-
2
-
-
0036591381
-
Rapid automated three-dimensional tracing of neurons from confocal image stacks
-
DOI 10.1109/TITB.2002.1006304, PII S1089777102053104
-
KA Al-Kofahi S Lasek DH Szarowski CJ Pace G Nagy JN Turner B Roysam 2002 Rapid automated three-dimensional tracing of neurons from confocal image stacks IEEE Transactions on Information Technology in Biomedicine 6 2 171 187 12075671 10.1109/TITB.2002.1006304 (Pubitemid 34799098)
-
(2002)
IEEE Transactions on Information Technology in Biomedicine
, vol.6
, Issue.2
, pp. 171-187
-
-
Al-Kofahi, K.A.1
Lasek, S.2
Szarowski, D.H.3
Pace, C.J.4
Nagy, G.5
Turner, J.N.6
Roysam, B.7
-
3
-
-
0036462551
-
Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction
-
DOI 10.1109/42.993126, PII S0278006202029336
-
SR Aylward E Bullitt 2002 Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction IEEE Trans Medical Imaging 21 2 61 75 10.1109/42.993126 (Pubitemid 34466421)
-
(2002)
IEEE Transactions on Medical Imaging
, vol.21
, Issue.2
, pp. 61-75
-
-
Aylward, S.R.1
Bullitt, E.2
-
5
-
-
83155181287
-
Tubular Structure segmentation based on minimal path method and anisotropic enhancement
-
Benmansour, F., Cohen, L. D. (2010). Tubular Structure segmentation based on minimal path method and anisotropic enhancement. International Journal of Computer Vision, 1-19.
-
(2010)
International Journal of Computer Vision
, pp. 1-19
-
-
Benmansour, F.1
Cohen, L.D.2
-
7
-
-
33748327078
-
Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks
-
DOI 10.1016/j.neuroimage.2006.05.036, PII S1053811906005787
-
H Cai X Xu J Lu J Lichtman SP Yung ST Wong 2006 Repulsive force based snake model to segment and track neuronal axons in 3-D microscopy image stacks Neuroimage 32 4 1608 1620 16861006 10.1016/j.neuroimage.2006.05.036 (Pubitemid 44332286)
-
(2006)
NeuroImage
, vol.32
, Issue.4
, pp. 1608-1620
-
-
Cai, H.1
Xu, X.2
Lu, J.3
Lichtman, J.W.4
Yung, S.P.5
Wong, S.T.C.6
-
8
-
-
54249159267
-
Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3-D optical microscopy images
-
18440853 10.1016/j.media.2008.03.002
-
H Cai X Xu J Lu J Lichtman SP Yung ST Wong 2008 Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3-D optical microscopy images Medical Image Analysis 12 6 666 75 18440853 10.1016/j.media.2008.03.002
-
(2008)
Medical Image Analysis
, vol.12
, Issue.6
, pp. 666-75
-
-
Cai, H.1
Xu, X.2
Lu, J.3
Lichtman, J.4
Yung, S.P.5
Wong, S.T.6
-
9
-
-
0031213363
-
Global minimum for active contour models: A minimal path approach
-
Cohen, LD., Kimmel R. (1997). Global minimum for active contour models: a minimal path approach. International Journal of Computer Vision, 24, 57-78. (Pubitemid 127716437)
-
(1997)
International Journal of Computer Vision
, vol.24
, Issue.1
, pp. 57-78
-
-
Cohen, L.D.1
Kimmel, R.2
-
10
-
-
0028289552
-
Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data
-
AR Cohen B Roysam JN Turner 1994 Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data Journal de Microscopie 173 2 103 114 1:STN:280:DyaK2c3itlKkuw%3D%3D (Pubitemid 24178629)
-
(1994)
Journal of Microscopy
, vol.173
, Issue.2
, pp. 103-114
-
-
Cohen, A.R.1
Roysam, B.2
Turner, J.N.3
-
11
-
-
34147120474
-
A note on two problems in connexion with graphs
-
10.1007/BF01386390
-
EW Dijkstra 1959 A note on two problems in connexion with graphs Numerische Mathematik 1 269 271 10.1007/BF01386390
-
(1959)
Numerische Mathematik
, vol.1
, pp. 269-271
-
-
Dijkstra, E.W.1
-
12
-
-
17144363197
-
Reconstruct: A free editor for serial section microscopy
-
DOI 10.1111/j.1365-2818.2005.01466.x
-
JC Fiala 2005 Reconstruct: a free editor for serial section microscopy Journal of Microscopy 218 52 61 15817063 10.1111/j.1365-2818.2005.01466.x 1:STN:280:DC%2BD2M7osV2msQ%3D%3D (Pubitemid 40524168)
-
(2005)
Journal of Microscopy
, vol.218
, Issue.1
, pp. 52-61
-
-
Fiala, J.C.1
-
14
-
-
78650372667
-
Vessels-cut: A graph based approach to patient-specific carotid arteries modeling
-
Freiman, M., Broide, N., Natanzon, M., Nammer, E., Shilon, O., Weizman, L., Joshowicz, L., & Sosna, J. (2009). Vessels-cut: a graph based approach to patient-specific carotid arteries modeling. Proc. 2nd workshop on: 3D Physiological Human, Springer LNCS, 5903, 1-12.
-
(2009)
Proc. 2nd Workshop On: 3D Physiological Human, Springer LNCS
, vol.5903
, pp. 1-12
-
-
Freiman, M.1
Broide, N.2
Natanzon, M.3
Nammer, E.4
Shilon, O.5
Weizman, L.6
Joshowicz, L.7
Sosna, J.8
-
16
-
-
0345255182
-
Segmenting 3-D branching tubular structures using cores
-
Y Fridman SM Pizer S Aylward E Bullitt 2003 Segmenting 3-D branching tubular structures using cores MICCAI 2003 570 577
-
(2003)
MICCAI
, vol.2003
, pp. 570-577
-
-
Fridman, Y.1
Pizer, S.M.2
Aylward, S.3
Bullitt, E.4
-
17
-
-
77956008798
-
Delineating trees in 2-D images and 3-D image-stacks
-
González, G., Türetken, E., Fleuret, F., Fua, P. (2010). Delineating trees in 2-D images and 3-D image-stacks. Proc. of the IEEE international conference on Computer Vision and Pattern Recognition (CVPR), 2799-2806.
-
(2010)
Proc. of the IEEE International Conference on Computer Vision and Pattern Recognition (CVPR)
, pp. 2799-2806
-
-
González, G.1
Türetken, E.2
Fleuret, F.3
Fua, P.4
-
18
-
-
77957922500
-
VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis
-
20656456 10.1016/j.compmedimag.2010.06.002
-
G Hamarneh P Jassi 2010 VascuSynth: simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis Computerized Medical Imaging and Graphics 34 8 605 16 20656456 10.1016/j.compmedimag.2010.06.002
-
(2010)
Computerized Medical Imaging and Graphics
, vol.34
, Issue.8
, pp. 605-16
-
-
Hamarneh, G.1
Jassi, P.2
-
19
-
-
0042739762
-
Automated three-dimensional tracing of neurons in confocal and brightfield images
-
DOI 10.1017/S143192760303040X
-
He, W., Hamilton, T. A., Cohen, A. R., Holmes, T. J., Pace, C., Szarowski, D. H., et al. (2003). Automated three-dimensional tracing of neurons in confocal and brigheld images. Proc. of Microscopy and Microanalysis, 9(4), 296-310. (Pubitemid 37084345)
-
(2003)
Microscopy and Microanalysis
, vol.9
, Issue.4
, pp. 296-310
-
-
He, W.1
Hamilton, T.A.2
Cohen, A.R.3
Holmes, T.J.4
Pace, C.5
Szarowski, D.H.6
Turner, J.N.7
Roysam, B.8
-
22
-
-
70449344643
-
Design and study of flux-based features for 3-D vascular tracking
-
Lesage, D., Angelini, E. D., Bloch, I., Funka-Lea, G. (2009). Design and study of flux-based features for 3-D vascular tracking. IEEE International Symposium on Biomedical Imaging 286-289.
-
(2009)
IEEE International Symposium on Biomedical Imaging
, pp. 286-289
-
-
Lesage, D.1
Angelini, E.D.2
Bloch, I.3
Funka-Lea, G.4
-
23
-
-
70449346215
-
Automated actin filament segmentation, tracking, and tip elongation measurements based on open active contour models
-
Li, H., Shen, T., Smith, M. B., Fujiwara, I., Vavylonis, D., Huang, X. (2009). Automated actin filament segmentation, tracking, and tip elongation measurements based on open active contour models. Proc. of the IEEE Int'l Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 1302-1305.
-
(2009)
Proc. of the IEEE Int'l Symposium on Biomedical Imaging: From Nano to Macro (ISBI)
, pp. 1302-1305
-
-
Li, H.1
Shen, T.2
Smith, M.B.3
Fujiwara, I.4
Vavylonis, D.5
Huang, X.6
-
24
-
-
66249148685
-
Semi-automated reconstruction of neural processes from large numbers of fluorescence images
-
19479070 10.1371/journal.pone.0005655
-
J Lu JC Fiala JW Lichtman 2009 Semi-automated reconstruction of neural processes from large numbers of fluorescence images PLoS ONE 4 5 e5655 19479070 10.1371/journal.pone.0005655
-
(2009)
PLoS ONE
, vol.4
, Issue.5
, pp. 5655
-
-
Lu, J.1
Fiala, J.C.2
Lichtman, J.W.3
-
25
-
-
79958158724
-
The farsight trace editor
-
Submitted
-
Luisi, J., Narayanaswamy, A., Galbreath, Z., Roysam, B. (2011). The farsight trace editor. Neuroinformatics. Submitted.
-
(2011)
Neuroinformatics
-
-
Luisi, J.1
Narayanaswamy, A.2
Galbreath, Z.3
Roysam, B.4
-
26
-
-
77956512189
-
Teams battle for neuron prize
-
20829767 10.1038/467143a 1:CAS:528:DC%2BC3cXhtFaqtbbL
-
A Mann 2010 Teams battle for neuron prize Nature 467 143 20829767 10.1038/467143a 1:CAS:528:DC%2BC3cXhtFaqtbbL
-
(2010)
Nature
, vol.467
, pp. 143
-
-
Mann, A.1
-
27
-
-
77954289614
-
Neuron tracing in perspective
-
10.1002/cyto.a.20895
-
E Meijering 2010 Neuron tracing in perspective Cytometry. Part A 77 7 693 704 10.1002/cyto.a.20895
-
(2010)
Cytometry. Part A
, vol.77
, Issue.7
, pp. 693-704
-
-
Meijering, E.1
-
28
-
-
1542516518
-
A novel approach to neurite tracing in fluorescence microscopy images
-
Meijering, E., Jacob, M., Sarria, J.-C. F., Unser, M. (2003). A novel approach to neurite tracing in fluorescence microscopy images. International Conference on Signal and Image Processing, 491-495.
-
(2003)
International Conference on Signal and Image Processing
, pp. 491-495
-
-
Meijering, E.1
Jacob, M.2
Sarria, J.-C.F.3
Unser, M.4
-
29
-
-
79958158303
-
-
Proceedings of the Workshop on Cardiac Interventional Imaging and Biophysical Modelling Int Conf MICCAI
-
Mohan, V., Sundaramoorthi, G., Stillman, A., & Tannenbaum, A. (2009). Vessel Segmentation with Automatic Centerline Extraction using Tubular Surface Segmentation. Int Conf MICCAI: Proceedings of the Workshop on Cardiac Interventional Imaging and Biophysical Modelling.
-
(2009)
Vessel Segmentation with Automatic Centerline Extraction Using Tubular Surface Segmentation
-
-
Mohan, V.1
Sundaramoorthi, G.2
Stillman, A.3
Tannenbaum, A.4
-
31
-
-
77749291911
-
Robust adaptive 3-D segmentation of vessel laminae from fluorescence confocal microscope images and parallel GPU implementation
-
20199906 10.1109/TMI.2009.2022086
-
A Narayanaswamy S Dwarakapuram CS Bjornsson BM Cutler W Shain B Roysam 2010 Robust adaptive 3-D segmentation of vessel laminae from fluorescence confocal microscope images and parallel GPU implementation IEEE Transactions on Medical Imaging 29 3 583 97 20199906 10.1109/TMI.2009.2022086
-
(2010)
IEEE Transactions on Medical Imaging
, vol.29
, Issue.3
, pp. 583-97
-
-
Narayanaswamy, A.1
Dwarakapuram, S.2
Bjornsson, C.S.3
Cutler, B.M.4
Shain, W.5
Roysam, B.6
-
32
-
-
77954196544
-
Automatic reconstruction of 3-D neuron structures using a graph-augmented deformable model
-
10.1093/bioinformatics/btq212 1:CAS:528:DC%2BC3cXnsVOksL0%3D
-
HC Peng ZC Ruan D Atasoy S Sternson 2010a Automatic reconstruction of 3-D neuron structures using a graph-augmented deformable model Bioinformatics 26 12 i38 46 10.1093/bioinformatics/btq212 1:CAS:528:DC%2BC3cXnsVOksL0%3D
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. 38-46
-
-
Peng, H.C.1
Ruan, Z.C.2
Atasoy, D.3
Sternson, S.4
-
33
-
-
77950679704
-
V3D enables real-time 3-D visualization and quantitative analysis of large-scale biological image data sets
-
10.1038/nbt.1612 1:CAS:528:DC%2BC3cXjt1Ogtb8%3D
-
HC Peng ZC Ruan FH Long JH Simpson EW Myers 2010b V3D enables real-time 3-D visualization and quantitative analysis of large-scale biological image data sets Nature Biotechnology 28 348 353 10.1038/nbt.1612 1:CAS:528: DC%2BC3cXjt1Ogtb8%3D
-
(2010)
Nature Biotechnology
, vol.28
, pp. 348-353
-
-
Peng, H.C.1
Ruan, Z.C.2
Long, F.H.3
Simpson, J.H.4
Myers, E.W.5
-
34
-
-
26444587143
-
A novel robust tube detection filter for 3D centerline extraction
-
Image Analysis: 14th Scandinavian Conference, SCIA 2005. Proceedings
-
Pock, T., Beichel, R., Bischof, H. (2005). A novel robust tube detection filter for 3-D centerline extraction. 18th Symposium on Operating System Principles, 481-490. (Pubitemid 41422690)
-
(2005)
Lecture Notes in Computer Science
, vol.3540
, pp. 481-490
-
-
Pock, T.1
Beichel, R.2
Bischof, H.3
-
35
-
-
38049081130
-
NeuriteTracer: A novel ImageJ plugin for automated quantification of neurite outgrowth
-
17936365 10.1016/j.jneumeth.2007.08.029
-
M Pool J Thiemann A Bar-Or AE Fournier 2008 NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth Journal of Neuroscience Methods 168 134 139 17936365 10.1016/j.jneumeth.2007.08.029
-
(2008)
Journal of Neuroscience Methods
, vol.168
, pp. 134-139
-
-
Pool, M.1
Thiemann, J.2
Bar-Or, A.3
Fournier, A.E.4
-
36
-
-
7744235523
-
New methods for the computer-assisted 3-D reconstruction of neurons from confocal image stacks
-
DOI 10.1016/j.neuroimage.2004.06.047
-
S Schmitt JF Evers C Duch M Scholz K Obermayer 2004 New methods for the computer-assisted 3-D reconstruction of neurons from confocal image stacks Neuroimage 23 1283 1298 15589093 10.1016/j.neuroimage.2004.06.047 (Pubitemid 40260352)
-
(2004)
NeuroImage
, vol.23
, Issue.4
, pp. 1283-1298
-
-
Schmitt, S.1
Evers, J.F.2
Duch, C.3
Scholz, M.4
Obermayer, K.5
-
38
-
-
36248980924
-
Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging
-
DOI 10.1007/s12021-007-0013-4
-
R Srinivasan XB Zhou E Miller J Lu J Litchman STC Wong 2007 Automated axon tracking of 3-D confocal laser scanning microscopy images using guided probabilistic region merging Neuroinform 5 189 203 10.1007/s12021-007-0013-4 (Pubitemid 350135988)
-
(2007)
Neuroinformatics
, vol.5
, Issue.3
, pp. 189-203
-
-
Srinivasan, R.1
Zhou, X.2
Miller, E.3
Lu, J.4
Litchman, J.5
Wong, S.T.C.6
-
39
-
-
77954201127
-
Reconstruction of the neuromuscular junction connectome
-
20529938 10.1093/bioinformatics/btq179 1:CAS:528:DC%2BC3cXnsVOrsrs%3D
-
R Srinivasan XB Zhou E Miller J Lu J Litchman STC Wong 2010 Reconstruction of the neuromuscular junction connectome Bioinformatics 26 12 i64 i70 20529938 10.1093/bioinformatics/btq179 1:CAS:528:DC%2BC3cXnsVOrsrs%3D
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
Srinivasan, R.1
Zhou, X.B.2
Miller, E.3
Lu, J.4
Litchman, J.5
Wong, S.T.C.6
-
41
-
-
59249101942
-
Detection of the optimal neuron traces in confocal microscopy images
-
19059434 10.1016/j.jneumeth.2008.11.008
-
Z Vasilkoski A Stepanyants 2009 Detection of the optimal neuron traces in confocal microscopy images Journal of Neuroscience Methods 178 1 197 204 19059434 10.1016/j.jneumeth.2008.11.008
-
(2009)
Journal of Neuroscience Methods
, vol.178
, Issue.1
, pp. 197-204
-
-
Vasilkoski, Z.1
Stepanyants, A.2
-
42
-
-
36348967199
-
Dynamic local tracing for 3D axon curvilinear structure detection from microscopic image stack
-
DOI 10.1109/ISBI.2007.356793, 4193227, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings
-
Wang, J., Zhou, X. B., Lu, J., Lichtman, J., Chang, S. F., Wong, S. T. C. (2007). Dynamic local tracing for 3-D axon curvilinear structure detection from microscopic image stack. In IEEE International Symposium of Biomedical Imaging (ISBI), 81-84. (Pubitemid 350141030)
-
(2007)
2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings
, pp. 81-84
-
-
Wang, J.1
Zhou, X.2
Lu, J.3
Lichtman, J.4
Chang, S.-F.5
Wong, S.T.C.6
-
43
-
-
28844498390
-
New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales
-
DOI 10.1016/j.neuroscience.2005.05.053, PII S0306452205005865
-
SL Wearne A Rodriguez DB Ehlenberger AB Rocher SC Hendersion PR Hof 2005 New Techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales Neuroscience 136 661 680 16344143 10.1016/j.neuroscience.2005.05.053 1:CAS:528:DC%2BD2MXhtlaiurvN (Pubitemid 41774717)
-
(2005)
Neuroscience
, vol.136
, Issue.3
, pp. 661-680
-
-
Wearne, S.L.1
Rodriguez, A.2
Ehlenberger, D.B.3
Rocher, A.B.4
Henderson, S.C.5
Hof, P.R.6
-
44
-
-
84856030241
-
Automatic neuron tracing in volumetric microscopy images with anisotropic path searching
-
20879349
-
J Xie T Zhao T Lee E Myers H Peng 2010 Automatic neuron tracing in volumetric microscopy images with anisotropic path searching MICCAI 13 2 472 9 20879349
-
(2010)
MICCAI
, vol.13
, Issue.2
, pp. 472-9
-
-
Xie, J.1
Zhao, T.2
Lee, T.3
Myers, E.4
Peng, H.5
-
45
-
-
0032028944
-
Snakes, shapes, and gradient vector flow
-
PII S105771499801745X
-
C Xu JL Prince 1998 Snakes, shapes, and gradient vector flow IEEE Transactions on Image Processing 7 3 359 369 18276256 10.1109/83.661186 1:STN:280:DC%2BD1c7hslKmtQ%3D%3D (Pubitemid 128745354)
-
(1998)
IEEE Transactions on Image Processing
, vol.7
, Issue.3
, pp. 359-369
-
-
Xu, C.1
Prince, J.L.2
-
46
-
-
75149149751
-
MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images
-
20012509 10.1007/s12021-009-9057-y
-
X Yuan JT Trachtenberg SM Potter B Roysam 2009 MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images Neuroinformatics 7 213 232 20012509 10.1007/s12021-009-9057-y
-
(2009)
Neuroinformatics
, vol.7
, pp. 213-232
-
-
Yuan, X.1
Trachtenberg, J.T.2
Potter, S.M.3
Roysam, B.4
|