-
1
-
-
84864717602
-
Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
-
doi: 10.1073/pnas.1203701109
-
Arita, K., Isogai, S., Oda, T., Unoki, M., Sugita, K., Sekiyama, N., et al. (2012). Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1. Proc. Natl. Acad. Sci. U.S.A. 109, 12950-12955. doi: 10.1073/pnas.1203701109.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 12950-12955
-
-
Arita, K.1
Isogai, S.2
Oda, T.3
Unoki, M.4
Sugita, K.5
Sekiyama, N.6
-
2
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
doi: 10.1016/j.cell.2010.10.012
-
Bartke, T., Vermeulen, M., Xhemalce, B., Robson, S. C., Mann, M., and Kouzarides, T. (2010). Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143, 470-484. doi: 10.1016/j.cell.2010.10.012.
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
Robson, S.C.4
Mann, M.5
Kouzarides, T.6
-
3
-
-
84859841455
-
HJURP uses distinct CENP-A surfaces to recognize and to stabilize CENP-A/Histone H4 for centromere assembly
-
doi: 10.1016/j.devcel.2012.02.001
-
Bassett, E. A., DeNizio, J., Barnhart-Dailey, M. C., Panchenko, T., Sekulic, N., Rogers, D. J., et al. (2012). HJURP uses distinct CENP-A surfaces to recognize and to stabilize CENP-A/Histone H4 for centromere assembly. Dev. Cell 22, 749-762. doi: 10.1016/j.devcel.2012.02.001.
-
(2012)
Dev. Cell
, vol.22
, pp. 749-762
-
-
Bassett, E.A.1
DeNizio, J.2
Barnhart-Dailey, M.C.3
Panchenko, T.4
Sekulic, N.5
Rogers, D.J.6
-
4
-
-
33947279176
-
An epigenetic mark generated by the incorporation of CENP-A into centromeric nucleosomes
-
doi: 10.1073/pnas.0700390104
-
Black, B. E., Brock, M. A., Bédard, S., Woods, V. L. Jr., and Cleveland, D. W. (2007). An epigenetic mark generated by the incorporation of CENP-A into centromeric nucleosomes. Proc. Natl. Acad. Sci. U.S.A. 104, 5008-5013. doi: 10.1073/pnas.0700390104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 5008-5013
-
-
Black, B.E.1
Brock, M.A.2
Bédard, S.3
Woods Jr., V.L.4
Cleveland, D.W.5
-
5
-
-
3242884785
-
Structural determinants for generating centromeric chromatin
-
doi: 10.1038/nature02766
-
Black, B. E., Foltz, D. R., Chakravarthy, S., Lugar, K., Woods, V. L. Jr., and Cleveland, D. W. (2004). Structural determinants for generating centromeric chromatin. Nature 430, 578-582. doi: 10.1038/nature02766.
-
(2004)
Nature
, vol.430
, pp. 578-582
-
-
Black, B.E.1
Foltz, D.R.2
Chakravarthy, S.3
Lugar, K.4
Woods Jr., V.L.5
Cleveland, D.W.6
-
6
-
-
36749030517
-
Analysis of dynamic changes in posttranslational modifications of human histones during cell cycle by mass spectrometry
-
doi: 10.1074/mcp.M700070-MCP200
-
Bonenfant, D., Towbin, H., Coulot, M., Schindler, P., Mueller, D. R., and van Oostrum, J. (2007). Analysis of dynamic changes in posttranslational modifications of human histones during cell cycle by mass spectrometry. Mol. Cell. Proteomics 6, 1917-1932. doi: 10.1074/mcp.M700070-MCP200.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1917-1932
-
-
Bonenfant, D.1
Towbin, H.2
Coulot, M.3
Schindler, P.4
Mueller, D.R.5
van Oostrum, J.6
-
7
-
-
32344452605
-
Precise characterization of human histones in the H2A gene family by top down mass spectrometry
-
doi: 10.1021/pr050269n
-
Boyne, M. T. II, Pesavento, J. J., Mizzen, C. A., and Kelleher, N. L. (2006). Precise characterization of human histones in the H2A gene family by top down mass spectrometry. J. Proteome Res. 5, 248-253. doi: 10.1021/pr050269n.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 248-253
-
-
Boyne II, M.T.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
8
-
-
80054774747
-
Breaking the histone code with quantitative mass spectrometry
-
doi: 10.1586/epr.11.47
-
Britton, L. P., Gonzales-Cope, M., Zee, B. M., and Garcia, B. A. (2011). Breaking the histone code with quantitative mass spectrometry. Expert Rev. Proteomics 8, 631-643. doi: 10.1586/epr.11.47.
-
(2011)
Expert Rev. Proteomics
, vol.8
, pp. 631-643
-
-
Britton, L.P.1
Gonzales-Cope, M.2
Zee, B.M.3
Garcia, B.A.4
-
9
-
-
33749615256
-
Mass spectrometry: bottom-up or top-down?
-
doi: 10.1126/science.1133987
-
Chait, B. T. (2006). Mass spectrometry: bottom-up or top-down? Science 314, 65-66. doi: 10.1126/science.1133987.
-
(2006)
Science
, vol.314
, pp. 65-66
-
-
Chait, B.T.1
-
10
-
-
77951241293
-
Chemical approaches for studying histone modifications
-
doi: 10.1074/jbc.R109.080291
-
Chatterjee, C., and Muir, T. W. (2010). Chemical approaches for studying histone modifications. J. Biol. Chem. 285, 11045-11050. doi: 10.1074/jbc.R109.080291.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 11045-11050
-
-
Chatterjee, C.1
Muir, T.W.2
-
11
-
-
79952281056
-
Symmetrical modification within a nucleosome is not required globally for histone lysine methylation
-
doi: 10.1038/embor.2011.6
-
Chen, X., Xiong, J., Xu, M., Chen, S., and Zhu, B. (2011). Symmetrical modification within a nucleosome is not required globally for histone lysine methylation. EMBO Rep. 12, 244-251. doi: 10.1038/embor.2011.6.
-
(2011)
EMBO Rep.
, vol.12
, pp. 244-251
-
-
Chen, X.1
Xiong, J.2
Xu, M.3
Chen, S.4
Zhu, B.5
-
12
-
-
34248640428
-
Lysine propionylation and butyrylation are novel post-translational modifications in histones
-
doi: 10.1074/mcp.M700021-MCP200
-
Chen, Y., Sprung, R., Tang, Y., Ball, H., Sangras, B., Kim, S. C., et al. (2007). Lysine propionylation and butyrylation are novel post-translational modifications in histones. Mol. Cell. Proteomics 6, 812-819. doi: 10.1074/mcp.M700021-MCP200.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 812-819
-
-
Chen, Y.1
Sprung, R.2
Tang, Y.3
Ball, H.4
Sangras, B.5
Kim, S.C.6
-
13
-
-
84861868041
-
H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence
-
doi: 10.1073/pnas.1119836109
-
Chicas, A., Kapoor, A., Wang, X., Aksoy, O., Evertts, A. G., Zhang, M. Q., et al. (2012). H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. Proc. Natl. Acad. Sci. U.S.A. 109, 8971-8976. doi: 10.1073/pnas.1119836109.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 8971-8976
-
-
Chicas, A.1
Kapoor, A.2
Wang, X.3
Aksoy, O.4
Evertts, A.G.5
Zhang, M.Q.6
-
14
-
-
77949860250
-
Single molecule epigenetic analysis in a nanofluidic channel
-
doi: 10.1021/ac9028642
-
Cipriany, B. R., Zhao, R., Murphy, P. J., Levy, S. L., Tan, C. P., Craighead, H. G., et al. (2010). Single molecule epigenetic analysis in a nanofluidic channel. Anal. Chem. 82, 2480-2487. doi: 10.1021/ac9028642.
-
(2010)
Anal. Chem.
, vol.82
, pp. 2480-2487
-
-
Cipriany, B.R.1
Zhao, R.2
Murphy, P.J.3
Levy, S.L.4
Tan, C.P.5
Craighead, H.G.6
-
15
-
-
34548312353
-
Histone proteomics and the epigenetic regulation of nucleosome mobility
-
doi: 10.1586/14789450.4.4.465
-
Cosgrove, M. S. (2007). Histone proteomics and the epigenetic regulation of nucleosome mobility. Expert Rev. Proteomics 4, 465-478. doi: 10.1586/14789450.4.4.465.
-
(2007)
Expert Rev. Proteomics
, vol.4
, pp. 465-478
-
-
Cosgrove, M.S.1
-
16
-
-
79960281535
-
SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells
-
doi: 10.1007/s00726-010-0668-2
-
Cuomo, A., Moretti, S., Minucci, S., and Bonaldi, T. (2011). SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells. Amino Acids 41, 387-399. doi: 10.1007/s00726-010-0668-2.
-
(2011)
Amino Acids
, vol.41
, pp. 387-399
-
-
Cuomo, A.1
Moretti, S.2
Minucci, S.3
Bonaldi, T.4
-
17
-
-
84883785467
-
Chaperone Nap1 shields histone surfaces used in a nucleosome and can put H2A-H2B in an unconventional tetrameric form
-
doi: 10.1016/j.molcel.2013.07.015
-
D'Arcy, S., Martin, K. W., Panchenko, T., Chen, X., Bergeron, S., Stargell, L. A., et al. (2013). Chaperone Nap1 shields histone surfaces used in a nucleosome and can put H2A-H2B in an unconventional tetrameric form. Mol. Cell 51, 662-677. doi: 10.1016/j.molcel.2013.07.015.
-
(2013)
Mol. Cell
, vol.51
, pp. 662-677
-
-
D'Arcy, S.1
Martin, K.W.2
Panchenko, T.3
Chen, X.4
Bergeron, S.5
Stargell, L.A.6
-
18
-
-
84857451064
-
Designer proteins: applications of genetic code expansion in cell biology
-
doi: 10.1038/nrm3286
-
Davis, L., and Chin, J. W. (2012). Designer proteins: applications of genetic code expansion in cell biology. Nat. Rev. Mol. Cell Biol. 13, 168-182. doi: 10.1038/nrm3286.
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 168-182
-
-
Davis, L.1
Chin, J.W.2
-
19
-
-
0027944205
-
Synthesis of proteins by native chemical ligation
-
doi: 10.1126/science.7973629
-
Dawson, P. E., Muir, T. W., Clark-Lewis, I., and Kent, S. B. H. (1994). Synthesis of proteins by native chemical ligation. Science 266, 776-779. doi: 10.1126/science.7973629.
-
(1994)
Science
, vol.266
, pp. 776-779
-
-
Dawson, P.E.1
Muir, T.W.2
Clark-Lewis, I.3
Kent, S.B.H.4
-
20
-
-
78751516164
-
Quantitative proteomics for epigenetics
-
doi: 10.1002/cbic.201000429
-
Eberl, H. C., Mann, M., and Vermeulen, M. (2011). Quantitative proteomics for epigenetics. Chem. Bio. Chem. 12, 224-234. doi: 10.1002/cbic.201000429.
-
(2011)
Chem. Bio. Chem.
, vol.12
, pp. 224-234
-
-
Eberl, H.C.1
Mann, M.2
Vermeulen, M.3
-
21
-
-
84869886446
-
DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition
-
doi: 10.1038/nature11608
-
Elsässer, S. J., Huang, H., Lewis, P. W., Chin, J. W., Allis, C. D., and Patel, D. J. (2012). DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition. Nature 491, 560-565. doi: 10.1038/nature11608.
-
(2012)
Nature
, vol.491
, pp. 560-565
-
-
Elsässer, S.J.1
Huang, H.2
Lewis, P.W.3
Chin, J.W.4
Allis, C.D.5
Patel, D.J.6
-
22
-
-
33750320427
-
Hydrogen exchange and mass spectrometry: a historical perspective
-
doi: 10.1016/j.jasms.2006.06.006
-
Englander, S. W. (2006). Hydrogen exchange and mass spectrometry: a historical perspective. J. Am. Soc. Mass Spectrom. 17, 1481-1489. doi: 10.1016/j.jasms.2006.06.006.
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1481-1489
-
-
Englander, S.W.1
-
23
-
-
84876898716
-
Quantitative dynamics of the link between cellular metabolism and histone acetylation
-
doi: 10.1074/jbc.M112.428318
-
Evertts, A. G., Zee, B. M., DiMaggio, P. A., Gonzales-Cope, M., Coller, H. A., and Garcia, B. A. (2013). Quantitative dynamics of the link between cellular metabolism and histone acetylation. J. Biol. Chem. 288, 12142-12151. doi: 10.1074/jbc.M112.428318.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 12142-12151
-
-
Evertts, A.G.1
Zee, B.M.2
DiMaggio, P.A.3
Gonzales-Cope, M.4
Coller, H.A.5
Garcia, B.A.6
-
24
-
-
78751515133
-
Histone H2B ubiquitylation disrupts local and higher order chromatin compaction
-
doi: 10.1038/nchembio.501
-
Fierz, B., Chatterjee, C., McGinty, R. K., Bar-Dagan, M., Raleigh, D. P., and Muir, T. W. (2011). Histone H2B ubiquitylation disrupts local and higher order chromatin compaction. Nat. Chem. Biol. 7, 113-119. doi: 10.1038/nchembio.501.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 113-119
-
-
Fierz, B.1
Chatterjee, C.2
McGinty, R.K.3
Bar-Dagan, M.4
Raleigh, D.P.5
Muir, T.W.6
-
25
-
-
84859836380
-
Chromatin as an expansive canvas for chemical biology
-
doi: 10.1038/nchembio.938
-
Fierz, B., and Muir, T. W. (2012). Chromatin as an expansive canvas for chemical biology. Nat. Chem. Biol. 8, 417-427. doi: 10.1038/nchembio.938.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 417-427
-
-
Fierz, B.1
Muir, T.W.2
-
26
-
-
28844477653
-
Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation
-
doi: 10.1038/nature04219
-
Fischle, W., Tseng, B. S., Dormann, H. L., Ueberheide, B. M., Garcia, B. A., Shabanowitz, J., et al. (2005). Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 438, 1116-1122. doi: 10.1038/nature04219.
-
(2005)
Nature
, vol.438
, pp. 1116-1122
-
-
Fischle, W.1
Tseng, B.S.2
Dormann, H.L.3
Ueberheide, B.M.4
Garcia, B.A.5
Shabanowitz, J.6
-
27
-
-
46149091721
-
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation
-
doi: 10.1016/j.molcel.2008.04.025
-
Fleming, A. B., Kao, C. F., Hillyer, C., Pikaart, M., and Osley, M. A. (2008). H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation. Mol. Cell 31, 57-66. doi: 10.1016/j.molcel.2008.04.025.
-
(2008)
Mol. Cell
, vol.31
, pp. 57-66
-
-
Fleming, A.B.1
Kao, C.F.2
Hillyer, C.3
Pikaart, M.4
Osley, M.A.5
-
28
-
-
33745146571
-
Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells
-
doi: 10.1101/gad.388206
-
Fodor, B. D., Kubicek, S., Yonezawa, M., O'Sullivan, R. J., Sengupta, R., Perez-Burgos, L., et al. (2006). Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells. Genes Dev. 20, 1557-1562. doi: 10.1101/gad.388206.
-
(2006)
Genes Dev.
, vol.20
, pp. 1557-1562
-
-
Fodor, B.D.1
Kubicek, S.2
Yonezawa, M.3
O'Sullivan, R.J.4
Sengupta, R.5
Perez-Burgos, L.6
-
29
-
-
70349334708
-
Nucleosome disassembly intermediates characterized by single molecule FRET
-
doi: 10.1073/pnas.0903005106
-
Gansen, A., Valeri, A., Hauger, F., Felekyan, S., Kalinin, S., Tóth, K., et al. (2009). Nucleosome disassembly intermediates characterized by single molecule FRET. Proc. Natl. Acad. Sci. U.S.A. 106, 15308-15313. doi: 10.1073/pnas.0903005106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 15308-15313
-
-
Gansen, A.1
Valeri, A.2
Hauger, F.3
Felekyan, S.4
Kalinin, S.5
Tóth, K.6
-
30
-
-
34248577604
-
Chemical derivatization of histones for facilitated analysis by mass spectrometry
-
doi: 10.1038/nprot.2007.106
-
Garcia, B. A., Mollah, S., Ueberheide, B. M., Busby, S. A., Muratore, T. L., Shabanowitz, J., et al. (2007a). Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nat. Protoc. 2, 933-938. doi: 10.1038/nprot.2007.106.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 933-938
-
-
Garcia, B.A.1
Mollah, S.2
Ueberheide, B.M.3
Busby, S.A.4
Muratore, T.L.5
Shabanowitz, J.6
-
31
-
-
34249779529
-
Pervasive combinatorial modification of histone H3 in human cells
-
doi: 10.1038/nmeth1052
-
Garcia, B. A., Pesavento, J. J., Mizzen, C. A., and Kelleher, N. L. (2007b). Pervasive combinatorial modification of histone H3 in human cells. Nat. Methods 4, 487-489. doi: 10.1038/nmeth1052.
-
(2007)
Nat. Methods
, vol.4
, pp. 487-489
-
-
Garcia, B.A.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
32
-
-
55949087964
-
Tissue-specific expression and post-translational modification of histone H3 variants
-
doi: 10.1021/pr800044q
-
Garcia, B. A., Thomas, C. E., Kelleher, N. L., and Mizzen, C. A. (2008). Tissue-specific expression and post-translational modification of histone H3 variants. J. Proteome Res. 7, 4225-4236. doi: 10.1021/pr800044q.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4225-4236
-
-
Garcia, B.A.1
Thomas, C.E.2
Kelleher, N.L.3
Mizzen, C.A.4
-
33
-
-
84881478663
-
Histone H3 glutathionylation in proliferating mammalian cells destabilizes nucleosomal structure
-
doi: 10.1089/ars.2012.5021
-
García-Giménez, J. L., Olaso, G., Hake, S. B., Bönisch, C., Wiedemann, S. M., Markovic, J., et al. (2013). Histone H3 glutathionylation in proliferating mammalian cells destabilizes nucleosomal structure. Antioxid. Redox Signal. 19, 1305-1320. doi: 10.1089/ars.2012.5021.
-
(2013)
Antioxid. Redox Signal.
, vol.19
, pp. 1305-1320
-
-
García-Giménez, J.L.1
Olaso, G.2
Hake, S.B.3
Bönisch, C.4
Wiedemann, S.M.5
Markovic, J.6
-
34
-
-
48649109948
-
A combinatorial H4 tail library for exploring the histone code
-
doi: 10.1021/bi800766k
-
Garske, A. L., Craciun, G., and Denu, J. M. (2008). A combinatorial H4 tail library for exploring the histone code. Biochemistry 47, 8094-8102. doi: 10.1021/bi800766k.
-
(2008)
Biochemistry
, vol.47
, pp. 8094-8102
-
-
Garske, A.L.1
Craciun, G.2
Denu, J.M.3
-
35
-
-
77949874334
-
Combinatorial profiling of chromatin binding modules reveals multisite discrimination
-
doi: 10.1038/NCHEMBIO.319
-
Garske, A. L., Oliver, S. S., Wagner, E. K., Musselman, C. A., LeRoy, G., Garcia, B. A., et al. (2010). Combinatorial profiling of chromatin binding modules reveals multisite discrimination. Nat. Chem. Biol. 6, 283-290. doi: 10.1038/NCHEMBIO.319.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 283-290
-
-
Garske, A.L.1
Oliver, S.S.2
Wagner, E.K.3
Musselman, C.A.4
LeRoy, G.5
Garcia, B.A.6
-
36
-
-
84870906814
-
Synthesis of ε-N-propionyl-, ε-N-butyryl-, and ε-Ncrotonyl-lysine containing histone H3 using the pyrrolysine system
-
doi: 10.1039/c2cc37836a
-
Gattner, M. J., Vrabel, M., and Carell, T. (2013). Synthesis of ε-N-propionyl-, ε-N-butyryl-, and ε-Ncrotonyl-lysine containing histone H3 using the pyrrolysine system. Chem. Commun. 49, 379-381. doi: 10.1039/c2cc37836a.
-
(2013)
Chem. Commun.
, vol.49
, pp. 379-381
-
-
Gattner, M.J.1
Vrabel, M.2
Carell, T.3
-
37
-
-
52049083084
-
Site-specific incorporation of methyl-and acetyl-lysine analogues into recombinant proteins
-
doi: 10.1002/anie.200802336
-
Guo, J., Wang, J., Lee, J. S., and Schultz, P. G. (2008). Site-specific incorporation of methyl-and acetyl-lysine analogues into recombinant proteins. Angew. Chem. Int. Ed. Engl. 47, 6399-6401. doi: 10.1002/anie.200802336.
-
(2008)
Angew. Chem. Int. Ed. Engl.
, vol.47
, pp. 6399-6401
-
-
Guo, J.1
Wang, J.2
Lee, J.S.3
Schultz, P.G.4
-
38
-
-
77956916411
-
Peptide arrays identify isoform-selective substrates for profiling endogenous lysine deacetylase activity
-
doi: 10.1021/cb100088g
-
Gurard-Levin, Z. A., Kilian, K. A., Kim, J., Bähr, K., and Mrksich, M. (2010). Peptide arrays identify isoform-selective substrates for profiling endogenous lysine deacetylase activity. ACS Chem. Biol. 5, 863-873. doi: 10.1021/cb100088g.
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 863-873
-
-
Gurard-Levin, Z.A.1
Kilian, K.A.2
Kim, J.3
Bähr, K.4
Mrksich, M.5
-
39
-
-
44949231404
-
The activity of HDAC8 depends on local and distal sequences of its peptide substrates
-
doi: 10.1021/bi800053v
-
Gurard-Levin, Z. A., and Mrksich, M. (2008). The activity of HDAC8 depends on local and distal sequences of its peptide substrates. Biochemistry 47, 6242-6250. doi: 10.1021/bi800053v.
-
(2008)
Biochemistry
, vol.47
, pp. 6242-6250
-
-
Gurard-Levin, Z.A.1
Mrksich, M.2
-
40
-
-
84878931770
-
The octamer is the major form of CENP-A nucleosomes at human centromeres
-
doi: 10.1038/nsmb.2562
-
Hasson, D., Panchenko, T., Salimian, K. J., Salman, M. U., Sekulic, N., Alonso, A., et al. (2013). The octamer is the major form of CENP-A nucleosomes at human centromeres. Nat. Struct. Mol. Biol. 20, 687-695. doi: 10.1038/nsmb.2562.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 687-695
-
-
Hasson, D.1
Panchenko, T.2
Salimian, K.J.3
Salman, M.U.4
Sekulic, N.5
Alonso, A.6
-
41
-
-
34547128660
-
Protein-protein förster resonance energy transfer analysis of nucleosome core particles containing H2A and H2A.Z
-
doi: 10.1016/j.jmb.2007.05.075
-
Hoch, D. A., Stratton, J. J., and Gloss, L. M. (2007). Protein-protein förster resonance energy transfer analysis of nucleosome core particles containing H2A and H2A.Z. J. Mol. Biol. 371, 971-988. doi: 10.1016/j.jmb.2007.05.075.
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 971-988
-
-
Hoch, D.A.1
Stratton, J.J.2
Gloss, L.M.3
-
42
-
-
84879883663
-
Structural basis of histone H2A-H2B recognition by the essential chaperone FACT
-
doi: 10.1038/nature12242
-
Hondele, M., Stuwe, T., Hassler, M., Halbach, F., Bowman, A., Zhang, E. T., et al. (2013). Structural basis of histone H2A-H2B recognition by the essential chaperone FACT. Nature 499, 111-114. doi: 10.1038/nature12242.
-
(2013)
Nature
, vol.499
, pp. 111-114
-
-
Hondele, M.1
Stuwe, T.2
Hassler, M.3
Halbach, F.4
Bowman, A.5
Zhang, E.T.6
-
43
-
-
0034717183
-
Structure and function of a human TAFII250 double bromodomain module
-
doi: 10.1126/science.288.5470.1422
-
Jacobson, R. H., Ladurner, A. G., King, D. S., and Tjian, R. (2000). Structure and function of a human TAFII250 double bromodomain module. Science 288, 1422-1425. doi: 10.1126/science.288.5470.1422.
-
(2000)
Science
, vol.288
, pp. 1422-1425
-
-
Jacobson, R.H.1
Ladurner, A.G.2
King, D.S.3
Tjian, R.4
-
44
-
-
0035839136
-
Translating the histone code
-
doi: 10.1126/science.1063127
-
Jenuwein, T., and Allis, C. D. (2001). Translating the histone code. Science 293, 1074-1079. doi: 10.1126/science.1063127.
-
(2001)
Science
, vol.293
, pp. 1074-1079
-
-
Jenuwein, T.1
Allis, C.D.2
-
45
-
-
77951855269
-
Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at lys-27 and lys-36
-
doi: 10.1074/mcp.M900489-MCP200
-
Jung, H. R., Pasini, D., Helin, K., and Jenson, O. N. (2010). Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at lys-27 and lys-36. Mol. Cell. Proteomics 9, 838-850. doi: 10.1074/mcp.M900489-MCP200.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 838-850
-
-
Jung, H.R.1
Pasini, D.2
Helin, K.3
Jenson, O.N.4
-
46
-
-
84865820312
-
Atomic force microscopy on chromosomes, chromatin and DNA: a review
-
doi: 10.1016/j.micron.2012.04.004
-
Kalle, W., and Strappe, P. (2012). Atomic force microscopy on chromosomes, chromatin and DNA: a review. Micron 43, 1224-1231. doi: 10.1016/j.micron.2012.04.004.
-
(2012)
Micron
, vol.43
, pp. 1224-1231
-
-
Kalle, W.1
Strappe, P.2
-
47
-
-
79961085477
-
Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR
-
doi: 10.1073/pnas.1105848108
-
Kato, H., van Ingen, H., Zhou, B., Feng, H., Bustin, M., Kay, L. E., et al. (2011). Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR. Proc. Natl. Acad. Sci. U.S.A. 108, 12283-12288. doi: 10.1073/pnas.1105848108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12283-12288
-
-
Kato, H.1
van Ingen, H.2
Zhou, B.3
Feng, H.4
Bustin, M.5
Kay, L.E.6
-
48
-
-
84857034648
-
Recent advances in single molecule studies of nucleosomes
-
doi: 10.1016/j.sbi.2011.11.003
-
Killian, J. L., Li, M., Sheinin, M. Y., and Wang, M. D. (2012). Recent advances in single molecule studies of nucleosomes. Curr. Opin. Struct. Biol. 22, 80-87. doi: 10.1016/j.sbi.2011.11.003.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 80-87
-
-
Killian, J.L.1
Li, M.2
Sheinin, M.Y.3
Wang, M.D.4
-
49
-
-
84863837242
-
Site-specific incorporation of ε-N-crotonyllysine into histones
-
doi: 10.1002/anie.201203349
-
Kim, C. H., Kang, M., Kim, H. J., Chatterjee, A., and Schultz, P. G. (2012). Site-specific incorporation of ε-N-crotonyllysine into histones. Angew. Chem. Int. Ed. 51, 7246-7249. doi: 10.1002/anie.201203349.
-
(2012)
Angew. Chem. Int. Ed.
, vol.51
, pp. 7246-7249
-
-
Kim, C.H.1
Kang, M.2
Kim, H.J.3
Chatterjee, A.4
Schultz, P.G.5
-
50
-
-
33645502395
-
Tudor, MBT and chromo domains gauge the degree of lysine methylation
-
doi: 10.1038/sj.embor.7400625
-
Kim, J., Daniel, J., Espejo, A., Lake, A., Krishna, M., Xia, L., et al. (2006). Tudor, MBT and chromo domains gauge the degree of lysine methylation. EMBO Rep. 7, 397-403. doi: 10.1038/sj.embor.7400625.
-
(2006)
EMBO Rep.
, vol.7
, pp. 397-403
-
-
Kim, J.1
Daniel, J.2
Espejo, A.3
Lake, A.4
Krishna, M.5
Xia, L.6
-
51
-
-
0015984408
-
Substrate specificity of a histone deacetylase from calf thymus nuclei
-
Krieger, D. E., Levine, R., Merrifield, R. B., Vidali, G., and Allfrey, V. G. (1974). Substrate specificity of a histone deacetylase from calf thymus nuclei. J. Biol. Chem. 249, 332-334.
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 332-334
-
-
Krieger, D.E.1
Levine, R.2
Merrifield, R.B.3
Vidali, G.4
Allfrey, V.G.5
-
52
-
-
79953175642
-
Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes
-
doi: 10.1074/jbc.M110.192047
-
Lee, J. Y., Wei, S., and Lee, T. (2011). Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes. J. Biol. Chem. 286, 11099-11109. doi: 10.1074/jbc.M110.192047.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 11099-11109
-
-
Lee, J.Y.1
Wei, S.2
Lee, T.3
-
53
-
-
80053557477
-
A direct method for site-specific protein acetylation
-
doi: 10.1002/anie.201103754
-
Li, F., Allahverdi, A., Yang, R., Lua, G. B. J., Zhang, X., Cao, Y., et al. (2011). A direct method for site-specific protein acetylation. Angew. Chem. Int. Ed. 50, 9611-9614. doi: 10.1002/anie.201103754.
-
(2011)
Angew. Chem. Int. Ed.
, vol.50
, pp. 9611-9614
-
-
Li, F.1
Allahverdi, A.2
Yang, R.3
Lua, G.B.J.4
Zhang, X.5
Cao, Y.6
-
54
-
-
84863079871
-
Quantitative chemical proteomics approach to identify post-translational modification-mediated protein-protein interactions
-
doi: 10.1021/ja210528v
-
Li, X., Foley, E. A., Molloy, K. R., Li, Y., Chait, B. T., and Kapoor, T. M. (2012). Quantitative chemical proteomics approach to identify post-translational modification-mediated protein-protein interactions. J. Am. Chem. Soc. 134, 1982-1985. doi: 10.1021/ja210528v.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 1982-1985
-
-
Li, X.1
Foley, E.A.2
Molloy, K.R.3
Li, Y.4
Chait, B.T.5
Kapoor, T.M.6
-
55
-
-
84870807717
-
Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX
-
doi: 10.1038/nsmb.2439
-
Liu, C., Xiong, C., Wang, M., Yu, Z., Yang, N., Chen, P., et al. (2012). Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX. Nat. Struct. Mol. Biol. 19, 1287-1292. doi: 10.1038/nsmb.2439.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1287-1292
-
-
Liu, C.1
Xiong, C.2
Wang, M.3
Yu, Z.4
Yang, N.5
Chen, P.6
-
56
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
doi: 10.1038/38444
-
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997). Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260. doi: 10.1038/38444.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
57
-
-
69949176722
-
Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding
-
doi: 10.1074/jbc.M109.003202
-
Manohar, M., Mooney, A. M., North, J. A., Nakkula, R. J., Picking, J. W., Edon, A., et al. (2009). Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding. J. Biol. Chem. 284, 23312-23321. doi: 10.1074/jbc.M109.003202.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 23312-23321
-
-
Manohar, M.1
Mooney, A.M.2
North, J.A.3
Nakkula, R.J.4
Picking, J.W.5
Edon, A.6
-
58
-
-
80052704421
-
Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy
-
doi: 10.1021/bi200946z
-
Miyagi, A., Ando, T., and Lyubchenko, Y. L. (2011). Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy. Biochemistry 50, 7901-7908. doi: 10.1021/bi200946z.
-
(2011)
Biochemistry
, vol.50
, pp. 7901-7908
-
-
Miyagi, A.1
Ando, T.2
Lyubchenko, Y.L.3
-
59
-
-
70349669271
-
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain
-
doi: 10.1038/nature08397
-
Morinière, J., Rousseaux, S., Steuerwald, U., Soler-López, M., Curtet, S., Vitte, A., et al. (2009). Cooperative binding of two acetylation marks on a histone tail by a single bromodomain. Nature 461, 664-668. doi: 10.1038/nature08397.
-
(2009)
Nature
, vol.461
, pp. 664-668
-
-
Morinière, J.1
Rousseaux, S.2
Steuerwald, U.3
Soler-López, M.4
Curtet, S.5
Vitte, A.6
-
60
-
-
0032499752
-
Expressed protein ligation: a general method for protein engineering
-
doi: 10.1073/pnas.95.12.6705
-
Muir, T. W., Sondhi, D., and Cole, P. A. (1998). Expressed protein ligation: a general method for protein engineering. Proc. Natl. Acad. Sci. U.S.A. 95, 6705-6710. doi: 10.1073/pnas.95.12.6705.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 6705-6710
-
-
Muir, T.W.1
Sondhi, D.2
Cole, P.A.3
-
61
-
-
84877318097
-
Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells
-
doi: 10.1073/pnas.1218495110
-
Murphy, P. J., Cipriany, B. R., Wallin, C. B., Ju, C. Y., Szeto, K., Hagarman, J. A., et al. (2013). Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells. Proc. Natl. Acad. Sci. U.S.A. 110, 7772-7777. doi: 10.1073/pnas.1218495110.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 7772-7777
-
-
Murphy, P.J.1
Cipriany, B.R.2
Wallin, C.B.3
Ju, C.Y.4
Szeto, K.5
Hagarman, J.A.6
-
62
-
-
84870792079
-
Perceiving the epigenetic landscape through histone readers
-
doi: 10.1038/nsmb.2436
-
Musselman, C. A., Lalonde, M., Côté, J., and Kutateladze, T. G. (2012). Perceiving the epigenetic landscape through histone readers. Nat. Struct. Mol. Biol. 12, 1218-1227. doi: 10.1038/nsmb.2436.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 1218-1227
-
-
Musselman, C.A.1
Lalonde, M.2
Côté, J.3
Kutateladze, T.G.4
-
63
-
-
70349765673
-
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation
-
doi: 10.1016/j.molcel.2009.07.027
-
Neumann, H., Hancock, S. M., Buning, R., Routh, A., Chapman, L., Somers, J., et al. (2009). A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation. Mol. Cell 36, 153-163. doi: 10.1016/j.molcel.2009.07.027.
-
(2009)
Mol. Cell
, vol.36
, pp. 153-163
-
-
Neumann, H.1
Hancock, S.M.2
Buning, R.3
Routh, A.4
Chapman, L.5
Somers, J.6
-
64
-
-
80555136767
-
Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns
-
doi: 10.1074/mcp.M110.005371
-
Nikolov, M., Stutzer, A., Mosch, K., Krasauskas, A., Soeroes, S., Stark, H., et al. (2011). Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns. Mol. Cell. Proteomics 10, 1-16. doi: 10.1074/mcp.M110.005371.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. 1-16
-
-
Nikolov, M.1
Stutzer, A.2
Mosch, K.3
Krasauskas, A.4
Soeroes, S.5
Stark, H.6
-
65
-
-
0037098044
-
Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association
-
doi: 10.1101/gad.1001502
-
Ng, H. H., Feng, Q., Wang, H., Erdjument-Bromage, H., Tempst, P., Zhang, Y., et al. (2002). Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association. Genes Dev. 16, 1518-1527. doi: 10.1101/gad.1001502.
-
(2002)
Genes Dev.
, vol.16
, pp. 1518-1527
-
-
Ng, H.H.1
Feng, Q.2
Wang, H.3
Erdjument-Bromage, H.4
Tempst, P.5
Zhang, Y.6
-
66
-
-
70349918614
-
Genetically encoding Nε-methyl-L-lysine in recombinant histones
-
doi: 10.1021/ja906603s
-
Nguyen, D. P., Garcia Alai, M. M., Kapandnis, P. B., Neumann, H., and Chin, J. W. (2009). Genetically encoding Nε-methyl-L-lysine in recombinant histones. J. Am. Chem. Soc. 131, 14194-14195. doi: 10.1021/ja906603s.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 14194-14195
-
-
Nguyen, D.P.1
Garcia Alai, M.M.2
Kapandnis, P.B.3
Neumann, H.4
Chin, J.W.5
-
67
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
doi: 10.1074/mcp.T400003-MCP200
-
Olsen, J. V., Ong, S. E., and Mann, M. (2004). Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell. Proteomics 3, 608-614. doi: 10.1074/mcp.T400003-MCP200.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
68
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
doi: 10.1074/mcp.M200025-MCP200
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., et al. (2002). Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386. doi: 10.1074/mcp.M200025-MCP200.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
-
69
-
-
18744375196
-
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
-
doi: 10.1038/nmeth715
-
Ong, S. E., Mittler, G., and Mann, M. (2004). Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nat. Methods 1, 119-126. doi: 10.1038/nmeth715.
-
(2004)
Nat. Methods
, vol.1
, pp. 119-126
-
-
Ong, S.E.1
Mittler, G.2
Mann, M.3
-
70
-
-
80053653297
-
Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini
-
doi: 10.1073/pnas.1113621108
-
Panchenko, T., Sorensen, T. C., Woodcock, C. L., Kan, Z., Wood, S., Resch, M. G., et al. (2011). Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini. Proc. Natl. Acad. Sci. U.S.A. 108, 16588-16593. doi: 10.1073/pnas.1113621108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 16588-16593
-
-
Panchenko, T.1
Sorensen, T.C.2
Woodcock, C.L.3
Kan, Z.4
Wood, S.5
Resch, M.G.6
-
71
-
-
2642515598
-
A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome
-
doi: 10.1074/jbc.M313152200
-
Park, Y., Dyer, P. N., Tremethick, D. J., and Luger, K. (2004). A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome. J. Biol. Chem. 279, 24274-24282. doi: 10.1074/jbc.M313152200.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 24274-24282
-
-
Park, Y.1
Dyer, P.N.2
Tremethick, D.J.3
Luger, K.4
-
72
-
-
47249157351
-
Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry
-
doi: 10.1074/jbc.M709796200
-
Pesavento, J. J., Bullock, C. R., LeDuc, R. D., Mizzen, C. A., and Kelleher, N. L. (2008). Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry. J. Biol. Chem. 283, 14927-14937. doi: 10.1074/jbc.M709796200.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 14927-14937
-
-
Pesavento, J.J.1
Bullock, C.R.2
LeDuc, R.D.3
Mizzen, C.A.4
Kelleher, N.L.5
-
73
-
-
84886383360
-
Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions
-
doi: 10.1073/pnas.1314862110
-
Phelps, C., Lee, W., Jose, D., von Hippel, P. H., and Marcus, A. H. (2013). Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions. Proc. Natl. Acad. Sci. U.S.A. 110, 17320-17325. doi: 10.1073/pnas.1314862110.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 17320-17325
-
-
Phelps, C.1
Lee, W.2
Jose, D.3
von Hippel, P.H.4
Marcus, A.H.5
-
74
-
-
79952017487
-
Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown
-
doi: 10.1039/c003307c
-
Plazas-Mayorca, M. D., Bloom, J. S., Zeissler, U., Leroy, G., Young, N. L., DiMaggio, P. A., et al. (2010). Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown. Mol. Biosyst. 6, 1719-1729. doi: 10.1039/c003307c.
-
(2010)
Mol. Biosyst.
, vol.6
, pp. 1719-1729
-
-
Plazas-Mayorca, M.D.1
Bloom, J.S.2
Zeissler, U.3
Leroy, G.4
Young, N.L.5
DiMaggio, P.A.6
-
75
-
-
70449450290
-
One-pot shotgun quantitative mass spectrometry characterization of histones
-
doi: 10.1021/pr900777e
-
Plazas-Mayorca, M. D., Zee, B. M., Young, N. L., Fingerman, I. M., LeRoy, G., Briggs, S. D., et al. (2009). One-pot shotgun quantitative mass spectrometry characterization of histones. J. Proteome Res. 8, 5367-5374. doi: 10.1021/pr900777e.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5367-5374
-
-
Plazas-Mayorca, M.D.1
Zee, B.M.2
Young, N.L.3
Fingerman, I.M.4
LeRoy, G.5
Briggs, S.D.6
-
76
-
-
77957970301
-
Epigenetic modifications and human disease
-
doi: 10.1038/nbt.1685
-
Portella, A., and Esteller, M. (2010). Epigenetic modifications and human disease. Nat. Biotechnol. 28, 1057-1068. doi: 10.1038/nbt.1685.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1057-1068
-
-
Portella, A.1
Esteller, M.2
-
77
-
-
36448949026
-
Multivalent engagement of chromatin modifications by linked binding modules
-
doi: 10.1038/nrm2298
-
Ruthenburg, A. J., Li, H., Patel, D. J., and Allis, D. (2007). Multivalent engagement of chromatin modifications by linked binding modules. Nat. Rev. Mol. Cell Biol. 8, 983-994. doi: 10.1038/nrm2298.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 983-994
-
-
Ruthenburg, A.J.1
Li, H.2
Patel, D.J.3
Allis, D.4
-
78
-
-
78650447665
-
β-N-acetylglucosamine (O-GlcNAc) is part of the histone code
-
doi: 10.1073/pnas.1009023107
-
Sakabe, K., Wang, Z., and Hart, G. W. (2010). β-N-acetylglucosamine (O-GlcNAc) is part of the histone code. Proc. Natl. Acad. Sci. U.S.A. 107, 19915-19920. doi: 10.1073/pnas.1009023107.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 19915-19920
-
-
Sakabe, K.1
Wang, Z.2
Hart, G.W.3
-
79
-
-
77956897642
-
The structure of (CENP-A-H4)2 reveals physical features that mark centromeres
-
doi: 10.1038/nature09323
-
Sekulic, N., Bassett, E. A., Rogers, D. J., and Black, B. E. (2010). The structure of (CENP-A-H4)2 reveals physical features that mark centromeres. Nature 467, 347-351. doi: 10.1038/nature09323.
-
(2010)
Nature
, vol.467
, pp. 347-351
-
-
Sekulic, N.1
Bassett, E.A.2
Rogers, D.J.3
Black, B.E.4
-
80
-
-
79953719035
-
Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes
-
doi: 10.1016/j.jmb.2011.01.003
-
Shimko, J. C., North, J. A., Bruns, A. N., Poirier, M. G., and Ottensen, J. J. (2011). Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes. J. Mol. Biol. 408, 187-204. doi: 10.1016/j.jmb.2011.01.003.
-
(2011)
J. Mol. Biol.
, vol.408
, pp. 187-204
-
-
Shimko, J.C.1
North, J.A.2
Bruns, A.N.3
Poirier, M.G.4
Ottensen, J.J.5
-
81
-
-
79961217626
-
Histone fold modifications control nucleosome unwrapping and disassembly
-
doi: 10.1073/pnas.1106264108
-
Simon, M., North, J. A., Shimko, J. C., Forties, R. A., Ferdinand, M. B., Manohar, M., et al. (2011). Histone fold modifications control nucleosome unwrapping and disassembly. Proc. Natl. Acad. Sci. U.S.A. 108, 12711-12716. doi: 10.1073/pnas.1106264108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12711-12716
-
-
Simon, M.1
North, J.A.2
Shimko, J.C.3
Forties, R.A.4
Ferdinand, M.B.5
Manohar, M.6
-
82
-
-
33847386172
-
The site-specific installation of methyl-lysine analogs into recombinant histones
-
doi: 10.1016/j.cell.2006.12.041
-
Simon, M. D., Chu, F., Racki, L. R., de la Cruz, C. C., Burlingame, A. L., Panning, B., et al. (2007). The site-specific installation of methyl-lysine analogs into recombinant histones. Cell 128, 1003-1012. doi: 10.1016/j.cell.2006.12.041.
-
(2007)
Cell
, vol.128
, pp. 1003-1012
-
-
Simon, M.D.1
Chu, F.2
Racki, L.R.3
de la Cruz, C.C.4
Burlingame, A.L.5
Panning, B.6
-
83
-
-
32344453537
-
Gene-specific characterization of human histone H2B by electron capture dissociation
-
doi: 10.1021/pr050268v
-
Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L., and Pesavento, J. J. (2006). Gene-specific characterization of human histone H2B by electron capture dissociation. J. Proteome Res. 5, 233-239. doi: 10.1021/pr050268v.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 233-239
-
-
Siuti, N.1
Roth, M.J.2
Mizzen, C.A.3
Kelleher, N.L.4
Pesavento, J.J.5
-
84
-
-
0037402422
-
Mass spectrometric quantification of acetylation at specific lysines within the amino-terminal tail of histone H4
-
doi: 10.1016/S0003-2697(03)00032-30
-
Smith, C. M., Gafken, P. R., Zhang, Z., Gottschling, D. E., Smith, J. B., and Smith, D. L. (2003). Mass spectrometric quantification of acetylation at specific lysines within the amino-terminal tail of histone H4. Anal. Biochem. 316, 23-33. doi: 10.1016/S0003-2697(03)00032-30.
-
(2003)
Anal. Biochem.
, vol.316
, pp. 23-33
-
-
Smith, C.M.1
Gafken, P.R.2
Zhang, Z.3
Gottschling, D.E.4
Smith, J.B.5
Smith, D.L.6
-
85
-
-
0037059077
-
Heritable chromatin structure: mapping "memory" in histones H3 and H4
-
doi: 10.1073/pnas.182424999
-
Smith, C. M., Haimberger, Z. W., Johnson, C. O., Wolf, A. J., Gafken, P. R., Zhang, Z., et al. (2002). Heritable chromatin structure: mapping "memory" in histones H3 and H4. Proc. Natl. Acad. Sci. U.S.A. 99(Suppl. 4), 16454-16461. doi: 10.1073/pnas.182424999.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, Issue.SUPPL. 4
, pp. 16454-16461
-
-
Smith, C.M.1
Haimberger, Z.W.2
Johnson, C.O.3
Wolf, A.J.4
Gafken, P.R.5
Zhang, Z.6
-
86
-
-
0035954274
-
Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1
-
doi: 10.1016/S0960-9822(01)00294-299
-
Strahl, B. D., Briggs, S. D., Brame, C. J., Caldwell, J. A., Koh, S. S., Ma, H., et al. (2001). Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1. Curr. Biol. 11, 996-1000. doi: 10.1016/S0960-9822(01)00294-299.
-
(2001)
Curr. Biol.
, vol.11
, pp. 996-1000
-
-
Strahl, B.D.1
Briggs, S.D.2
Brame, C.J.3
Caldwell, J.A.4
Koh, S.S.5
Ma, H.6
-
87
-
-
79955534838
-
Structure and histone binding properties of the Vps75-Rtt109 chaperone-lysine acetyltransferase complex
-
doi: 10.1074/jbc.C111.220715
-
Su, D., Hu, Q., Zhou, H., Thompson, J. R., Xu, R., Zhang, Z., et al. (2011). Structure and histone binding properties of the Vps75-Rtt109 chaperone-lysine acetyltransferase complex. J. Biol. Chem. 286, 15625-15629. doi: 10.1074/jbc.C111.220715.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 15625-15629
-
-
Su, D.1
Hu, Q.2
Zhou, H.3
Thompson, J.R.4
Xu, R.5
Zhang, Z.6
-
88
-
-
3042765151
-
Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications
-
doi: 10.1021/pr0499794
-
Syka, J. E., Mart, J. A., Bai, D. L., Horning, S., Senko, M. W., Schwartz, J. C., et al. (2004). Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. J. Proteome Res. 3, 621-626. doi: 10.1021/pr0499794.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 621-626
-
-
Syka, J.E.1
Mart, J.A.2
Bai, D.L.3
Horning, S.4
Senko, M.W.5
Schwartz, J.C.6
-
89
-
-
79957997791
-
Structures of human nucleosomes containing major histone H3 variants
-
doi: 10.1107/S0907444911014818
-
Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., et al. (2011a). Structures of human nucleosomes containing major histone H3 variants. Acta Crystallogr. Sect. D Biol. Crystallogr. 67, 578-583. doi: 10.1107/S0907444911014818.
-
(2011)
Acta Crystallogr. Sect. D Biol. Crystallogr.
, vol.67
, pp. 578-583
-
-
Tachiwana, H.1
Osakabe, A.2
Shiga, T.3
Miya, Y.4
Kimura, H.5
Kagawa, W.6
-
90
-
-
80051685994
-
Crystal structure of the human centromeric nucleosome containing CENP-A
-
doi: 10.1038/nature10258
-
Tachiwana, H., Kagawa, W., Shiga, T., Osakabe, A., Miya, Y., Saito, K., et al. (2011b). Crystal structure of the human centromeric nucleosome containing CENP-A. Nature 476, 232-235. doi: 10.1038/nature10258.
-
(2011)
Nature
, vol.476
, pp. 232-235
-
-
Tachiwana, H.1
Kagawa, W.2
Shiga, T.3
Osakabe, A.4
Miya, Y.5
Saito, K.6
-
91
-
-
77949874234
-
Histone variants-ancient wrap artists of the epigenome
-
doi: 10.1038/nrm2861
-
Talbert, P. B., and Henikoff, S. (2010). Histone variants-ancient wrap artists of the epigenome. Nat. Rev. Mol. Cell Biol. 11, 264-275. doi: 10.1038/nrm2861.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
92
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
doi: 10.1016/j.cell.2011.08.008
-
Tan, M., Luo, H., Lee, S., Jin, F., Yang, J. S., Montellier, E., et al. (2011). Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146, 1016-1028. doi: 10.1016/j.cell.2011.08.008.
-
(2011)
Cell
, vol.146
, pp. 1016-1028
-
-
Tan, M.1
Luo, H.2
Lee, S.3
Jin, F.4
Yang, J.S.5
Montellier, E.6
-
93
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
-
doi: 10.1038/nsmb1338
-
Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D., and Patel, D. J. (2007). How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat. Struct. Mol. Biol. 14, 1025-1040. doi: 10.1038/nsmb1338.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
94
-
-
32344453899
-
Mass spectrometric characterization of human histone H3: a bird's eye view
-
doi: 10.1021/pr050266a
-
Thomas, C. E., Kelleher, N. L., and Mizzen, N. L. (2006). Mass spectrometric characterization of human histone H3: a bird's eye view. J. Proteome Res. 5, 240-247. doi: 10.1021/pr050266a.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 240-247
-
-
Thomas, C.E.1
Kelleher, N.L.2
Mizzen, N.L.3
-
95
-
-
84866882318
-
Enhanced top-down characterization of histone post-translational modfications
-
doi: 10.1186/gb-2012-13-10-r86
-
Tian, Z., Toliæ, N., Zhao, R., Moore, R. J., Hengel, S. M., Robinson, E. W., et al. (2012). Enhanced top-down characterization of histone post-translational modfications. Genome Biol. 13, R86. doi: 10.1186/gb-2012-13-10-r86.
-
(2012)
Genome Biol.
, vol.13
-
-
Tian, Z.1
Toliæ, N.2
Zhao, R.3
Moore, R.J.4
Hengel, S.M.5
Robinson, E.W.6
-
96
-
-
36749094051
-
Analysis of proteins and peptides on a chromatographic timescale by electron-transfer dissociation MS
-
doi: 10.1111/j.1742-4658.2007.06148.x
-
Udeshi, N. D., Shabanowitz, J., Hunt, D. F., and Rose, K. L. (2007). Analysis of proteins and peptides on a chromatographic timescale by electron-transfer dissociation MS. FEBS J. 274, 6269-6276. doi: 10.1111/j.1742-4658.2007.06148.x.
-
(2007)
FEBS J.
, vol.274
, pp. 6269-6276
-
-
Udeshi, N.D.1
Shabanowitz, J.2
Hunt, D.F.3
Rose, K.L.4
-
97
-
-
0037077178
-
Dot1p modulates silencing in yeast by methylation of the nucleosome core
-
doi: 10.1016/S0092-8674(02)00759-756
-
van Leeuwen, F., Gafken, P. R., and Gottschling, D. E. (2002). Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell 109, 745-756. doi: 10.1016/S0092-8674(02)00759-756.
-
(2002)
Cell
, vol.109
, pp. 745-756
-
-
van Leeuwen, F.1
Gafken, P.R.2
Gottschling, D.E.3
-
98
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
doi: 10.1016/j.cell.2010.08.020
-
Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., et al. (2010). Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 142, 967-980. doi: 10.1016/j.cell.2010.08.020.
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
-
99
-
-
34848911602
-
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4
-
doi: 10.1016/j.cell.2007.08.016
-
Vermeulen, M., Mulder, K. W., Denissov, S., Pijnappel, W. W., van Schaik, F. M., Varier, R. A., et al. (2007). Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131, 58-69. doi: 10.1016/j.cell.2007.08.016.
-
(2007)
Cell
, vol.131
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.4
van Schaik, F.M.5
Varier, R.A.6
-
100
-
-
84867009687
-
Asymmetrically modified nucleosomes
-
doi: 10.1016/j.cell.2012.09.002
-
Voigt, P., LeRoy, G., Drury III, W. J., Zee, B. M., Son, J., Beck, D., et al. (2012). Asymmetrically modified nucleosomes. Cell 151, 181-193. doi: 10.1016/j.cell.2012.09.002.
-
(2012)
Cell
, vol.151
, pp. 181-193
-
-
Voigt, P.1
LeRoy, G.2
Drury III, W.J.3
Zee, B.M.4
Son, J.5
Beck, D.6
-
101
-
-
79956326021
-
Combinatorial readout of dual histone modifications by paired chromatin-associated modules
-
doi: 10.1074/jbc.R111.219139
-
Wang, Z., and Patel, D. J. (2011). Combinatorial readout of dual histone modifications by paired chromatin-associated modules. J. Biol. Chem. 286, 18363-18368. doi: 10.1074/jbc.R111.219139.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18363-18368
-
-
Wang, Z.1
Patel, D.J.2
-
102
-
-
84863522509
-
A facile method to synthesize histones with posttranslational modification mimics
-
doi: 10.1021/bi300535a
-
Wang, Z. U., Wang, Y. S., Pai, P. J., Russell, W. K., Russell, D. H., and Liu, W. R. (2012). A facile method to synthesize histones with posttranslational modification mimics. Biochemistry 51, 5232-5234. doi: 10.1021/bi300535a.
-
(2012)
Biochemistry
, vol.51
, pp. 5232-5234
-
-
Wang, Z.U.1
Wang, Y.S.2
Pai, P.J.3
Russell, W.K.4
Russell, D.H.5
Liu, W.R.6
-
103
-
-
77956385727
-
Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y
-
doi: 10.1083/jcb.201002043
-
Wiedemann, S. M., Mildner, S. N., Bönisch, C., Israel, L., Maiser, A., Matheisl, S., et al. (2010). Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y. J. Cell Biol. 190, 777-791. doi: 10.1083/jcb.201002043.
-
(2010)
J. Cell Biol.
, vol.190
, pp. 777-791
-
-
Wiedemann, S.M.1
Mildner, S.N.2
Bönisch, C.3
Israel, L.4
Maiser, A.5
Matheisl, S.6
-
104
-
-
55849104839
-
Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
-
doi: 10.1002/pmic.200800329
-
Wiesner, J., Premsler, T., and Sickmann, A. (2008). Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications. Proteomics 8, 4466-4483. doi: 10.1002/pmic.200800329.
-
(2008)
Proteomics
, vol.8
, pp. 4466-4483
-
-
Wiesner, J.1
Premsler, T.2
Sickmann, A.3
-
105
-
-
20444417108
-
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
-
doi: 10.1016/j.cell.2005.03.036
-
Wysocka, J., Swigut, T., Milne, T. A., Dou, Y., Zhang, X., Burlingame, A. L., et al. (2005). WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121, 859-872. doi: 10.1016/j.cell.2005.03.036.
-
(2005)
Cell
, vol.121
, pp. 859-872
-
-
Wysocka, J.1
Swigut, T.2
Milne, T.A.3
Dou, Y.4
Zhang, X.5
Burlingame, A.L.6
-
106
-
-
84861163510
-
Lysine succinylation and lysine malonylation in histones
-
doi: 10.1074/mcp.M111.015875
-
Xie, Z., Dai, J., Dai, L., Tan, M., Cheng, Z., Wu, Y., et al. (2012). Lysine succinylation and lysine malonylation in histones. Mol. Cell. Proteomics 11, 100-107. doi: 10.1074/mcp.M111.015875.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 100-107
-
-
Xie, Z.1
Dai, J.2
Dai, L.3
Tan, M.4
Cheng, Z.5
Wu, Y.6
-
107
-
-
78650233514
-
TDRD3 is an effector molecule for arginine-methylated histone marks
-
doi: 10.1016/j.molcel.2010.11.024
-
Yang, Y., Lu, Y., Espejo, A., Wu, J., Xu, W., Liang, S., et al. (2010). TDRD3 is an effector molecule for arginine-methylated histone marks. Cell 40, 1016-1023. doi: 10.1016/j.molcel.2010.11.024.
-
(2010)
Cell
, vol.40
, pp. 1016-1023
-
-
Yang, Y.1
Lu, Y.2
Espejo, A.3
Wu, J.4
Xu, W.5
Liang, S.6
-
108
-
-
71049122240
-
High throughput characterization of combinatorial histone codes
-
doi: 10.1074/mcp.M900238-MCP200
-
Young, N. L., DiMaggio, P. A., Plazas-Mayorca, M. D., Baliban, R. C., Floudas, C. A., and Garcia, B. A. (2009). High throughput characterization of combinatorial histone codes. Mol. Cell. Proteomics 8, 2266-2284. doi: 10.1074/mcp.M900238-MCP200.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2266-2284
-
-
Young, N.L.1
DiMaggio, P.A.2
Plazas-Mayorca, M.D.3
Baliban, R.C.4
Floudas, C.A.5
Garcia, B.A.6
-
109
-
-
79953143753
-
H3K26 methylation antagonizes PRC2-mediated H3K27 methylation
-
doi: 10.1016/j.molcel.2010.11.024
-
Yuan, W., Xu, M., Huang, C., Liu, N., Chen, S., and Zhu, B. (2011). H3K26 methylation antagonizes PRC2-mediated H3K27 methylation. J. Biol. Chem. 286, 7983-7989. doi: 10.1016/j.molcel.2010.11.024.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 7983-7989
-
-
Yuan, W.1
Xu, M.2
Huang, C.3
Liu, N.4
Chen, S.5
Zhu, B.6
-
110
-
-
77449086407
-
In vivo residue-specific histone methylation dynamics
-
doi: 10.1074/jbc.M109.063784
-
Zee, B. M., Levin, R. S., Xu, B., LeRoy, G., Wingreen, N. S., and Garcia, B. A. (2010). In vivo residue-specific histone methylation dynamics. J. Biol. Chem. 285, 3341-3350. doi: 10.1074/jbc.M109.063784.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3341-3350
-
-
Zee, B.M.1
Levin, R.S.2
Xu, B.3
LeRoy, G.4
Wingreen, N.S.5
Garcia, B.A.6
-
111
-
-
80455131094
-
Quantitative proteomic approaches to studying histone modifications
-
doi: 10.2174/1875397301005010106
-
Zee, B. M., Young, N. L., and Garcia, B. A. (2011). Quantitative proteomic approaches to studying histone modifications. Curr. Chem. Genomics 5, 106-114. doi: 10.2174/1875397301005010106.
-
(2011)
Curr. Chem. Genomics
, vol.5
, pp. 106-114
-
-
Zee, B.M.1
Young, N.L.2
Garcia, B.A.3
-
112
-
-
61849108746
-
Identification and verification of lysine propionylation and butyrylation in yeast core histones using PTMap software
-
doi: 10.1021/pr8005155
-
Zhang, K., Chen, Y., Zhang, Z., and Zhao, Y. (2009). Identification and verification of lysine propionylation and butyrylation in yeast core histones using PTMap software. J. Proteome Res. 8, 900-906. doi: 10.1021/pr8005155.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 900-906
-
-
Zhang, K.1
Chen, Y.2
Zhang, Z.3
Zhao, Y.4
-
113
-
-
80054818714
-
Modification of histones by sugar β-N-acetylglucosamine (GlcNAc) occurs on multiple residues, including histone H3 serine 10, and is cell cycle-regulated
-
doi: 10.1074/jbc.M111.284885
-
Zhang, S., Roche, K., Nasheuer, H., and Lowndes, F. (2011). Modification of histones by sugar β-N-acetylglucosamine (GlcNAc) occurs on multiple residues, including histone H3 serine 10, and is cell cycle-regulated. J. Biol. Chem. 286, 37483-37495. doi: 10.1074/jbc.M111.284885.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37483-37495
-
-
Zhang, S.1
Roche, K.2
Nasheuer, H.3
Lowndes, F.4
|