메뉴 건너뛰기




Volumn 11, Issue 1, 2011, Pages 92-102

Evaluation of the taxonomic utility of six-enzyme pulsed-field gel electrophoresis in reconstructing Salmonella subspecies phylogeny

Author keywords

Cladistics; Congruence; PFGE; Phylogenetic analysis; Salmonella enterica; Serovar; Subspecies; Taxonomy

Indexed keywords

BLNI PROTEIN; NOTI PROTEIN; PACI PROTEIN; RESTRICTION ENDONUCLEASE; SFII PROTEIN; SPEI PROTEIN; UNCLASSIFIED DRUG; XBAI PROTEIN;

EID: 78650191870     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2010.10.004     Document Type: Article
Times cited : (9)

References (44)
  • 1
    • 0342378138 scopus 로고    scopus 로고
    • The record horizontal gene transfer in Salmonella
    • Baumler A.J. The record horizontal gene transfer in Salmonella. Trends Microbiol. 1997, 5:318-322.
    • (1997) Trends Microbiol. , vol.5 , pp. 318-322
    • Baumler, A.J.1
  • 2
    • 0026029477 scopus 로고
    • Reference collection of strains of the Salmonella typhimurium complex from natural populations
    • Beltran P., Plock S.A., Smith N.H., Whittam T.S., Old D.C., Selander R.K. Reference collection of strains of the Salmonella typhimurium complex from natural populations. J. Gen. Microbiol. 1991, 137:601-606.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 601-606
    • Beltran, P.1    Plock, S.A.2    Smith, N.H.3    Whittam, T.S.4    Old, D.C.5    Selander, R.K.6
  • 3
    • 70349772770 scopus 로고    scopus 로고
    • Drug-resistant Salmonella Typhimurium DT 120: use of PFGE and MLVA in a putative international outbreak investigation
    • Best E.L., Hampton M.D., Ethelberg S., Liebana E., Clifton-Hadley F.A., Threlfall E.J. Drug-resistant Salmonella Typhimurium DT 120: use of PFGE and MLVA in a putative international outbreak investigation. Microb. Drug Resist. 2009, 15:133-138.
    • (2009) Microb. Drug Resist. , vol.15 , pp. 133-138
    • Best, E.L.1    Hampton, M.D.2    Ethelberg, S.3    Liebana, E.4    Clifton-Hadley, F.A.5    Threlfall, E.J.6
  • 6
    • 0035173584 scopus 로고    scopus 로고
    • Three R's of the bacterial evolution: how replication, repair, and recombination frame the origin of species
    • Brown E.W., LeClerc J.E., Kotewicz M.L., Cebula T.A. Three R's of the bacterial evolution: how replication, repair, and recombination frame the origin of species. Environ. Mol. Mutagen. 2001, 38:248-260.
    • (2001) Environ. Mol. Mutagen. , vol.38 , pp. 248-260
    • Brown, E.W.1    LeClerc, J.E.2    Kotewicz, M.L.3    Cebula, T.A.4
  • 7
    • 0036375811 scopus 로고    scopus 로고
    • Detection of recombination among Salmonella enterica strains using the incongruence length difference test
    • Brown E.W., Kotewicz M.L., Cebula T.A. Detection of recombination among Salmonella enterica strains using the incongruence length difference test. Mol. Phylogenet. Evol. 2002, 24:102-120.
    • (2002) Mol. Phylogenet. Evol. , vol.24 , pp. 102-120
    • Brown, E.W.1    Kotewicz, M.L.2    Cebula, T.A.3
  • 8
    • 0346734125 scopus 로고    scopus 로고
    • Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens
    • Brown E.W., Mammel M.K., LeClerc J.E., Cebula T.A. Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:15676-15681.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 15676-15681
    • Brown, E.W.1    Mammel, M.K.2    LeClerc, J.E.3    Cebula, T.A.4
  • 10
    • 78650202800 scopus 로고    scopus 로고
    • U.S. Department of Health and Human Services, Atlanta, GA, Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention Salmonella: Annual Summary 2004 2005, U.S. Department of Health and Human Services, Atlanta, GA.
    • (2005) Salmonella: Annual Summary 2004
  • 11
    • 0037952995 scopus 로고    scopus 로고
    • Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7
    • Davis M.A., Hancock D.D., Besser T.E., Call D.R. Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7. J. Clin. Microbiol. 2003, 41:1843-1849.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1843-1849
    • Davis, M.A.1    Hancock, D.D.2    Besser, T.E.3    Call, D.R.4
  • 12
    • 0142242128 scopus 로고    scopus 로고
    • Correlation between geographic distance and genetic similarity in an international collection of bovine faecal Escherichia coli O157:H7 isolates
    • Davis M.A., Hancock D.D., Besser T.E., Rice D.H., Hovde C.J., Digiacomo R., Samadpour M., Call D.R. Correlation between geographic distance and genetic similarity in an international collection of bovine faecal Escherichia coli O157:H7 isolates. Epidemiol. Infect. 2003, 131:923-930.
    • (2003) Epidemiol. Infect. , vol.131 , pp. 923-930
    • Davis, M.A.1    Hancock, D.D.2    Besser, T.E.3    Rice, D.H.4    Hovde, C.J.5    Digiacomo, R.6    Samadpour, M.7    Call, D.R.8
  • 13
    • 47249113002 scopus 로고    scopus 로고
    • Summer meeting 2007-the problem with fresh produce: an overview
    • Doyle M.P., Erickson M.C. Summer meeting 2007-the problem with fresh produce: an overview. J. Appl. Microbiol. 2008, 105:317-330.
    • (2008) J. Appl. Microbiol. , vol.105 , pp. 317-330
    • Doyle, M.P.1    Erickson, M.C.2
  • 16
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the boostrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the boostrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0027284243 scopus 로고
    • Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field electrophoresis
    • Harsono K.D., Kaspar C.W., Luchansky J.B. Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field electrophoresis. Appl. Environ. Microbiol. 1993, 59:3141-3144.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3141-3144
    • Harsono, K.D.1    Kaspar, C.W.2    Luchansky, J.B.3
  • 20
    • 59949102455 scopus 로고    scopus 로고
    • Poultry associated Salmonella enterica subsp. enterica serovar 4,12:d-reveals high clonality and a distinct pathogenicity gene repertoire
    • Huehn S., Bunge C., Junker E., Helmuth R., Malorny B. Poultry associated Salmonella enterica subsp. enterica serovar 4,12:d-reveals high clonality and a distinct pathogenicity gene repertoire. Appl. Environ. Microbiol. 2008, 75:1011-1020.
    • (2008) Appl. Environ. Microbiol. , vol.75 , pp. 1011-1020
    • Huehn, S.1    Bunge, C.2    Junker, E.3    Helmuth, R.4    Malorny, B.5
  • 21
    • 56349133867 scopus 로고    scopus 로고
    • Effect of sample preparation and bacterial concentration on Salmonella enterica detection in poultry meat using culture methods and PCR assaying of pre-enrichment broths
    • Kanki M., Sakata J., Taguchi M., Kumeda Y., Ishibashi M., Kawai T., Kawatsu K., Yamasaki W., Inoue K., Miyahara M. Effect of sample preparation and bacterial concentration on Salmonella enterica detection in poultry meat using culture methods and PCR assaying of pre-enrichment broths. Food Microbiol. 2009, 26:1-3.
    • (2009) Food Microbiol. , vol.26 , pp. 1-3
    • Kanki, M.1    Sakata, J.2    Taguchi, M.3    Kumeda, Y.4    Ishibashi, M.5    Kawai, T.6    Kawatsu, K.7    Yamasaki, W.8    Inoue, K.9    Miyahara, M.10
  • 22
    • 70349331151 scopus 로고    scopus 로고
    • Clustering analysis of Salmonella enterica serovar Typhi isolates in Korea by PFGE, ribotyping, and phage typing
    • Kim S., Kim S.H., Park J.H., Lee K.S., Park M.S., Lee B.K. Clustering analysis of Salmonella enterica serovar Typhi isolates in Korea by PFGE, ribotyping, and phage typing. Foodborne Pathog. Dis. 2009, 6:733-738.
    • (2009) Foodborne Pathog. Dis. , vol.6 , pp. 733-738
    • Kim, S.1    Kim, S.H.2    Park, J.H.3    Lee, K.S.4    Park, M.S.5    Lee, B.K.6
  • 23
    • 0036246561 scopus 로고    scopus 로고
    • Multilocus sequence typing for characterization of clinical and environmental salmonella strains
    • Kotetishvili M., Stine O.C., Kreger A., Morris J.G., Sulakvelidze A. Multilocus sequence typing for characterization of clinical and environmental salmonella strains. J. Clin. Microbiol. 2002, 40:1626-1635.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1626-1635
    • Kotetishvili, M.1    Stine, O.C.2    Kreger, A.3    Morris, J.G.4    Sulakvelidze, A.5
  • 24
    • 0036667438 scopus 로고    scopus 로고
    • Evolution of multi-gene segments in the mutS-rpo S intergenic region of Salmonella enterica serovar Typhimurium
    • Kotewicz M.L., Li B., Levy D.D., LeClerc J.E., Shifflet A.W., Cebula T.A. Evolution of multi-gene segments in the mutS-rpo S intergenic region of Salmonella enterica serovar Typhimurium. Microbiology 2002, 148:1-40.
    • (2002) Microbiology , vol.148 , pp. 1-40
    • Kotewicz, M.L.1    Li, B.2    Levy, D.D.3    LeClerc, J.E.4    Shifflet, A.W.5    Cebula, T.A.6
  • 25
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 2004, 5:50-163.
    • (2004) Brief. Bioinformatics , vol.5 , pp. 50-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 26
    • 0031741481 scopus 로고    scopus 로고
    • Escherichia coli molecular phylogeny using the incongruence length difference test
    • Lecointre G., Rachdi L., Darlu P., Denamur E. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 1998, 15:1685-1695.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1685-1695
    • Lecointre, G.1    Rachdi, L.2    Darlu, P.3    Denamur, E.4
  • 27
    • 12744255424 scopus 로고    scopus 로고
    • Application of molecular genetic methods in diagnostics and epidemiology of food-borne bacterial pathogens
    • Lukinmaa S., Nakari U.-M., Eklund M., Siitonen A. Application of molecular genetic methods in diagnostics and epidemiology of food-borne bacterial pathogens. APMIS 2004, 112:908-929.
    • (2004) APMIS , vol.112 , pp. 908-929
    • Lukinmaa, S.1    Nakari, U.-M.2    Eklund, M.3    Siitonen, A.4
  • 29
    • 55749084564 scopus 로고    scopus 로고
    • Molecular phylogeny of the Salmonellae: relationships among Salmonella species and subspecies determined from four housekeeping genes and evidence of lateral gene transfer events
    • McQuiston J.R., Herrera-Leon S., Wertheim B.C., Doyle J., Fields P.I., Tauxe R.V., Logsdon J.M. Molecular phylogeny of the Salmonellae: relationships among Salmonella species and subspecies determined from four housekeeping genes and evidence of lateral gene transfer events. J. Bacteriol. 2008, 190:7060-7067.
    • (2008) J. Bacteriol. , vol.190 , pp. 7060-7067
    • McQuiston, J.R.1    Herrera-Leon, S.2    Wertheim, B.C.3    Doyle, J.4    Fields, P.I.5    Tauxe, R.V.6    Logsdon, J.M.7
  • 30
    • 50949115852 scopus 로고    scopus 로고
    • Outbreak of Salmonella serotype Saintpaul infections associated with multiple raw produce items - United States, 2008
    • MMWR
    • MMWR Outbreak of Salmonella serotype Saintpaul infections associated with multiple raw produce items - United States, 2008. Morb. Mortal. Wkly. Rep. 2008, 57:929-934.
    • (2008) Morb. Mortal. Wkly. Rep. , vol.57 , pp. 929-934
  • 31
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H., Lawrence J.G., Groisman E.A. Lateral gene transfer and the nature of bacterial innovation. Nature 2000, 18:299-304.
    • (2000) Nature , vol.18 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 32
    • 33645539749 scopus 로고    scopus 로고
    • Frequent recombination and low level of clonality within Salmonella enterica subspecies I
    • Octavia S., Lan R. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 2006, 152:1099-1108.
    • (2006) Microbiology , vol.152 , pp. 1099-1108
    • Octavia, S.1    Lan, R.2
  • 33
    • 0024587441 scopus 로고
    • Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comd. nov
    • Reeves M.W., Evins G.M., Heiba A.A., Plikaytis B.D., Farmer J.J. Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comd. nov. J. Clin. Microbiol. 1989, 27:313-320.
    • (1989) J. Clin. Microbiol. , vol.27 , pp. 313-320
    • Reeves, M.W.1    Evins, G.M.2    Heiba, A.A.3    Plikaytis, B.D.4    Farmer, J.J.5
  • 34
    • 33645707707 scopus 로고    scopus 로고
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7. Salmonella, and Shigella for PulseNet
    • Ribot E.M., Fair M.A., Gautom R., Cameron D.N., Hunter S.B., Swaminathan B., Barrett T.J. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7. Salmonella, and Shigella for PulseNet. Foodborne Pathog. Dis. 2006, 3:59-67.
    • (2006) Foodborne Pathog. Dis. , vol.3 , pp. 59-67
    • Ribot, E.M.1    Fair, M.A.2    Gautom, R.3    Cameron, D.N.4    Hunter, S.B.5    Swaminathan, B.6    Barrett, T.J.7
  • 36
    • 0035351051 scopus 로고    scopus 로고
    • PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States
    • the CDC PulseNet Task Force
    • Swaminathan B., Barrett T.J., Hunter S.B., Tauxe R.V. PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States. Emerg. Infect. Dis. 2001, 7:382-389. the CDC PulseNet Task Force.
    • (2001) Emerg. Infect. Dis. , vol.7 , pp. 382-389
    • Swaminathan, B.1    Barrett, T.J.2    Hunter, S.B.3    Tauxe, R.V.4
  • 37
    • 0001140522 scopus 로고
    • New block phylogeny reconstruction
    • Sinauer, Sunderland, MA, D.M. Hillis, C. Moritz (Eds.)
    • Swofford D.L., Olsen G.J. New block phylogeny reconstruction. Molecular Systematics 1990, 411-501. Sinauer, Sunderland, MA. D.M. Hillis, C. Moritz (Eds.).
    • (1990) Molecular Systematics , pp. 411-501
    • Swofford, D.L.1    Olsen, G.J.2
  • 39
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulse-field gel electrophoresis: criteria for bacterial strain typing
    • Tenover F.C., Arbeit R.D., Goering R.V., Mickelsen P.A., Murray B.E., Persing D.H., Swaminathan B. Interpreting chromosomal DNA restriction patterns produced by pulse-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 1995, 33:2233-2239.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3    Mickelsen, P.A.4    Murray, B.E.5    Persing, D.H.6    Swaminathan, B.7
  • 40
    • 78650190024 scopus 로고    scopus 로고
    • USDA, Economic Research Service. Foodborne Illness Calculator.
    • USDA, 2010. Economic Research Service. Foodborne Illness Calculator. http://www.ers.usda.gov/data/foodborneillness/.
    • (2010)
  • 41
    • 78650216601 scopus 로고    scopus 로고
    • World Health Organization, 2005. Drug-resistant Salmonella Fact Sheet No. 139. April
    • World Health Organization, 2005. Drug-resistant Salmonella Fact Sheet No. 139. April 2005. http://www.who.int/mediacentre/factsheets/fs139/en/.
    • (2005)
  • 42
    • 53749101695 scopus 로고    scopus 로고
    • An enhanced discriminatory pulsed-filed gel electrophoresis scheme for subtyping Salmonella serotypes Heildelberg, Kentucky, Saintpaul, and Hadar
    • Xi M., Zheng J., Zhao S., Brown E.W., Meng J. An enhanced discriminatory pulsed-filed gel electrophoresis scheme for subtyping Salmonella serotypes Heildelberg, Kentucky, Saintpaul, and Hadar. J. Food Protect. 2008, 71:2067-2072.
    • (2008) J. Food Protect. , vol.71 , pp. 2067-2072
    • Xi, M.1    Zheng, J.2    Zhao, S.3    Brown, E.W.4    Meng, J.5
  • 44
    • 78650182057 scopus 로고    scopus 로고
    • Simultaneous analysis of multiple enzymes increases accuracy of PFGE in assigning genetic relationships among homogeneous Salmonella strains. J. Clin Microbio., in press.
    • Zheng, J., Keys, C.E., Zhao, S., Ahmed, R., Meg, J., and Brown, W. Simultaneous analysis of multiple enzymes increases accuracy of PFGE in assigning genetic relationships among homogeneous Salmonella strains. J. Clin Microbio., in press.
    • Zheng, J.1    Keys, C.E.2    Zhao, S.3    Ahmed, R.4    Meg, J.5    Brown, W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.