Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes

Journal of Biological Chemistry

Volumn 286, Issue 13, 2011, Pages 11099-11109

  Lee, Ju Yeon ^a   Wei, Sijie ^a   Lee, Tae Hee ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE ACETYLATION; LYSINE RESIDUES; N-TERMINALS; NUCLEOSOMES; STRUCTURAL MODELS;

AMINO ACIDS; MODEL STRUCTURES; NUCLEIC ACIDS; PROTEINS;

ACETYLATION;

CELL PROTEIN; DNA; HISTONE H2A; HISTONE H3; MAGNESIUM ION; PICCOLO NUA4 COMPLEX; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CELL STRUCTURE; CONTROLLED STUDY; DNA STRUCTURE; HISTONE ACETYLATION; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MOLECULAR MODEL; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN ANALYSIS;

ACETYLATION; ANIMALS; DNA; HISTONE ACETYLTRANSFERASES; HISTONES; HUMANS; MAGNESIUM; MULTIPROTEIN COMPLEXES; NUCLEOSOMES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; XENOPUS;

EID: 79953175642     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.192047     Document Type: Article

References (54)

1. Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
2. Robinson, P. J., Fairall, L., Huynh, V. A., and Rhodes, D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 6506-6511
3. Finch, J. T., and Klug, A. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 1897-1901
4. Cosgrove, M. S., Boeke, J. D., and Wolberger, C. (2004) Nat. Struct. Mol. Biol. 11, 1037-1043
5. Felsenfeld, G., and Groudine, M. (2003) Nature 421, 448-453
6. Fischle, W., Wang, Y., and Allis, C. D. (2003) Curr Opin Cell Biol. 15, 172-183
7. Luger, K., and Richmond, T. J. (1998) Curr. Opin. Genet. Dev. 8, 140-146
8. Arya, G., and Schlick, T. (2009) J. Phys. Chem. A 113, 4045-4059
9. Bertin, A., Renouard, M., Pedersen, J. S., Livolant, F., and Durand, D. (2007) Biophys. J. 92, 2633-2645
10. Dorigo, B., Schalch, T., Bystricky, K., and Richmond, T. J. (2003) J. Mol. Biol. 327, 85-96
11. Shahbazian, M. D., and Grunstein, M. (2007) Annu. Rev. Biochem. 76, 75-100
12. Hansen, J. C., Nyborg, J. K., Luger, K., and Stargell, L. A. (2010) J. Cell Physiol. 224, 289-299
13. Boudreault, A. A., Cronier, D., Selleck, W., Lacoste, N., Utley, R. T., Allard, S., Savard, J., Lane, W. S., Tan, S., and Côté, J. (2003) Genes Dev. 17, 1415-1428
14. Allfrey, V. G., Faulkner, R., and Mirsky, A. E. (1964) Proc. Natl. Acad. Sci. U.S.A. 51, 786-794
15. Pogo, B. G., Allfrey, V. G., and Mirsky, A. E. (1966) Proc. Natl. Acad. Sci. U.S.A. 55, 805-812
16. Hebbes, T. R., Thorne, A. W., and Crane-Robinson, C. (1988) EMBO J. 7, 1395-1402
17. Berndsen, C. E., Selleck, W., McBryant, S. J., Hansen, J. C., Tan, S., and Denu, J. M. (2007) Biochemistry 46, 2091-2099
18. Selleck, W., Fortin, I., Sermwittayawong, D., Côté, J., and Tan, S. (2005) Mol. Cell Biol. 25, 5535-5542
19. Kan, P. Y., Caterino, T. L., and Hayes, J. J. (2009) Mol. Cell Biol. 29, 538-546
20. Megee, P. C., Morgan, B. A., and Smith, M. M. (1995) Genes Dev. 9, 1716-1727
21. Sobel, R. E., Cook, R. G., Perry, C. A., Annunziato, A. T., and Allis, C. D. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 1237-1241
22. Suka, N., Luo, K., and Grunstein, M. (2002) Nat. Genet. 32, 378-383
23. Durrin, L. K., Mann, R. K., Kayne, P. S., and Grunstein, M. (1991) Cell 65, 1023-1031
24. Robinson, P. J., An, W., Routh, A., Martino, F., Chapman, L., Roeder, R. G., and Rhodes, D. (2008) J. Mol. Biol. 381, 816-825
25. Choi, J. K., and Howe, L. J. (2009) Biochem. Cell Biol. 87, 139-150
26. Cosgrove, M. S., and Wolberger, C. (2005) Biochem. Cell Biol. 83, 468-476
27. Hansen, J. C. (2002) Annu. Rev. Biophys. Biomol. Struct. 31, 361-392
28. Anderson, J. D., Lowary, P. T., and Widom, J. (2001) J. Mol. Biol. 307, 977-985
29. Sinha, D., and Shogren-Knaak, M. A. (2010) J. Biol. Chem. 285, 16572-16581
30. Staynov, D. Z. (2008) Bioessays 30, 1003-1009
31. Tremethick, D. J. (2007) Cell 128, 651-654
32. Zheng, C., and Hayes, J. J. (2003) J. Biol. Chem. 278, 24217-24224
33. Tóth, K. F., Mazurkiewicz, J., and Rippe, K. (2005) J. Biol. Chem. 280, 15690-15699
34. Tan, S., Kern, R. C., and Selleck, W. (2005) Protein Expression Purif. 40, 385-395
35. Berndsen, C. E., and Denu, J. M. (2005) Methods 36, 321-331
36. Choy, J. S., Wei, S., Lee, J. Y., Tan, S., Chu, S., and Lee, T. H. (2010) J. Am. Chem. Soc. 132, 1782-1783
37. Norton, V. G., Imai, B. S., Yau, P., and Bradbury, E. M. (1989) Cell 57, 449-457
38. Norton, V. G., Marvin, K. W., Yau, P., and Bradbury, E. M. (1990) J. Biol. Chem. 265, 19848-19852
39. Gansen, A., Tóth, K., Schwarz, N., and Langowski, J. (2009) J. Phys. Chem. B 113, 2604-2613
40. Bauer, W. R., Hayes, J. J., White, J. H., and Wolffe, A. P. (1994) J. Mol. Biol. 236, 685-690
41. Ausio, J., and van Holde, K. E. (1986) Biochemistry 25, 1421-1428
42. Kimura, H., and Cook, P. R. (2001) J. Cell Biol. 153, 1341-1353
43. Bruno, M., Flaus, A., Stockdale, C., Rencurel, C., Ferreira, H., and Owen-Hughes, T. (2003) Mol. Cell 12, 1599-1606
44. Park, Y. J., Chodaparambil, J. V., Bao, Y., McBryant, S. J., and Luger, K. (2005) J. Biol. Chem. 280, 1817-1825
45. Gansen, A., Valeri, A., Hauger, F., Felekyan, S., Kalinin, S., Tóth, K., Langowski, J., and Seidel, C. A. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 15308-15313
46. Claudet, C., Angelov, D., Bouvet, P., Dimitrov, S., and Bednar, J. (2005) J. Biol. Chem. 280, 19958-19965
47. Poirier, M. G., Oh, E., Tims, H. S., and Widom, J. (2009) Nat. Struct. Mol. Biol. 16, 938-944
48. Schalch, T., Duda, S., Sargent, D. F., and Richmond, T. J. (2005) Nature 436, 138-141
49. Gordon, F., Luger, K., and Hansen, J. C. (2005) J. Biol. Chem. 280, 33701-33706
50. Fletcher, T. M., and Hansen, J. C. (1995) J. Biol. Chem. 270, 25359-25362
51. Dorigo, B., Schalch, T., Kulangara, A., Duda, S., Schroeder, R. R., and Richmond, T. J. (2004) Science 306, 1571-1573
52. Zhou, J., Fan, J. Y., Rangasamy, D., and Tremethick, D. J. (2007) Nat. Struct. Mol. Biol. 14, 1070-1076
53. Banères, J. L., Martin, A., and Parello, J. (1997) J. Mol. Biol. 273, 503-508
54. Wang, X., Moore, S. C., Laszckzak, M., and Ausió, J. (2000) J. Biol. Chem. 275, 35013-35020