The DIADEM and beyond

Neuroinformatics

Volumn 9, Issue 2-3, 2011, Pages 99-102

  Liu, Yuan ^a  

^a NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; CYTOLOGY; DATA MINING; HUMAN; IMAGE CYTOMETRY; IMAGE PROCESSING; METHODOLOGY; NERVE CELL; NEUROANATOMICAL TRACT TRACING; ORGANIZATION; PHYSIOLOGY; REVIEW; STAINING;

ANIMALS; CONGRESSES AS TOPIC; DATA MINING; HUMANS; IMAGE CYTOMETRY; IMAGE PROCESSING, COMPUTER-ASSISTED; NEUROANATOMICAL TRACT-TRACING TECHNIQUES; NEURONS; STAINING AND LABELING;

EID: 79958108701     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9102-5     Document Type: Review

References (25)

1. The Allen Institute for Brain Science (Allen Institute), the Janelia Farm Research Campus (JFRC) of the Howard Hughes Medical Institute (HHMI), and the Krasnow Institute for Advanced Study at George Mason University (Krasnow)
2. The National Institute of Neurological Disorders and Stroke, the National Institute of General Medical Sciences, the National Institute of Biomedical Imaging and Bioengineering, the National Institute on Drug Abuse, and the National Institute of Mental Health
3. Drs. Story Landis (Director of NINDS), Allan Jones (Chief Executive Officer of Allen Institute), Alan Merten (President of George Mason University) and Kevin Moses (Associate Director of JFRC)
4. Gillette, T. A., Brown, K. M., Svoboda, K., Liu, Y., & Ascoli, G. A. (2011). DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction. Neuroinformatics.
5. Svoboda, K. (2011). The Past, Present, and Future of Single Neuron Reconstruction. Neuroinformatics.
6. Senft, S. L. (2011). A Brief History of Neuronal Reconstruction. Neuroinformatics.
7. Douglas, R. J., & Martin, K. A. C. (2011). What's Black and White about the Grey Matter? Neuroinformatics. doi:10.1007/s12021-011-9106-1
8. Brown, K.M., Barrionuevo, G., Canty, A. J., De Paola, V., Hirsch, J. A., & Jefferis, G. S. X. E., et al. (2011). The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions. Neuroinformatics.
9. Gillette, T. A., Brown, K. M., & Ascoli, G. A. (2011). The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron. Neuroinformatics.
10. Narayanaswamy, A.,Wang, Y.,& Roysam, B. (2011).A Preprocessing Pipeline to Enhance 3-D Images of Neuronal Arbors. Neuroinformatics.
11. Wang, Y., Narayanaswamy, A., Tsai, C.-L., & Roysam, B. (2011). Generally Applicable 3D Neuron Tracing Approach and System Base on Open-Curve Snake. Neuroinformatics. doi:10.1007/s12021-011-9110-5
12. Luisi, J., Narayanaswamy, A., Galbreath, Z., & Roysam, B. (2011). The Farsight Trace Editor. Neuroinformatics.
13. Chothani, P., Mehta, V., & Stepanyants, A. (2011). Automated Tracing of Neurites from Light Microscopy Stacks of Images. Neuroinformatics.
14. Zhao, T., Xie, J., Amat, F., Clack, N., Ahammad, P., Peng, H., et al. (2011). Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. Neuroinformatics.
15. Türetken, E., González, G., Blum, C., & Fua, P. (2011). Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors. Neuroinformatics.
16. Bas, E., & Erdogmus, D. (2011). Principal Curves as Skeletons of Tubular Objects. Neuroinformatics.
17. Peng, H., Long, F., Zhao, T., & Myers, E. (2011). Proof-Editing is the Bottleneck of 3D Neuron Reconstruction: The Problem and Solutions. Neuroinformatics.
18. Kozloski, J. (2011). Automated Reconstruction of Neural Tissue and the Role of Large-Scale Simulation. Neuroinformatics.
19. Lu, J. (2011). Neuronal Tracing for Connectomic Studies. Neuroinformatics.
20. Lu, J., Fiala, J. C., & Lichtman, J. W. (2009). Semi-automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images. PLoS One, 4(5), e5655. doi:5.
21. DIADEM Conference co-organizers: Drs. Giorgio A. Ascoli (Krasnow), Yuan Liu (NINDS), and Karl Svoboda (JFRC)
22. He, H., & Cline, H. (2011). DIADEM X: Automated 4 Dimensional Analyses of Morphological Data. Neuroinformatics.
23. Canty, A. J., & De Paola, V. (2011). Axonal Reconstructions Going Live. Neuroinformatics.
24. Douglas, R. J., & Martin, K. A. C. (1991). Opening the Grey Box. TINS, 14, 286-293.
25. This Editorial reflects the author's own view of the DIADEM and her interpretations of the original articles, mini-reviews and commentaries that are published in this special issue. It does not represent the opinion or endorsement of the NINDS or any other Institutes at the NIH.