. 915-927
    • Chen, R.H.1    Sarnecki, C.2    Blenis, J.3
  • 40
    • 84857114667 scopus 로고    scopus 로고
    • Dual specificity phosphatases 10 and 16 are positive regulators of EGF-stimulated ERK activity: Indirect regulation of ERK signals by JNK/p38 selective MAPK phosphatases
    • Finch AR, Caunt CJ, Perrett RM, Tsaneva-Atanasova K, McArdle CA (2012) Dual specificity phosphatases 10 and 16 are positive regulators of EGF-stimulated ERK activity: Indirect regulation of ERK signals by JNK/p38 selective MAPK phosphatases. Cell Signal 24(5):1002-1011.
    • (2012) Cell Signal , vol.24 , Issue.5 , pp. 1002-1011
    • Finch, A.R.1    Caunt, C.J.2    Perrett, R.M.3    Tsaneva-Atanasova, K.4    McArdle, C.A.5
  • 41
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • Ferrell JE, Jr. (2002) Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14(2):140-148.
    • (2002) Curr Opin Cell Biol , vol.14 , Issue.2 , pp. 140-148
    • Ferrell Jr., J.E.1
  • 42
    • 78650136701 scopus 로고    scopus 로고
    • Information processing by biochemical networks: A dynamic approach
    • Bowsher CG (2011) Information processing by biochemical networks: A dynamic approach. J R Soc Interface 8(55):186-200.
    • (2011) J R Soc Interface , vol.8 , Issue.55 , pp. 186-200
    • Bowsher, C.G.1
  • 43
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27(3):379-423.
    • (1948) Bell Syst Tech J , vol.27 , Issue.3 , pp. 379-423
    • Shannon, C.E.1
  • 44
    • 47549096255 scopus 로고    scopus 로고
    • Modulation of allostery of pyruvate kinase by shifting of an ensemble of microstates
    • Lee JC (2008) Modulation of allostery of pyruvate kinase by shifting of an ensemble of microstates. Acta Biochim Biophys Sin (Shanghai) 40(7):663-669.
    • (2008) Acta Biochim Biophys Sin (Shanghai) , vol.40 , Issue.7 , pp. 663-669
    • Lee, J.C.1
  • 45
    • 31144453233 scopus 로고    scopus 로고
    • BRAF mutation predicts sensitivity to MEK inhibition
    • Solit DB, et al. (2006) BRAF mutation predicts sensitivity to MEK inhibition. Nature 439(7074):358-362.
    • (2006) Nature , vol.439 , Issue.7074 , pp. 358-362
    • Solit, D.B.1
  • 46
    • 18444374405 scopus 로고    scopus 로고
    • Mutations of the BRAF gene in human cancer
    • Davies H, et al. (2002) Mutations of the BRAF gene in human cancer. Nature 417: (6892): 949-954.
    • (2002) Nature , vol.417 , Issue.6892 , pp. 949-954
    • Davies, H.1
  • 47
    • 63149194964 scopus 로고    scopus 로고
    • (V600E) BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway
    • Pratilas CA, et al. (2009) (V600E) BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway. Proc Natl Acad Sci USA 106(11):4519-4524.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.11 , pp. 4519-4524
    • Pratilas, C.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.