-
1
-
-
0035404556
-
Organization and regulation of meta cleavage pathway genes for toluene and o-xylene derivative degradation in Pseudomonas stutzeri OX1
-
Arenghi FL, Berlanda D, Galli E, Sello G, Barbieri P (2001) Organization and regulation of meta cleavage pathway genes for toluene and o-xylene derivative degradation in Pseudomonas stutzeri OX1. Appl Environ Microbiol 67:3304-3308
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3304-3308
-
-
Arenghi, F.L.1
Berlanda, D.2
Galli, E.3
Sello, G.4
Barbieri, P.5
-
3
-
-
37549050177
-
The molecular basis for inhibition of BphD, a C-C bond hydrolase involved in polychlorinated biphenyls degradation: Large 3-substituents prevent tautomerization
-
Bhowmik S, Horsman GP, Bolin JT, Eltis LD (2007) The molecular basis for inhibition of BphD, a C-C bond hydrolase involved in polychlorinated biphenyls degradation: large 3-substituents prevent tautomerization. J Biol Chem 282:36377-36385
-
(2007)
J Biol Chem
, vol.282
, pp. 36377-36385
-
-
Bhowmik, S.1
Horsman, G.P.2
Bolin, J.T.3
Eltis, L.D.4
-
4
-
-
77957826140
-
The influence of key residues in the tunnel entrance and the active site on activity and selectivity of toluene 4-monooxygenase
-
Brouk M, Derry NL, Shainsky J, Ben-Barak Zelas Z, Boyko Y, Dabush K, Fishman A (2010) The influence of key residues in the tunnel entrance and the active site on activity and selectivity of toluene 4-monooxygenase. J Mol Catal B: Enzymatic 66:72-80
-
(2010)
J Mol Catal B: Enzymatic
, vol.66
, pp. 72-80
-
-
Brouk, M.1
Derry, N.L.2
Shainsky, J.3
Zelas, Z.B.-B.4
Boyko, Y.5
Dabush, K.6
Fishman, A.7
-
5
-
-
84868156224
-
CAVER 3.0: A tool for analysis of transport pathways in dynamic protein structures
-
Chovancová E, Pavelka A, Benes P, Strnad O, Brezovsky J, Kozlikova B, Gora A, Sustr V, Klvana M, Medek P, Biedermannova L, Sochor J, Damborsky J (2012) CAVER 3.0: A tool for analysis of transport pathways in dynamic protein structures. PLoS Comput Biol 8:e1002708
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Chovancová, E.1
Pavelka, A.2
Benes, P.3
Strnad, O.4
Brezovsky, J.5
Kozlikova, B.6
Gora, A.7
Sustr, V.8
Klvana, M.9
Medek, P.10
Biedermannova, L.11
Sochor, J.12
Damborsky, J.13
-
6
-
-
0346101759
-
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel
-
Chaloupková R, Sýkorová J, Prokop Z, Jesenská A, Monincová M, Pavlová M, Tsuda M, Nagata Y, Damborský J (2003) Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel. J Biol Chem 278:52622-52628
-
(2003)
J Biol Chem
, vol.278
, pp. 52622-52628
-
-
Chaloupková, R.1
Sýkorová, J.2
Prokop, Z.3
Jesenská, A.4
Monincová, M.5
Pavlová, M.6
Tsuda, M.7
Nagata, Y.8
Damborský, J.9
-
7
-
-
16544381551
-
Bacterial degradation of aromatic pollutants: A paradigm of metabolic versatility
-
Diaz E (2004) Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility. Int Microbiol 7:173-180
-
(2004)
Int Microbiol
, vol.7
, pp. 173-180
-
-
Diaz, E.1
-
8
-
-
0027023208
-
Structural and evolutionary relationships in lipase mechanism and activation
-
Dodson GG, Lawson DM, Winkler FK (1992) Structural and evolutionary relationships in lipase mechanism and activation. Faraday Discuss 93:95-105
-
(1992)
Faraday Discuss
, vol.93
, pp. 95-105
-
-
Dodson, G.G.1
Lawson, D.M.2
Winkler, F.K.3
-
9
-
-
0036708001
-
Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
-
Fushinobu S, Saku T, Hidaka M, Jun. SY, Nojiri H, Yamane H, Shoun H, Omori T, Wakaqi T (2002) Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products. Protein Sci 11:2184-2195
-
(2002)
Protein Sci
, vol.11
, pp. 2184-2195
-
-
Fushinobu, S.1
Saku, T.2
Hidaka, M.3
Jun, S.Y.4
Nojiri, H.5
Yamane, H.6
Shoun, H.7
Omori, T.8
Wakaqi, T.9
-
10
-
-
0033807114
-
Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin
-
Hernáez MJ, Andújar E, Ríos JL, Kaschabek SR, Reineke W, Santero E (2000) Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin. J Bacteriol 182:5448-5453
-
(2000)
J Bacteriol
, vol.182
, pp. 5448-5453
-
-
Hernáez, M.J.1
Andújar, E.2
Ríos, J.L.3
Kaschabek, S.R.4
Reineke, W.5
Santero, E.6
-
11
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B, Kutzner C, van der Spoel D, Lindahl E (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comput 4:435-447
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
12
-
-
34547094599
-
The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad
-
Horsman GP, Bhowmik S, Seah S Y K, Kumar P, Bolin JT, Eltis LD (2007) The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad. J Biol Chem 282:19894-19904
-
(2007)
J Biol Chem
, vol.282
, pp. 19894-19904
-
-
Horsman, G.P.1
Bhowmik, S.2
Seah, S.Y.K.3
Kumar, P.4
Bolin, J.T.5
Eltis, L.D.6
-
13
-
-
33748762789
-
Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway
-
Horsman GP, Ke J, Dai S, Seah SY, Bolin JT, Eltis LD (2006) Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway. Biochemistry 45:11071-11086
-
(2006)
Biochemistry
, vol.45
, pp. 11071-11086
-
-
Horsman, G.P.1
Ke, J.2
Dai, S.3
Seah, S.Y.4
Bolin, J.T.5
Eltis, L.D.6
-
15
-
-
33746033393
-
Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01
-
Jun. SY, Fushinobu S, Nojiri H, Omori T, Shoun H, Wakaqi T (2006) Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01. Biochim Biophys Acta 1764:1159-1166
-
(2006)
Biochim Biophys Acta
, vol.1764
, pp. 1159-1166
-
-
Jun, S.Y.1
Fushinobu, S.2
Nojiri, H.3
Omori, T.4
Shoun, H.5
Wakaqi, T.6
-
16
-
-
38949213307
-
Biodegradation of aromatic compound: An overview of meta-fission product hydrolases
-
Khajamohiddin S, Repalle ER, Pinjari AB, Merrick M, Siddavattam D (2008) Biodegradation of aromatic compound: an overview of meta-fission product hydrolases. Crit Rev Microbiol 34:13-31
-
(2008)
Crit Rev Microbiol
, vol.34
, pp. 13-31
-
-
Khajamohiddin, S.1
Repalle, E.R.2
Pinjari, A.B.3
Merrick, M.4
Siddavattam, D.5
-
17
-
-
0028241452
-
Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp strain KKS102
-
Kikuchi Y, Yasukochi Y, Nagata Y, Fukuda M, Takaqi M (1994) Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J Bacteriol 176:4269-4276
-
(1994)
J Bacteriol
, vol.176
, pp. 4269-4276
-
-
Kikuchi, Y.1
Yasukochi, Y.2
Nagata, Y.3
Fukuda, M.4
Takaqi, M.5
-
18
-
-
84867295646
-
Role of the NC-loop in catalytic activity and stability in lipase from Fervidobacterium changbaicum
-
Li BC, Yang GY, Wu L, Feng Y (2012) Role of the NC-loop in catalytic activity and stability in lipase from Fervidobacterium changbaicum. PLoS One 7:e46881-e46890
-
(2012)
PLoS One
, vol.7
-
-
Li, B.C.1
Yang, G.Y.2
Wu, L.3
Feng, Y.4
-
19
-
-
33750066944
-
Catalytic role for arginine 188 in the C-C hydrolase catalytic mechanism for Escherichia coli MhpC and Burkholderia xenovorans LB400 BphD
-
Li C, Li JJ, Montgomery MG, Wood SP, Bugg TD (2006) Catalytic role for arginine 188 in the C-C hydrolase catalytic mechanism for Escherichia coli MhpC and Burkholderia xenovorans LB400 BphD. Biochemistry 45:12470-12479
-
(2006)
Biochemistry
, vol.45
, pp. 12470-12479
-
-
Li, C.1
Li, J.J.2
Montgomery, M.G.3
Wood, S.P.4
Bugg, T.D.5
-
20
-
-
38149122142
-
Catalytic promiscuity in the alpha/beta-hydrolase superfamily: Hydroxamic acid formation, C-C bond formation, ester and thioester hydrolysis in the C-C hydrolase family
-
Li C, Hassler M, Bugg TD (2008) Catalytic promiscuity in the alpha/beta-hydrolase superfamily: hydroxamic acid formation, C-C bond formation, ester and thioester hydrolysis in the C-C hydrolase family. ChemBioChem 9:71-76
-
(2008)
ChemBioChem
, vol.9
, pp. 71-76
-
-
Li, C.1
Hassler, M.2
Bugg, T.D.3
-
21
-
-
12344275671
-
Catalytic mechanism of C-C hydrolase MhpC from Escherichia coli: Kinetic analysis of His263 and Ser110 sitedirected mutants
-
Li C, Montgomery MG, Mohammed F, Li JJ, Wood SP, Bugg TD (2005) Catalytic mechanism of C-C hydrolase MhpC from Escherichia coli: kinetic analysis of His263 and Ser110 sitedirected mutants. J Mol Biol 346:241-251
-
(2005)
J Mol Biol
, vol.346
, pp. 241-251
-
-
Li, C.1
Montgomery, M.G.2
Mohammed, F.3
Li, J.J.4
Wood, S.P.5
Bugg, T.D.6
-
22
-
-
33846527200
-
Investigation of a general base mechanism for ester hydrolysis in C-C hydrolase enzymes of the alpha/betahydrolase superfamily: A novel mechanism for the serine catalytic triad
-
Li JJ, Bugg TD (2007) Investigation of a general base mechanism for ester hydrolysis in C-C hydrolase enzymes of the alpha/betahydrolase superfamily: a novel mechanism for the serine catalytic triad. Org Biomol Chem 5:507-513
-
(2007)
Org Biomol Chem
, vol.5
, pp. 507-513
-
-
Li, J.J.1
Bugg, T.D.2
-
23
-
-
84961981789
-
An automated force field topology builder (ATB) and repository: Version 1.0.0
-
Malde AK, Zuo L, Breeze M, Stroet M, Poger D, Nair PC, Oostenbrink C, Mark AE (2011) An automated force field topology builder (ATB) and repository: version 1.0.0. J Chem Theory Comput 7:4026-4037
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 4026-4037
-
-
Malde, A.K.1
Zuo, L.2
Breeze, M.3
Stroet, M.4
Poger, D.5
Nair, P.C.6
Oostenbrink, C.7
Mark, A.E.8
-
24
-
-
0012484786
-
Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10
-
Nojiri H, Taira H, Iwata K, Morii K, Nam JW, Yoshida T, Habe H, Nakamura S, Shimizu K, Yamane H, Omori T (2003) Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10. Biosci Biotechnol Biochem 67:36-45
-
(2003)
Biosci Biotechnol Biochem
, vol.67
, pp. 36-45
-
-
Nojiri, H.1
Taira, H.2
Iwata, K.3
Morii, K.4
Nam, J.W.5
Yoshida, T.6
Habe, H.7
Nakamura, S.8
Shimizu, K.9
Yamane, H.10
Omori, T.11
-
25
-
-
67849130559
-
HotSpot Wizard: A web server for identification of hot spots in protein engineering
-
Pavelka A, Chovancova E, Damborsky J (2009) HotSpot Wizard: a web server for identification of hot spots in protein engineering. Nucleic Acids Res 37:W376-W383
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pavelka, A.1
Chovancova, E.2
Damborsky, J.3
-
26
-
-
70349330482
-
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
-
Pavlova M, Klvana M, Prokop Z, Chaloupkova R, Banas P, Otyepka M, Wade RC, Tsuda M, Nagata Y, Damborsky J (2009) Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate. Nat Chem Biol 5:727-733
-
(2009)
Nat Chem Biol
, vol.5
, pp. 727-733
-
-
Pavlova, M.1
Klvana, M.2
Prokop, Z.3
Chaloupkova, R.4
Banas, P.5
Otyepka, M.6
Wade, R.C.7
Tsuda, M.8
Nagata, Y.9
Damborsky, J.10
-
27
-
-
79251598947
-
Nitroreductase activity of ferredoxin reductase BphA4 from Dyella ginsengisoli LA-4 by catalytic and structural properties analysis
-
Qu YY, Zhou H, Li A, Ma F, Zhou JT (2011) Nitroreductase activity of ferredoxin reductase BphA4 from Dyella ginsengisoli LA-4 by catalytic and structural properties analysis. Appl Microbiol Biotechol 89:655-663
-
(2011)
Appl Microbiol Biotechol
, vol.89
, pp. 655-663
-
-
Qu, Y.Y.1
Zhou, H.2
Li, A.3
Ma, F.4
Zhou, J.T.5
-
28
-
-
84858244926
-
Identification of an acyl-enzyme intermediate in a metacleavage product hydrolase reveals the versatility of the catalytic triad
-
Ruzzini AC, Ghosh S, Horsman GP, Foster LJ, Bolin JT, Eltis LD (2012a) Identification of an acyl-enzyme intermediate in a metacleavage product hydrolase reveals the versatility of the catalytic triad. J Am Chem Soc 134:4615-4624
-
(2012)
J Am Chem Soc
, vol.134
, pp. 4615-4624
-
-
Ruzzini, A.C.1
Ghosh, S.2
Horsman, G.P.3
Foster, L.J.4
Bolin, J.T.5
Eltis, L.D.6
-
29
-
-
84864268097
-
The catalytic serine of meta-cleavage product hydrolases is activated differently for C-O bond cleavage than for C-C bond cleavage
-
Ruzzini AC, Horsman GP, Eltis LD (2012b) The catalytic serine of meta-cleavage product hydrolases is activated differently for C-O bond cleavage than for C-C bond cleavage. Biochemistry 51:5831-5840
-
(2012)
Biochemistry
, vol.51
, pp. 5831-5840
-
-
Ruzzini, A.C.1
Horsman, G.P.2
Eltis, L.D.3
-
30
-
-
34249790861
-
Characterization of a C-C bond hydrolase from Sphingomonas wittichii RW1 with novel specificities towards polychlorinated biphenyl metabolites
-
Seah S Y K, Ke JY, Denis G, Horsman GP, Fortin PD, Whiting CJ, Eltis LD (2007) Characterization of a C-C bond hydrolase from Sphingomonas wittichii RW1 with novel specificities towards polychlorinated biphenyl metabolites. J Bacteriol 189:4038-4045
-
(2007)
J Bacteriol
, vol.189
, pp. 4038-4045
-
-
Seah, S.Y.K.1
Ke, J.Y.2
Denis, G.3
Horsman, G.P.4
Fortin, P.D.5
Whiting, C.J.6
Eltis, L.D.7
-
31
-
-
0032483324
-
Purification and preliminary characterization of a serine hydrolase involved in the microbial degradation of polychlorinated biphenyls
-
Seah S Y K, Terracina G, Bolin JT, Riebel P, Snieckus V, Eltis LD (1998) Purification and preliminary characterization of a serine hydrolase involved in the microbial degradation of polychlorinated biphenyls. J Biol Chem 273:22943-22949
-
(1998)
J Biol Chem
, vol.273
, pp. 22943-22949
-
-
Seah, S.Y.K.1
Terracina, G.2
Bolin, J.T.3
Riebel, P.4
Snieckus, V.5
Eltis, L.D.6
-
32
-
-
84857922306
-
Investigation by site-directed mutagenesis of the role of cytochrome P450 2B4 non-active-site residues in protein-ligand interactions based on crystal structures of the ligand-bound enzyme
-
Wilderman PR, Gay SC, Jang HH, Zhang Q, Stout CD, Halpert JR (2012) Investigation by site-directed mutagenesis of the role of cytochrome P450 2B4 non-active-site residues in protein-ligand interactions based on crystal structures of the ligand-bound enzyme. FEBS J 279:1607-1620
-
(2012)
FEBS J
, vol.279
, pp. 1607-1620
-
-
Wilderman, P.R.1
Gay, S.C.2
Jang, H.H.3
Zhang, Q.4
Stout, C.D.5
Halpert, J.R.6
-
33
-
-
84862788890
-
Promiscuous esterase activities of the C-C hydrolases from Dyella ginsengisoli
-
Zhou H, Qu YY, Kong CL, Wu YG, Zhu K, Yang J, Zhou JT (2012a) Promiscuous esterase activities of the C-C hydrolases from Dyella ginsengisoli. Biotechnol Lett 34:1107-1113
-
(2012)
Biotechnol Lett
, vol.34
, pp. 1107-1113
-
-
Zhou, H.1
Qu, Y.Y.2
Kong, C.L.3
Wu, Y.G.4
Zhu, K.5
Yang, J.6
Zhou, J.T.7
-
34
-
-
84878680310
-
Tuning the substrate selectivity of meta-cleavage product hydrolase by domain swapping
-
doi:10.1007/s00253-012-4405-5
-
Zhou H, Qu YY, Shen E, Kong CL, Zhang XW, Ma Q, Zhou JT (2012b) Tuning the substrate selectivity of meta-cleavage product hydrolase by domain swapping. Appl Microbiol Biotechol. doi:10.1007/s00253-012-4405-5
-
(2012)
Appl Microbiol Biotechol
-
-
Zhou, H.1
Qu, Y.Y.2
Shen, E.3
Kong, C.L.4
Zhang, X.W.5
Ma, Q.6
Zhou, J.T.7
|