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Volumn 85, Issue 2, 2014, Pages 188-199

MorphoNeuroNet: An automated method for dense neurite network analysis

Author keywords

Image analysis; ImageJ; Mature neuronal network; Neurite tracing; Neuronal morphology

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BRAIN CORTEX; COMPUTER PROGRAM; CYTOLOGY; FETUS; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGING SOFTWARE; LABORATORY AUTOMATION; MATURE NEURONAL NETWORK; MOUSE; NERVE CELL NETWORK; NERVOUS SYSTEM DEVELOPMENT; NEURITE; NEURITE TRACING; NEURONAL MORPHOLOGY; PRIMARY CELL CULTURE; ULTRASTRUCTURE;

EID: 84892679230     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.22408     Document Type: Article
Times cited : (30)

References (45)
  • 1
    • 0001956747 scopus 로고
    • Cell migration and axon guidance
    • In: Kandel ER, Schwartz JH, Jessell TM, editors. New York, NY: Elsevier Science Publishing Co. Inc.
    • Jessell T. Cell migration and axon guidance. In: Kandel ER, Schwartz JH, Jessell TM, editors. Principles of Neural Science. New York, NY: Elsevier Science Publishing Co. Inc.; 1991. pp 908-928.
    • (1991) Principles of Neural Science , pp. 908-928
    • Jessell, T.1
  • 3
    • 84858619494 scopus 로고    scopus 로고
    • Enhanced neurogenesis in organotypic cultures of rat hippocampus after transient subfield-selective excitotoxic insult induced by domoic acid
    • Perez-Gomez A, Tasker RA. Enhanced neurogenesis in organotypic cultures of rat hippocampus after transient subfield-selective excitotoxic insult induced by domoic acid. Neuroscience 2012;208:97-108.
    • (2012) Neuroscience , vol.208 , pp. 97-108
    • Perez-Gomez, A.1    Tasker, R.A.2
  • 5
    • 0028097090 scopus 로고
    • Hippocampal synaptogenesis in cell culture: Developmental time course of synapse formation, calcium influx, and synaptic protein distribution
    • Basarsky TA, Parpura V, Haydon PG. Hippocampal synaptogenesis in cell culture: Developmental time course of synapse formation, calcium influx, and synaptic protein distribution. J Neurosci 1994;14:6402-6411.
    • (1994) J Neurosci , vol.14 , pp. 6402-6411
    • Basarsky, T.A.1    Parpura, V.2    Haydon, P.G.3
  • 6
    • 0036719162 scopus 로고    scopus 로고
    • Excitatory actions of gaba during development: The nature of the nurture
    • Ben-Ari Y. Excitatory actions of gaba during development: The nature of the nurture. Nat Rev Neurosci 2002;3:728-739.
    • (2002) Nat Rev Neurosci , vol.3 , pp. 728-739
    • Ben-Ari, Y.1
  • 7
    • 0031760295 scopus 로고    scopus 로고
    • Development of glycinergic synaptic transmission to rat brain stem motoneurons
    • Singer JH, Talley EM, Bayliss DA, Berger AJ. Development of glycinergic synaptic transmission to rat brain stem motoneurons. J Neurophysiol 1998;80:2608-2620.
    • (1998) J Neurophysiol , vol.80 , pp. 2608-2620
    • Singer, J.H.1    Talley, E.M.2    Bayliss, D.A.3    Berger, A.J.4
  • 8
    • 14744278298 scopus 로고    scopus 로고
    • Characterization of an in vitro model of alphavirus infection of immature and mature neurons
    • Vernon PS, Griffin DE. Characterization of an in vitro model of alphavirus infection of immature and mature neurons. J Virol 2005;79:3438-3447.
    • (2005) J Virol , vol.79 , pp. 3438-3447
    • Vernon, P.S.1    Griffin, D.E.2
  • 9
    • 0034474266 scopus 로고    scopus 로고
    • Sensitivity of immature neurons in culture to metal-induced changes in reactive oxygen species and intracellular free calcium
    • Mundy WR, Freudenrich TM. Sensitivity of immature neurons in culture to metal-induced changes in reactive oxygen species and intracellular free calcium. Neurotoxicology 2000;21:1135-1144.
    • (2000) Neurotoxicology , vol.21 , pp. 1135-1144
    • Mundy, W.R.1    Freudenrich, T.M.2
  • 11
    • 77951975169 scopus 로고    scopus 로고
    • High content screening: Seeing is believing
    • Zanella F, Lorens JB, Link W. High content screening: Seeing is believing. Trends Biotechnol 2010;28:237-245.
    • (2010) Trends Biotechnol , vol.28 , pp. 237-245
    • Zanella, F.1    Lorens, J.B.2    Link, W.3
  • 14
    • 77954289614 scopus 로고    scopus 로고
    • Neuron tracing in perspective
    • Meijering E. Neuron tracing in perspective. Cytometry A 2010;77A:693-704.
    • (2010) Cytometry A , vol.77 A , pp. 693-704
    • Meijering, E.1
  • 16
    • 1942470024 scopus 로고    scopus 로고
    • Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images
    • Meijering E, Jacob M, Sarria JC, Steiner P, Hirling H, Unser M. Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A 2004;58A:167-176.
    • (2004) Cytometry A , vol.58 A , pp. 167-176
    • Meijering, E.1    Jacob, M.2    Sarria, J.C.3    Steiner, P.4    Hirling, H.5    Unser, M.6
  • 17
    • 38049081130 scopus 로고    scopus 로고
    • NeuriteTracer: A novel ImageJ plugin for automated quantification of neurite outgrowth
    • Pool M, Thiemann J, Bar-Or A, Fournier AE. NeuriteTracer: A novel ImageJ plugin for automated quantification of neurite outgrowth. J Neurosci Methods 2008;168:134-139.
    • (2008) J Neurosci Methods , vol.168 , pp. 134-139
    • Pool, M.1    Thiemann, J.2    Bar-Or, A.3    Fournier, A.E.4
  • 18
    • 33847238451 scopus 로고    scopus 로고
    • NeuronMetrics: Software for semi-automated processing of cultured neuron images
    • Narro ML, Yang F, Kraft R, Wenk C, Efrat A, Restifo LL. NeuronMetrics: Software for semi-automated processing of cultured neuron images. Brain Res 2007;1138:57-75.
    • (2007) Brain Res , vol.1138 , pp. 57-75
    • Narro, M.L.1    Yang, F.2    Kraft, R.3    Wenk, C.4    Efrat, A.5    Restifo, L.L.6
  • 19
    • 79958036999 scopus 로고    scopus 로고
    • NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery
    • Ho SY, Chao CY, Huang HL, Chiu TW, Charoenkwan P, Hwang E. NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery. BMC Bioinformatics 2011;12:230.
    • (2011) BMC Bioinformatics , vol.12 , pp. 230
    • Ho, S.Y.1    Chao, C.Y.2    Huang, H.L.3    Chiu, T.W.4    Charoenkwan, P.5    Hwang, E.6
  • 21
    • 0033828987 scopus 로고    scopus 로고
    • Effector caspases are dispensable for the early nuclear morphological changes during chemical-induced apoptosis
    • Johnson VL, Ko SC, Holmstrom TH, Eriksson JE, Chow SC. Effector caspases are dispensable for the early nuclear morphological changes during chemical-induced apoptosis. J Cell Sci 2000;113 (Pt 17):2941-2953.
    • (2000) J Cell Sci , vol.113 , Issue.PART 17 , pp. 2941-2953
    • Johnson, V.L.1    Ko, S.C.2    Holmstrom, T.H.3    Eriksson, J.E.4    Chow, S.C.5
  • 22
    • 0031975026 scopus 로고    scopus 로고
    • Response of postmitotic neurons to X-irradiation: Implications for the role of DNA damage in neuronal apoptosis
    • Gobbel GT, Bellinzona M, Vogt AR, Gupta N, Fike JR, Chan PH. Response of postmitotic neurons to X-irradiation: Implications for the role of DNA damage in neuronal apoptosis. J Neurosci 1998;18:147-155.
    • (1998) J Neurosci , vol.18 , pp. 147-155
    • Gobbel, G.T.1    Bellinzona, M.2    Vogt, A.R.3    Gupta, N.4    Fike, J.R.5    Chan, P.H.6
  • 23
    • 3042801604 scopus 로고    scopus 로고
    • Morphological features of cell death
    • Ziegler U, Groscurth P. Morphological features of cell death. News Physiol Sci 2004;19:124-128.
    • (2004) News Physiol Sci , vol.19 , pp. 124-128
    • Ziegler, U.1    Groscurth, P.2
  • 24
    • 0028867982 scopus 로고
    • Huang-Image thresholding by minimizing the measure of fuzziness
    • Huang L-KW, M-JJ. Huang-Image thresholding by minimizing the measure of fuzziness. Pattern Recogn 1995;28:41-51.
    • (1995) Pattern Recogn , vol.28 , pp. 41-51
    • Huang, L.-K.M.-J.1
  • 25
    • 0018004847 scopus 로고
    • Picture thresholding using an iterative selection method
    • Ridler TW, Calvard S. Picture thresholding using an iterative selection method. IEEE Trans Syst Man Cybernet 1978;8:630-632.
    • (1978) IEEE Trans Syst Man Cybernet , vol.8 , pp. 630-632
    • Ridler, T.W.1    Calvard, S.2
  • 27
    • 0022266946 scopus 로고
    • Moment-preserving thresholding: A new approach
    • Tsai WC. Moment-preserving thresholding: A new approach. Comput Vis Graph Image Process 1985;29:377-393.
    • (1985) Comput Vis Graph Image Process , vol.29 , pp. 377-393
    • Tsai, W.C.1
  • 28
    • 0036223199 scopus 로고    scopus 로고
    • Piecewise linear skeletonization using principal curves
    • Kegl B, Krzyzak A. Piecewise linear skeletonization using principal curves. IEEE Trans Pattern Anal Mach Intell 2002;24:59-74.
    • (2002) IEEE Trans Pattern Anal Mach Intell , vol.24 , pp. 59-74
    • Kegl, B.1    Krzyzak, A.2
  • 29
    • 33847710201 scopus 로고    scopus 로고
    • CellProfiler: Free, versatile software for automated biological image analysis
    • Lamprecht MR, Sabatini DM, Carpenter AE. CellProfiler: Free, versatile software for automated biological image analysis. Biotechniques 2007;42:71-75.
    • (2007) Biotechniques , vol.42 , pp. 71-75
    • Lamprecht, M.R.1    Sabatini, D.M.2    Carpenter, A.E.3
  • 30
    • 34249730857 scopus 로고    scopus 로고
    • The comparison index: A tool for assessing the accuracy of image segmentation
    • Möller M, Lymburner L, Volk M. The comparison index: A tool for assessing the accuracy of image segmentation. Int J Appl Earth Observ Geoinform 2007;9:311-321.
    • (2007) Int J Appl Earth Observ Geoinform , vol.9 , pp. 311-321
    • Möller, M.1    Lymburner, L.2    Volk, M.3
  • 31
    • 0042763974 scopus 로고    scopus 로고
    • A comparative study of image compression between jpeg and wavelet
    • Saffor A, Ramli AR, Ng K-H. A comparative study of image compression between jpeg and wavelet. Malays J Comput Sci 2001;14:39-45.
    • (2001) Malays J Comput Sci , vol.14 , pp. 39-45
    • Saffor, A.1    Ramli, A.R.2    Ng, K.-H.3
  • 32
    • 0003626435 scopus 로고    scopus 로고
    • Digital Image Processing
    • 3rd ed. Upper Saddle River: Prentice Hall;
    • Gonzalez RC, Woods RE. Digital Image Processing, 3rd ed. Upper Saddle River: Prentice Hall; 2008.
    • (2008)
    • Gonzalez, R.C.1    Woods, R.E.2
  • 33
    • 84892669517 scopus 로고    scopus 로고
    • SNR, PSNR, RMSE, MAE.
    • Daniel S. SNR, PSNR, RMSE, MAE. Available online at http://bigwww.epfl.ch/sage/soft/snr/; 2011.
    • (2011)
    • Daniel, S.1
  • 34
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang JH, Chung TD, Oldenburg KR. A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 1999;4:67-73.
    • (1999) J Biomol Screen , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 36
    • 79958108701 scopus 로고    scopus 로고
    • The DIADEM and beyond
    • Liu Y. The DIADEM and beyond. Neuroinformatics 2011;9:99-102.
    • (2011) Neuroinformatics , vol.9 , pp. 99-102
    • Liu, Y.1
  • 37
    • 79958177813 scopus 로고    scopus 로고
    • The past, present, and future of single neuron reconstruction
    • Svoboda K. The past, present, and future of single neuron reconstruction. Neuroinformatics 2011;9:97-98.
    • (2011) Neuroinformatics , vol.9 , pp. 97-98
    • Svoboda, K.1
  • 39
    • 65349111374 scopus 로고    scopus 로고
    • Segmentation of clustered nuclei with shape markers and marking function
    • Cheng J, Rajapakse JC. Segmentation of clustered nuclei with shape markers and marking function. IEEE Trans Biomed Eng 2009;56:741-748.
    • (2009) IEEE Trans Biomed Eng , vol.56 , pp. 741-748
    • Cheng, J.1    Rajapakse, J.C.2
  • 40
    • 33845973382 scopus 로고    scopus 로고
    • Radiation-induced cognitive dysfunction and cerebellar oxidative stress in mice: Protective effect of α-lipoic acid
    • Manda K, Ueno M, Moritake T, Anzai K. Radiation-induced cognitive dysfunction and cerebellar oxidative stress in mice: Protective effect of α-lipoic acid. Behav Brain Res 2007;177:7-14.
    • (2007) Behav Brain Res , vol.177 , pp. 7-14
    • Manda, K.1    Ueno, M.2    Moritake, T.3    Anzai, K.4
  • 41
    • 84873140715 scopus 로고    scopus 로고
    • Non-conventional apoptotic response to ionising radiation mediated by N-methyl D-aspartate receptors in immature neuronal cells
    • Samari N, De Saint-Georges L, Pani G, Baatout S, Leyns L, Benotmane MA. Non-conventional apoptotic response to ionising radiation mediated by N-methyl D-aspartate receptors in immature neuronal cells. Int J Mol Med 2013;31:516-524.
    • (2013) Int J Mol Med , vol.31 , pp. 516-524
    • Samari, N.1    De Saint-Georges, L.2    Pani, G.3    Baatout, S.4    Leyns, L.5    Benotmane, M.A.6
  • 42
    • 79958088818 scopus 로고    scopus 로고
    • Automated tracing of neurites from light microscopy stacks of images
    • Chothani P, Mehta V, Stepanyants A. Automated tracing of neurites from light microscopy stacks of images. Neuroinformatics 2011;9:263-278.
    • (2011) Neuroinformatics , vol.9 , pp. 263-278
    • Chothani, P.1    Mehta, V.2    Stepanyants, A.3
  • 43
    • 79958104510 scopus 로고    scopus 로고
    • A broadly applicable 3-D neuron tracing method based on open-curve snake
    • Wang Y, Narayanaswamy A, Tsai CL, Roysam B. A broadly applicable 3-D neuron tracing method based on open-curve snake. Neuroinformatics 2011;9:193-217.
    • (2011) Neuroinformatics , vol.9 , pp. 193-217
    • Wang, Y.1    Narayanaswamy, A.2    Tsai, C.L.3    Roysam, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.