메뉴 건너뛰기




Volumn 95, Issue PART 2, 2014, Pages 486-495

Binding and processing of small dsRNA molecules by the class 1 RNase III protein encoded by sweet potato chlorotic stunt virus

Author keywords

[No Author keywords available]

Indexed keywords

MAGNESIUM ION; MANGANESE; MICRORNA; RIBONUCLEASE III; SMALL INTERFERING RNA;

EID: 84892561725     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.058693-0     Document Type: Article
Times cited : (13)

References (59)
  • 1
    • 84874086395 scopus 로고    scopus 로고
    • Beyond secondary structure: Primary-sequence determinants license pri-miRNA hairpins for processing
    • Auyeung, V. C., Ulitsky, I., McGeary, S. E. & Bartel, D. P. (2013). Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing. Cell 152, 844-858.
    • (2013) Cell , vol.152 , pp. 844-858
    • Auyeung, V.C.1    Ulitsky, I.2    McGeary, S.E.3    Bartel, D.P.4
  • 2
    • 79955379930 scopus 로고    scopus 로고
    • Vive la différence: Biogenesis and evolution of microRNAs in plants and animals
    • Axtell, M. J., Westholm, J. O. & Lai, E. C. (2011). Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biol 12, 221.
    • (2011) Genome Biol , vol.12 , pp. 221
    • Axtell, M.J.1    Westholm, J.O.2    Lai, E.C.3
  • 3
    • 33846545543 scopus 로고    scopus 로고
    • Amplified silencing
    • Baulcombe, D. C. (2007). Amplified silencing. Science 315, 199-200.
    • (2007) Science , vol.315 , pp. 199-200
    • Baulcombe, D.C.1
  • 4
    • 0035662491 scopus 로고    scopus 로고
    • Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage
    • Blaszczyk, J., Tropea, J. E., Bubunenko, M., Routzahn, K. M., Waugh, D. S., Court, D. L. & Ji, X. (2001). Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage. Structure 9, 1225-1236.
    • (2001) Structure , vol.9 , pp. 1225-1236
    • Blaszczyk, J.1    Tropea, J.E.2    Bubunenko, M.3    Routzahn, K.M.4    Waugh, D.S.5    Court, D.L.6    Ji, X.7
  • 6
    • 80053893642 scopus 로고    scopus 로고
    • Cell-to-cell and long-distance siRNA movement in plants: Mechanisms and biological implications
    • Brosnan, C. A. & Voinnet, O. (2011). Cell-to-cell and long-distance siRNA movement in plants: mechanisms and biological implications. Curr Opin Plant Biol 14, 580-587.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 580-587
    • Brosnan, C.A.1    Voinnet, O.2
  • 7
    • 79955708454 scopus 로고    scopus 로고
    • Viral suppressors of RNA silencing
    • Burgyán, J. & Havelda, Z. (2011). Viral suppressors of RNA silencing. Trends Plant Sci 16, 265-272.
    • (2011) Trends Plant Sci , vol.16 , pp. 265-272
    • Burgyán, J.1    Havelda, Z.2
  • 8
    • 0037736794 scopus 로고    scopus 로고
    • RNA structuredependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III
    • Calin-Jageman, I. & Nicholson, A. W. (2003). RNA structuredependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III. Nucleic Acids Res 31, 2381-2392.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2381-2392
    • Calin-Jageman, I.1    Nicholson, A.W.2
  • 9
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew, R. W. & Sontheimer, E. J. (2009). Origins and mechanisms of miRNAs and siRNAs. Cell 136, 642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 10
    • 79958262266 scopus 로고    scopus 로고
    • Turnover of mature miRNAs and siRNAs in plants and algae
    • Cerutti, H. & Ibrahim, F. (2010). Turnover of mature miRNAs and siRNAs in plants and algae. Adv Exp Med Biol 700, 124-139.
    • (2010) Adv Exp Med Biol , vol.700 , pp. 124-139
    • Cerutti, H.1    Ibrahim, F.2
  • 11
    • 36849084015 scopus 로고    scopus 로고
    • Stabilized recombinant suppressors of RNA silencing: Functional effects of linking monomers of Carnation Italian Ringspot virus p19
    • Cheng, J., Sagan, S. M., Assem, N., Koukiekolo, R., Goto, N. K. & Pezacki, J. P. (2007). Stabilized recombinant suppressors of RNA silencing: functional effects of linking monomers of Carnation Italian Ringspot virus p19. Biochim Biophys Acta 1774, 1528-1535.
    • (2007) Biochim Biophys Acta , vol.1774 , pp. 1528-1535
    • Cheng, J.1    Sagan, S.M.2    Assem, N.3    Koukiekolo, R.4    Goto, N.K.5    Pezacki, J.P.6
  • 14
    • 84874989679 scopus 로고    scopus 로고
    • Revisiting RNA-directed DNA methylation
    • Dalakouras, A. & Wassenegger, M. (2013). Revisiting RNA-directed DNA methylation. RNA Biol 10, 453-455.
    • (2013) RNA Biol , vol.10 , pp. 453-455
    • Dalakouras, A.1    Wassenegger, M.2
  • 16
    • 77956170809 scopus 로고    scopus 로고
    • RNA-based antiviral immunity
    • Ding, S. W. (2010). RNA-based antiviral immunity. Nat Rev Immunol 10, 632-644.
    • (2010) Nat Rev Immunol , vol.10 , pp. 632-644
    • Ding, S.W.1
  • 17
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral immunity directed by small RNAs
    • Ding, S. W. & Voinnet, O. (2007). Antiviral immunity directed by small RNAs. Cell 130, 413-426.
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.W.1    Voinnet, O.2
  • 18
    • 2442583436 scopus 로고    scopus 로고
    • Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing
    • Dunoyer, P., Lecellier, C. H., Parizotto, E. A., Himber, C. & Voinnet, O. (2004). Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 16, 1235-1250.
    • (2004) Plant Cell , vol.16 , pp. 1235-1250
    • Dunoyer, P.1    Lecellier, C.H.2    Parizotto, E.A.3    Himber, C.4    Voinnet, O.5
  • 20
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21-and 22-nucleotide RNAs
    • Elbashir, S. M., Lendeckel, W. & Tuschl, T. (2001). RNA interference is mediated by 21-and 22-nucleotide RNAs. Genes Dev 15, 188-200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 21
    • 77950367420 scopus 로고    scopus 로고
    • Arabidopsis RNA-dependent RNA polymerases and Dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection
    • Garcia-Ruiz, H., Takeda, A., Chapman, E. J., Sullivan, C. M., Fahlgren, N., Brempelis, K. J. & Carrington, J. C. (2010). Arabidopsis RNA-dependent RNA polymerases and Dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection. Plant Cell 22, 481-496.
    • (2010) Plant Cell , vol.22 , pp. 481-496
    • Garcia-Ruiz, H.1    Takeda, A.2    Chapman, E.J.3    Sullivan, C.M.4    Fahlgren, N.5    Brempelis, K.J.6    Carrington, J.C.7
  • 23
    • 0035803562 scopus 로고    scopus 로고
    • Release of U18 snoRNA from its host intron requires interaction of Nop1p with the Rnt1p endonuclease
    • Giorgi, C., Fatica, A., Nagel, R. & Bozzoni, I. (2001). Release of U18 snoRNA from its host intron requires interaction of Nop1p with the Rnt1p endonuclease. EMBO J 20, 6856-6865.
    • (2001) EMBO J , vol.20 , pp. 6856-6865
    • Giorgi, C.1    Fatica, A.2    Nagel, R.3    Bozzoni, I.4
  • 24
    • 0033615491 scopus 로고    scopus 로고
    • A species of small antisense RNA in posttranscriptional gene silencing in plants
    • Hamilton, A. J. & Baulcombe, D. C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286, 950-952.
    • (1999) Science , vol.286 , pp. 950-952
    • Hamilton, A.J.1    Baulcombe, D.C.2
  • 25
    • 0034673638 scopus 로고    scopus 로고
    • An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
    • Hammond, S. M., Bernstein, E., Beach, D. & Hannon, G. J. (2000). An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404, 293-296.
    • (2000) Nature , vol.404 , pp. 293-296
    • Hammond, S.M.1    Bernstein, E.2    Beach, D.3    Hannon, G.J.4
  • 26
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • He, L. & Hannon, G. J. (2004). MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5, 522-531.
    • (2004) Nat Rev Genet , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 27
    • 77949361474 scopus 로고    scopus 로고
    • An ascovirusencoded RNase III autoregulates its expression and suppresses RNA interference-mediated gene silencing
    • Hussain, M., Abraham, A. M. & Asgari, S. (2010). An ascovirusencoded RNase III autoregulates its expression and suppresses RNA interference-mediated gene silencing. J Virol 84, 3624-3630.
    • (2010) J Virol , vol.84 , pp. 3624-3630
    • Hussain, M.1    Abraham, A.M.2    Asgari, S.3
  • 28
    • 77954128549 scopus 로고    scopus 로고
    • Protein mediated miRNA detection and siRNA enrichment using p19
    • Jin, J., Cid, M., Poole, C. B. & McReynolds, L. A. (2010). Protein mediated miRNA detection and siRNA enrichment using p19. Biotechniques 48, xvii-xxiii.
    • (2010) Biotechniques , vol.48
    • Jin, J.1    Cid, M.2    Poole, C.B.3    McReynolds, L.A.4
  • 29
    • 0034732230 scopus 로고    scopus 로고
    • Synergistic interactions of a potyvirus and a phloem-limited crinivirus in sweet potato plants
    • Karyeija, R. F., Kreuze, J. F., Gibson, R. W. & Valkonen, J. P. (2000). Synergistic interactions of a potyvirus and a phloem-limited crinivirus in sweet potato plants. Virology 269, 26-36.
    • (2000) Virology , vol.269 , pp. 26-36
    • Karyeija, R.F.1    Kreuze, J.F.2    Gibson, R.W.3    Valkonen, J.P.4
  • 31
    • 0036721315 scopus 로고    scopus 로고
    • Complete genome sequence and analyses of the subgenomic RNAs of Sweet potato chlorotic stunt virus reveal several new features for the genus Crinivirus
    • Kreuze, J. F., Savenkov, E. I. & Valkonen, J. P. (2002). Complete genome sequence and analyses of the subgenomic RNAs of Sweet potato chlorotic stunt virus reveal several new features for the genus Crinivirus. J Virol 76, 9260-9270.
    • (2002) J Virol , vol.76 , pp. 9260-9270
    • Kreuze, J.F.1    Savenkov, E.I.2    Valkonen, J.P.3
  • 32
    • 18744368470 scopus 로고    scopus 로고
    • Viral class 1 RNase III involved in suppression of RNA silencing
    • Kreuze, J. F., Savenkov, E. I., Cuellar, W., Li, X. & Valkonen, J. P. (2005). Viral class 1 RNase III involved in suppression of RNA silencing. J Virol 79, 7227-7238.
    • (2005) J Virol , vol.79 , pp. 7227-7238
    • Kreuze, J.F.1    Savenkov, E.I.2    Cuellar, W.3    Li, X.4    Valkonen, J.P.5
  • 33
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: MicroRNA target prediction easy, fast and flexible
    • Krüger, J. & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34 (Web Server issue), W451-W454.
    • (2006) Nucleic Acids Res , vol.34
    • Krüger, J.1    Rehmsmeier, M.2
  • 34
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 35
    • 1842614300 scopus 로고    scopus 로고
    • Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses
    • Lakatos, L., Szittya, G., Silhavy, D. & Burgyán, J. (2004). Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses. EMBO J 23, 876-884.
    • (2004) EMBO J , vol.23 , pp. 876-884
    • Lakatos, L.1    Szittya, G.2    Silhavy, D.3    Burgyán, J.4
  • 36
    • 84878282275 scopus 로고    scopus 로고
    • pH-sensitive residues in the p19 RNA silencing suppressor protein from carnation Italian ringspot virus affect siRNA binding stability
    • Law, S. M., Zhang, B. W. & Brooks, C. L., III (2013). pH-sensitive residues in the p19 RNA silencing suppressor protein from carnation Italian ringspot virus affect siRNA binding stability. Protein Sci 22, 595-604.
    • (2013) Protein Sci , vol.22 , pp. 595-604
    • Law, S.M.1    Zhang, B.W.2    Brooks III, C.L.3
  • 37
    • 33750361188 scopus 로고    scopus 로고
    • Virus counterdefense: Diverse strategies for evading the RNA-silencing immunity
    • Li, F. & Ding, S. W. (2006). Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annu Rev Microbiol 60, 503-531.
    • (2006) Annu Rev Microbiol , vol.60 , pp. 503-531
    • Li, F.1    Ding, S.W.2
  • 38
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs and siRNAs from a 39-end uridylation activity in Arabidopsis
    • Li, J., Yang, Z., Yu, B., Liu, J. & Chen, X. (2005). Methylation protects miRNAs and siRNAs from a 39-end uridylation activity in Arabidopsis. Curr Biol 15, 1501-1507.
    • (2005) Curr Biol , vol.15 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 39
    • 0037385251 scopus 로고    scopus 로고
    • Double-stranded RNAbinding proteins could suppress RNA interference-mediated antiviral defences
    • Lichner, Z., Silhavy, D. & Burgyán, J. (2003). Double-stranded RNAbinding proteins could suppress RNA interference-mediated antiviral defences. J Gen Virol 84, 975-980.
    • (2003) J Gen Virol , vol.84 , pp. 975-980
    • Lichner, Z.1    Silhavy, D.2    Burgyán, J.3
  • 41
    • 77952403409 scopus 로고    scopus 로고
    • Small silencingRNAs in plants are mobile and direct epigenetic modification in recipient cells
    • Molnar, A., Melnyk, C. W., Bassett, A., Hardcastle, T. J., Dunn, R. & Baulcombe, D. C. (2010). Small silencingRNAs in plants are mobile and direct epigenetic modification in recipient cells. Science 328, 872-875.
    • (2010) Science , vol.328 , pp. 872-875
    • Molnar, A.1    Melnyk, C.W.2    Bassett, A.3    Hardcastle, T.J.4    Dunn, R.5    Baulcombe, D.C.6
  • 43
    • 0032932638 scopus 로고    scopus 로고
    • Function, mechanism and regulation of bacterial ribonucleases
    • Nicholson, A. W. (1999). Function, mechanism and regulation of bacterial ribonucleases. FEMS Microbiol Rev 23, 371-390.
    • (1999) FEMS Microbiol Rev , vol.23 , pp. 371-390
    • Nicholson, A.W.1
  • 44
    • 0014408286 scopus 로고
    • Purification and properties of ribonuclease III fromEscherichia coli
    • Robertson, H. D., Webster, R. E. & Zinder, N. D. (1968). Purification and properties of ribonuclease III fromEscherichia coli. J Biol Chem 243, 82-91.
    • (1968) J Biol Chem , vol.243 , pp. 82-91
    • Robertson, H.D.1    Webster, R.E.2    Zinder, N.D.3
  • 45
    • 84866626156 scopus 로고    scopus 로고
    • MicroRNA turnover: When, how, and why
    • Rüegger, S. & Großhans, H. (2012). MicroRNA turnover: when, how, and why. Trends Biochem Sci 37, 436-446.
    • (2012) Trends Biochem Sci , vol.37 , pp. 436-446
    • Rüegger, S.1    Großhans, H.2
  • 47
    • 0026409298 scopus 로고
    • Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
    • Schägger, H. & von Jagow, G. (1991). Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal Biochem 199, 223-231.
    • (1991) Anal Biochem , vol.199 , pp. 223-231
    • Schägger, H.1    von Jagow, G.2
  • 48
    • 84877152813 scopus 로고    scopus 로고
    • Contribution of small RNA pathway components in plant immunity
    • Seo, J. K., Wu, J. G., Lii, Y. F., Li, Y. & Jin, H. L. (2013). Contribution of small RNA pathway components in plant immunity. Mol Plant Microbe Interact 26, 617-625.
    • (2013) Mol Plant Microbe Interact , vol.26 , pp. 617-625
    • Seo, J.K.1    Wu, J.G.2    Lii, Y.F.3    Li, Y.4    Jin, H.L.5
  • 49
    • 0037124354 scopus 로고    scopus 로고
    • A viral protein suppresses RNA silencing and binds silencing-generated, 21-to 25-nucleotide double-stranded RNAs
    • Silhavy, D., Molnár, A., Lucioli, A., Szittya, G., Hornyik, C., Tavazza, M. & Burgyán, J. (2002). A viral protein suppresses RNA silencing and binds silencing-generated, 21-to 25-nucleotide double-stranded RNAs. EMBO J 21, 3070-3080.
    • (2002) EMBO J , vol.21 , pp. 3070-3080
    • Silhavy, D.1    Molnár, A.2    Lucioli, A.3    Szittya, G.4    Hornyik, C.5    Tavazza, M.6    Burgyán, J.7
  • 50
    • 0036187553 scopus 로고    scopus 로고
    • RAC protein directs the complete removal of the 39 external transcribed spacer by the Pac1 nuclease
    • Spasov, K., Perdomo, L. I., Evakine, E. & Nazar, R. N. (2002). RAC protein directs the complete removal of the 39 external transcribed spacer by the Pac1 nuclease. Mol Cell 9, 433-437.
    • (2002) Mol Cell , vol.9 , pp. 433-437
    • Spasov, K.1    Perdomo, L.I.2    Evakine, E.3    Nazar, R.N.4
  • 51
    • 0034532497 scopus 로고    scopus 로고
    • Phylogenetic position of the Diadromus pulchellus ascovirus DNA polymerase among viruses with large double-stranded DNA genomes
    • Stasiak, K., Demattei, M. V., Federici, B. A. & Bigot, Y. (2000). Phylogenetic position of the Diadromus pulchellus ascovirus DNA polymerase among viruses with large double-stranded DNA genomes. J Gen Virol 81, 3059-3072.
    • (2000) J Gen Virol , vol.81 , pp. 3059-3072
    • Stasiak, K.1    Demattei, M.V.2    Federici, B.A.3    Bigot, Y.4
  • 52
    • 0033572660 scopus 로고    scopus 로고
    • Targeted mRNA degradation by double-stranded RNA in vitro
    • Tuschl, T., Zamore, P. D., Lehmann, R., Bartel, D. P. & Sharp, P. A. (1999). Targeted mRNA degradation by double-stranded RNA in vitro. Genes Dev 13, 3191-3197.
    • (1999) Genes Dev , vol.13 , pp. 3191-3197
    • Tuschl, T.1    Zamore, P.D.2    Lehmann, R.3    Bartel, D.P.4    Sharp, P.A.5
  • 53
    • 0347985826 scopus 로고    scopus 로고
    • Size selective recognition of siRNAby anRNAsilencing suppressor
    • Vargason, J. M., Szittya, G., Burgyán, J. & Hall, T. M. (2003). Size selective recognition of siRNAby anRNAsilencing suppressor. Cell 115, 799-811.
    • (2003) Cell , vol.115 , pp. 799-811
    • Vargason, J.M.1    Szittya, G.2    Burgyán, J.3    Hall, T.M.4
  • 55
    • 73449136828 scopus 로고    scopus 로고
    • Structure determinants for accurate processing of miR172a in Arabidopsis thaliana
    • Werner, S., Wollmann, H., Schneeberger, K. & Weigel, D. (2010). Structure determinants for accurate processing of miR172a in Arabidopsis thaliana. Curr Biol 20, 42-48.
    • (2010) Curr Biol , vol.20 , pp. 42-48
    • Werner, S.1    Wollmann, H.2    Schneeberger, K.3    Weigel, D.4
  • 56
    • 32644454064 scopus 로고    scopus 로고
    • HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 29 OH of the 39 terminal nucleotide
    • Yang, Z., Ebright, Y. W., Yu, B. & Chen, X. (2006). HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 29 OH of the 39 terminal nucleotide. Nucleic Acids Res 34, 667-675.
    • (2006) Nucleic Acids Res , vol.34 , pp. 667-675
    • Yang, Z.1    Ebright, Y.W.2    Yu, B.3    Chen, X.4
  • 58
    • 50849142874 scopus 로고    scopus 로고
    • Functional characterization of the RNase III gene of rock bream iridovirus
    • Zenke, K. & Kim, K. H. (2008). Functional characterization of the RNase III gene of rock bream iridovirus. Arch Virol 153, 1651-1656.
    • (2008) Arch Virol , vol.153 , pp. 1651-1656
    • Zenke, K.1    Kim, K.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.