메뉴 건너뛰기




Volumn 13, Issue 6, 2013, Pages 598-604

The heparin-binding protein interactome in pancreatic diseases

Author keywords

Bioinformatics; Heparan sulfate; Heparin; Heparin binding protein

Indexed keywords

BIOLOGICAL MARKER; HEPARIN BINDING PROTEIN; MESSENGER RNA;

EID: 84892603504     PISSN: 14243903     EISSN: 14243911     Source Type: Journal    
DOI: 10.1016/j.pan.2013.08.004     Document Type: Article
Times cited : (17)

References (46)
  • 1
    • 70849099495 scopus 로고    scopus 로고
    • The extracellular matrix: Not just pretty fibrils
    • Hynes RO. The extracellular matrix: not just pretty fibrils. Science 2009; 326: 1216e9.
    • (2009) Science , vol.326 , pp. 1216-1219
    • Hynes, R.O.1
  • 2
    • 34447525057 scopus 로고    scopus 로고
    • Microenvironmental regulation of biomacromolecular therapies
    • Kong HJ, Mooney DJ. Microenvironmental regulation of biomacromolecular therapies. Nat Rev Drug Discov 2007; 6: 455e63.
    • (2007) Nat Rev Drug Discov , vol.6 , pp. 455-463
    • Kong, H.J.1    Mooney, D.J.2
  • 3
    • 84864472945 scopus 로고    scopus 로고
    • Transport of fibroblast growth factor 2 in the pericellular matrix is controlled by the spatial distribution of its binding sites in heparan sulfate
    • Duchesne L, Octeau V, Bearon RN, Beckett A, Prior IA, Lounis B, et al. Transport of fibroblast growth factor 2 in the pericellular matrix is controlled by the spatial distribution of its binding sites in heparan sulfate. PLoS Biol 2012; 10: e1001361.
    • (2012) PLoS Biol , vol.10
    • Duchesne, L.1    Octeau, V.2    Bearon, R.N.3    Beckett, A.4    Prior, I.A.5    Lounis, B.6
  • 4
    • 84866445523 scopus 로고    scopus 로고
    • Pancreatic stellate cells: A starring role in normal and diseased pancreas
    • Apte MV, Pirola RC, Wilson JS. Pancreatic stellate cells: a starring role in normal and diseased pancreas. Front Physiol 2012; 3: 344.
    • (2012) Front Physiol , vol.3 , pp. 344
    • Apte, M.V.1    Pirola, R.C.2    Wilson, J.S.3
  • 6
    • 33646909100 scopus 로고    scopus 로고
    • Protein family expansions and biological complexity
    • Vogel C, Chothia C. Protein family expansions and biological complexity. PLoS Comput Biol 2006; 2: e48.
    • (2006) PLoS Comput Biol , vol.2
    • Vogel, C.1    Chothia, C.2
  • 7
    • 79957592466 scopus 로고    scopus 로고
    • A systems biology approach for the investigation of the heparin/heparan sulfate interactome
    • Ori A, Wilkinson MC, Fernig DG. A systems biology approach for the investigation of the heparin/heparan sulfate interactome. J Biol Chem 2011; 286: 19892e904.
    • (2011) J Biol Chem , vol.286 , pp. 19892-19904
    • Ori, A.1    Wilkinson, M.C.2    Fernig, D.G.3
  • 8
    • 42649106868 scopus 로고    scopus 로고
    • The heparanome and regulation of cell function: Structures, functions and challenges
    • Ori A, Wilkinson MC, Fernig DG. The heparanome and regulation of cell function: structures, functions and challenges. Front Biosci 2008; 13: 4309e38.
    • (2008) Front Biosci , vol.13 , pp. 4309-4338
    • Ori, A.1    Wilkinson, M.C.2    Fernig, D.G.3
  • 9
    • 57349112286 scopus 로고    scopus 로고
    • Generation and regeneration of cells of the liver and pancreas
    • Zaret KS, Grompe M. Generation and regeneration of cells of the liver and pancreas. Science 2008; 322: 1490e4.
    • (2008) Science , vol.322 , pp. 1490-1494
    • Zaret, K.S.1    Grompe, M.2
  • 13
    • 0032968117 scopus 로고    scopus 로고
    • Pancreatic carcinoma versus chronic pancreatitis: Dynamic MR imaging
    • Johnson PT, Outwater EK. Pancreatic carcinoma versus chronic pancreatitis: dynamic MR imaging. Radiology 1999; 212: 213e8.
    • (1999) Radiology , vol.212 , pp. 213-218
    • Johnson, P.T.1    Outwater, E.K.2
  • 16
    • 38649102178 scopus 로고    scopus 로고
    • Pancreatic expression database: A generic model for the organization, integration and mining of complex cancer datasets
    • Chelala C, Hahn SA, Whiteman HJ, Barry S, Hariharan D, Radon TP, et al. Pancreatic expression database: a generic model for the organization, integration and mining of complex cancer datasets. BMC Genomics 2007; 8: 439.
    • (2007) BMC Genomics , vol.8 , pp. 439
    • Chelala, C.1    Hahn, S.A.2    Whiteman, H.J.3    Barry, S.4    Hariharan, D.5    Radon, T.P.6
  • 18
    • 78651324347 scopus 로고    scopus 로고
    • The string database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, et al. The string database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 2011; 39: D561e8.
    • (2011) Nucleic Acids Res , vol.39
    • Szklarczyk, D.1    Franceschini, A.2    Kuhn, M.3    Simonovic, M.4    Roth, A.5    Minguez, P.6
  • 19
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011; 27: 431e2.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5
  • 20
    • 84861364052 scopus 로고    scopus 로고
    • Merging experimental data and in silico analysis: A systems-level approach to autoimmune disease and cancer
    • Cirillo N. Merging experimental data and in silico analysis: a systems-level approach to autoimmune disease and cancer. Expert Rev Clin Immunol 2012; 8: 361e72.
    • (2012) Expert Rev Clin Immunol , vol.8 , pp. 361-372
    • Cirillo, N.1
  • 22
    • 70350234820 scopus 로고    scopus 로고
    • Quantifying the connectivity of a network: The network correlation function method
    • Barzel B, Biham O. Quantifying the connectivity of a network: the network correlation function method. Phys Rev E Stat Nonlin Soft Matter Phys 2009; 80: 046104.
    • (2009) Phys Rev e Stat Nonlin Soft Matter Phys , vol.80 , pp. 046104
    • Barzel, B.1    Biham, O.2
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using David bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using David bioinformatics resources. Nat Protoc 2009; 4: 44e57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 33644682134 scopus 로고    scopus 로고
    • Testing experimental data for univariate normality
    • Henderson AR. Testing experimental data for univariate normality. Clin Chim Acta 2006; 366: 112e29.
    • (2006) Clin Chim Acta , vol.366 , pp. 112-129
    • Henderson, A.R.1
  • 25
    • 34447512704 scopus 로고    scopus 로고
    • Understanding network concepts in modules
    • Dong J, Horvath S. Understanding network concepts in modules. BMC Syst Biol 2007; 1: 24.
    • (2007) BMC Syst Biol , vol.1 , pp. 24
    • Dong, J.1    Horvath, S.2
  • 26
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of small-world networks
    • Watts DJ, Strogatz SH. Collective dynamics of small-world networks. Nature 1998; 393: 440e2.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 27
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cells functional organization
    • Barabasi AL, Oltvai ZN. Network biology: understanding the cells functional organization. Nat Rev Genet 2004; 5: 101e13.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 28
    • 84879311786 scopus 로고    scopus 로고
    • Network-based drug discovery by integrating systems biology and computational technologies
    • Leung EL, Cao ZW, Jiang ZH, Zhou H, Liu L. Network-based drug discovery by integrating systems biology and computational technologies. Brief Bioinform 2012.
    • (2012) Brief Bioinform
    • Leung, E.L.1    Cao, Z.W.2    Jiang, Z.H.3    Zhou, H.4    Liu, L.5
  • 29
    • 80055081322 scopus 로고    scopus 로고
    • Role of neutrophils in the activation of trypsinogen in severe acute pancreatitis
    • Abdulla A, Awla D, Thorlacius H, Regner S. Role of neutrophils in the activation of trypsinogen in severe acute pancreatitis. J Leukoc Biol 2011.
    • (2011) J Leukoc Biol
    • Abdulla, A.1    Awla, D.2    Thorlacius, H.3    Regner, S.4
  • 31
    • 79959816776 scopus 로고    scopus 로고
    • Combined logical and data-driven models for linking signalling pathways to cellular response
    • Melas IN, Mitsos A, Messinis DE, Weiss TS, Alexopoulos LG. Combined logical and data-driven models for linking signalling pathways to cellular response. BMC Syst Biol 2011; 5: 107.
    • (2011) BMC Syst Biol , vol.5 , pp. 107
    • Melas, I.N.1    Mitsos, A.2    Messinis, D.E.3    Weiss, T.S.4    Alexopoulos, L.G.5
  • 33
    • 35948954244 scopus 로고    scopus 로고
    • Hepatic stellate cells: Protean, multifunctional, and enigmatic cells of the liver
    • Friedman SL. Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver. Physiol Rev 2008; 88: 125e72.
    • (2008) Physiol Rev , vol.88 , pp. 125-172
    • Friedman, S.L.1
  • 35
    • 0034808310 scopus 로고    scopus 로고
    • History, heterogeneity, developmental biology, and functions of quiescent hepatic stellate cells
    • Geerts A. History, heterogeneity, developmental biology, and functions of quiescent hepatic stellate cells. Semin Liver Dis 2001; 21: 311e35.
    • (2001) Semin Liver Dis , vol.21 , pp. 311-335
    • Geerts, A.1
  • 36
    • 26044431888 scopus 로고    scopus 로고
    • Transcriptome analysis of human hepatic and pancreatic stellate cells: Organ-specific variations of a common transcriptional phenotype
    • Buchholz M, Kestler HA, Holzmann K, Ellenrieder V, Schneiderhan W, Siech M, et al. Transcriptome analysis of human hepatic and pancreatic stellate cells: organ-specific variations of a common transcriptional phenotype. J Mol Med (Berl) 2005; 83: 795e805.
    • (2005) J Mol Med (Berl) , vol.83 , pp. 795-805
    • Buchholz, M.1    Kestler, H.A.2    Holzmann, K.3    Ellenrieder, V.4    Schneiderhan, W.5    Siech, M.6
  • 37
    • 33845998896 scopus 로고    scopus 로고
    • The pancreatic stellate cell: A star on the rise in pancreatic diseases
    • Omary MB, Lugea A, Lowe AW, Pandol SJ. The pancreatic stellate cell: a star on the rise in pancreatic diseases. J Clin Invest 2007; 117: 50e9.
    • (2007) J Clin Invest , vol.117 , pp. 50-59
    • Omary, M.B.1    Lugea, A.2    Lowe, A.W.3    Pandol, S.J.4
  • 38
    • 35948950822 scopus 로고    scopus 로고
    • The role of inflammatory and parenchymal cells in acute pancreatitis
    • Vonlaufen A, Apte MV, Imhof BA, Frossard JL. The role of inflammatory and parenchymal cells in acute pancreatitis. J Pathol 2007; 213: 239e48.
    • (2007) J Pathol , vol.213 , pp. 239-248
    • Vonlaufen, A.1    Apte, M.V.2    Imhof, B.A.3    Frossard, J.L.4
  • 39
    • 34547652547 scopus 로고    scopus 로고
    • Mechanisms of disease: Chronic inflammation and cancer in the pancreas e a potential role for pancreatic stellate cells?
    • Algul H, Treiber M, Lesina M, Schmid RM. Mechanisms of disease: chronic inflammation and cancer in the pancreas e a potential role for pancreatic stellate cells? Nat Clin Pract Gastroenterol Hepatol 2007; 4: 454e62.
    • (2007) Nat Clin Pract Gastroenterol Hepatol , vol.4 , pp. 454-462
    • Algul, H.1    Treiber, M.2    Lesina, M.3    Schmid, R.M.4
  • 40
    • 0031872092 scopus 로고    scopus 로고
    • Characterization of keratinocyte growth factor and receptor expression in human pancreatic cancer
    • Ishiwata T, Friess H, Buchler MW, Lopez ME, Korc M. Characterization of keratinocyte growth factor and receptor expression in human pancreatic cancer. Am J Pathol 1998; 153: 213e22.
    • (1998) Am J Pathol , vol.153 , pp. 213-222
    • Ishiwata, T.1    Friess, H.2    Buchler, M.W.3    Lopez, M.E.4    Korc, M.5
  • 43
    • 65349087952 scopus 로고    scopus 로고
    • FGFR2 as a molecular target in endometrial cancer
    • Byron SA, Pollock PM. FGFR2 as a molecular target in endometrial cancer. Future Oncol 2009; 5: 27e32.
    • (2009) Future Oncol , vol.5 , pp. 27-32
    • Byron, S.A.1    Pollock, P.M.2
  • 45
  • 46
    • 44049092574 scopus 로고    scopus 로고
    • Fractionation of proteins by heparin chromatography
    • Xiong S, Zhang L, He QY. Fractionation of proteins by heparin chromatography. Methods Mol Biol 2008; 424: 213e21.
    • (2008) Methods Mol Biol , vol.424 , pp. 213-221
    • Xiong, S.1    Zhang, L.2    He, Q.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.