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Volumn 184, Issue 2, 2014, Pages 409-417

Identification of novel long noncoding rnas associated with TGF-β/Smad3-mediated renal inflammation and fibrosis by RNA sequencing

Author keywords

[No Author keywords available]

Indexed keywords

GLOMERULUS BASEMENT MEMBRANE ANTIBODY; LONG UNTRANSLATED RNA; SMAD3 PROTEIN; TRANSFORMING GROWTH FACTOR BETA;

EID: 84892148944     PISSN: 00029440     EISSN: 15252191     Source Type: Journal    
DOI: 10.1016/j.ajpath.2013.10.007     Document Type: Article
Times cited : (140)

References (44)
  • 1
    • 25444441069 scopus 로고    scopus 로고
    • Progression in chronic kidney disease
    • A.A. Eddy Progression in chronic kidney disease Adv Chronic Kidney Dis 12 2005 353 365
    • (2005) Adv Chronic Kidney Dis , vol.12 , pp. 353-365
    • Eddy, A.A.1
  • 3
    • 84864148484 scopus 로고    scopus 로고
    • TGF-beta/Smad signaling in kidney disease
    • H.Y. Lan, and A.C. Chung TGF-beta/Smad signaling in kidney disease Semin Nephrol 32 2012 236 243
    • (2012) Semin Nephrol , vol.32 , pp. 236-243
    • Lan, H.Y.1    Chung, A.C.2
  • 4
    • 77955489258 scopus 로고    scopus 로고
    • Essential role for Smad3 in angiotensin II-induced tubular epithelial-mesenchymal transition
    • F. Yang, X.R. Huang, A.C. Chung, C.C. Hou, K.N. Lai, and H.Y. Lan Essential role for Smad3 in angiotensin II-induced tubular epithelial- mesenchymal transition J Pathol 221 2010 390 401
    • (2010) J Pathol , vol.221 , pp. 390-401
    • Yang, F.1    Huang, X.R.2    Chung, A.C.3    Hou, C.C.4    Lai, K.N.5    Lan, H.Y.6
  • 5
    • 77949395650 scopus 로고    scopus 로고
    • Advanced glycation end-products induce tubular CTGF via TGF-beta-independent Smad3 signaling
    • A.C. Chung, H. Zhang, Y.Z. Kong, J.J. Tan, X.R. Huang, J.B. Kopp, and H.Y. Lan Advanced glycation end-products induce tubular CTGF via TGF-beta-independent Smad3 signaling J Am Soc Nephrol 21 2010 249 260
    • (2010) J Am Soc Nephrol , vol.21 , pp. 249-260
    • Chung, A.C.1    Zhang, H.2    Kong, Y.Z.3    Tan, J.J.4    Huang, X.R.5    Kopp, J.B.6    Lan, H.Y.7
  • 7
    • 79955593914 scopus 로고    scopus 로고
    • MicroRNAs as mediators and therapeutic targets in chronic kidney disease
    • J.M. Lorenzen, H. Haller, and T. Thum MicroRNAs as mediators and therapeutic targets in chronic kidney disease Nat Rev Nephrol 7 2011 286 294
    • (2011) Nat Rev Nephrol , vol.7 , pp. 286-294
    • Lorenzen, J.M.1    Haller, H.2    Thum, T.3
  • 8
    • 84864139464 scopus 로고    scopus 로고
    • MicroRNA circuits in transforming growth factor-beta actions and diabetic nephropathy
    • M. Kato, and R. Natarajan MicroRNA circuits in transforming growth factor-beta actions and diabetic nephropathy Semin Nephrol 32 2012 253 260
    • (2012) Semin Nephrol , vol.32 , pp. 253-260
    • Kato, M.1    Natarajan, R.2
  • 9
    • 84879381335 scopus 로고    scopus 로고
    • The regulation and function of microRNAs in kidney diseases
    • Q. Wei, Q.S. Mi, and Z. Dong The regulation and function of microRNAs in kidney diseases IUBMB Life 65 2013 602 614
    • (2013) IUBMB Life , vol.65 , pp. 602-614
    • Wei, Q.1    Mi, Q.S.2    Dong, Z.3
  • 11
    • 84925939424 scopus 로고    scopus 로고
    • Transforming growth factor-beta and Smads
    • H.Y. Lan, and A.C. Chung Transforming growth factor-beta and Smads Contrib Nephrol 170 2011 75 82
    • (2011) Contrib Nephrol , vol.170 , pp. 75-82
    • Lan, H.Y.1    Chung, A.C.2
  • 12
    • 84872104961 scopus 로고    scopus 로고
    • Role of the TGF-beta/BMP-7/Smad pathways in renal diseases
    • X.M. Meng, A.C. Chung, and H.Y. Lan Role of the TGF-beta/BMP-7/Smad pathways in renal diseases Clin Sci 124 2013 243 254
    • (2013) Clin Sci , vol.124 , pp. 243-254
    • Meng, X.M.1    Chung, A.C.2    Lan, H.Y.3
  • 16
    • 77955611511 scopus 로고    scopus 로고
    • MiR-192 mediates TGF-β/Smad3-driven renal fibrosis
    • A.C.K. Chung, X.R. Huang, X. Meng, and H.Y. Lan miR-192 mediates TGF-β/Smad3-driven renal fibrosis J Am Soc Nephrol 21 2010 1317 1325
    • (2010) J Am Soc Nephrol , vol.21 , pp. 1317-1325
    • Chung, A.C.K.1    Huang, X.R.2    Meng, X.3    Lan, H.Y.4
  • 17
    • 0026251250 scopus 로고
    • XIST and the mapping of the X chromosome inactivation centre
    • S.D. Brown XIST and the mapping of the X chromosome inactivation centre Bioessays 13 1991 607 612
    • (1991) Bioessays , vol.13 , pp. 607-612
    • Brown, S.D.1
  • 18
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • M. Guttman, and J.L. Rinn Modular regulatory principles of large non-coding RNAs Nature 482 2012 339 346
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 19
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Z. Wang, M. Gerstein, and M. Snyder RNA-Seq: a revolutionary tool for transcriptomics Nat Rev Genet 10 2009 57 63
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 20
    • 75649135574 scopus 로고    scopus 로고
    • RNA-seq: From technology to biology
    • S. Marguerat, and J. Bahler RNA-seq: from technology to biology Cell Mol Life Sci 67 2010 569 579
    • (2010) Cell Mol Life Sci , vol.67 , pp. 569-579
    • Marguerat, S.1    Bahler, J.2
  • 21
    • 49949092931 scopus 로고    scopus 로고
    • Mice overexpressing latent TGF-beta1 are protected against renal fibrosis in obstructive kidney disease
    • X.R. Huang, A.C. Chung, X.J. Wang, K.N. Lai, and H.Y. Lan Mice overexpressing latent TGF-beta1 are protected against renal fibrosis in obstructive kidney disease Am J Physiol Renal Physiol 295 2008 F118 F127
    • (2008) Am J Physiol Renal Physiol , vol.295
    • Huang, X.R.1    Chung, A.C.2    Wang, X.J.3    Lai, K.N.4    Lan, H.Y.5
  • 22
    • 39049125285 scopus 로고    scopus 로고
    • Latent TGF-beta1 protects against crescentic glomerulonephritis
    • X.R. Huang, A.C. Chung, L. Zhou, X.J. Wang, and H.Y. Lan Latent TGF-beta1 protects against crescentic glomerulonephritis J Am Soc Nephrol 19 2008 233 242
    • (2008) J Am Soc Nephrol , vol.19 , pp. 233-242
    • Huang, X.R.1    Chung, A.C.2    Zhou, L.3    Wang, X.J.4    Lan, H.Y.5
  • 23
    • 84873406358 scopus 로고    scopus 로고
    • Smad7 suppresses renal fibrosis via altering expression of TGF-beta/Smad3-regulated microRNAs
    • A.C. Chung, Y. Dong, W. Yang, X. Zhong, R. Li, and H.Y. Lan Smad7 suppresses renal fibrosis via altering expression of TGF-beta/Smad3-regulated microRNAs Mol Ther 21 2013 388 398
    • (2013) Mol Ther , vol.21 , pp. 388-398
    • Chung, A.C.1    Dong, Y.2    Yang, W.3    Zhong, X.4    Li, R.5    Lan, H.Y.6
  • 25
    • 65249099522 scopus 로고    scopus 로고
    • Disruption of the Smad7 gene promotes renal fibrosis and inflammation in unilateral ureteral obstruction (UUO) in mice
    • A.C. Chung, X.R. Huang, L. Zhou, R. Heuchel, K.N. Lai, and H.Y. Lan Disruption of the Smad7 gene promotes renal fibrosis and inflammation in unilateral ureteral obstruction (UUO) in mice Nephrol Dial Transplant 24 2009 1443 1454
    • (2009) Nephrol Dial Transplant , vol.24 , pp. 1443-1454
    • Chung, A.C.1    Huang, X.R.2    Zhou, L.3    Heuchel, R.4    Lai, K.N.5    Lan, H.Y.6
  • 26
    • 34547582418 scopus 로고    scopus 로고
    • CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
    • L. Kong, Y. Zhang, Z.Q. Ye, X.Q. Liu, S.Q. Zhao, L. Wei, and G. Gao CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine Nucleic Acids Res 35 2007 W345 W349
    • (2007) Nucleic Acids Res , vol.35
    • Kong, L.1    Zhang, Y.2    Ye, Z.Q.3    Liu, X.Q.4    Zhao, S.Q.5    Wei, L.6    Gao, G.7
  • 28
    • 3242878193 scopus 로고    scopus 로고
    • ECR Browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
    • I. Ovcharenko, M.A. Nobrega, G.G. Loots, and L. Stubbs ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes Nucleic Acids Res 32 2004 W280 W286
    • (2004) Nucleic Acids Res , vol.32
    • Ovcharenko, I.1    Nobrega, M.A.2    Loots, G.G.3    Stubbs, L.4
  • 29
    • 84888638018 scopus 로고    scopus 로고
    • The microRNA miR-433 promotes renal fibrosis by amplifying the TGF-β/Smad3-Azin1 pathway
    • R. Li, A.C. Chung, Y. Dong, W. Yang, X. Zhong, and H.Y. Lan The microRNA miR-433 promotes renal fibrosis by amplifying the TGF-β/Smad3-Azin1 pathway Kidney Int 84 2013 1129 1144
    • (2013) Kidney Int , vol.84 , pp. 1129-1144
    • Li, R.1    Chung, A.C.2    Dong, Y.3    Yang, W.4    Zhong, X.5    Lan, H.Y.6
  • 30
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • C. Trapnell, L. Pachter, and S.L. Salzberg TopHat: discovering splice junctions with RNA-Seq Bioinformatics 25 2009 1105 1111
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 33
    • 33746785696 scopus 로고    scopus 로고
    • Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
    • Y. Zhang, X.S. Liu, Q.R. Liu, and L. Wei Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species Nucleic Acids Res 34 2006 3465 3475
    • (2006) Nucleic Acids Res , vol.34 , pp. 3465-3475
    • Zhang, Y.1    Liu, X.S.2    Liu, Q.R.3    Wei, L.4
  • 34
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • J.L. Rinn, and H.Y. Chang Genome regulation by long noncoding RNAs Annu Rev Biochem 81 2012 145 166
    • (2012) Annu Rev Biochem , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 37
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • M.N. Cabili, C. Trapnell, L. Goff, M. Koziol, B. Tazon-Vega, A. Regev, and J.L. Rinn Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses Gene Dev 25 2011 1915 1927
    • (2011) Gene Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 38
    • 65249099522 scopus 로고    scopus 로고
    • Disruption of the Smad7 gene promotes renal fibrosis and inflammation in unilateral ureteral obstruction (UUO) in mice
    • A.C. Chung, X.R. Huang, L. Zhou, R. Heuchel, K.N. Lai, and H.Y. Lan Disruption of the Smad7 gene promotes renal fibrosis and inflammation in unilateral ureteral obstruction (UUO) in mice Nephrol Dial Transplant 24 2009 1443 1454
    • (2009) Nephrol Dial Transplant , vol.24 , pp. 1443-1454
    • Chung, A.C.1    Huang, X.R.2    Zhou, L.3    Heuchel, R.4    Lai, K.N.5    Lan, H.Y.6
  • 39
    • 29444457713 scopus 로고    scopus 로고
    • Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
    • K.C. Pang, M.C. Frith, and J.S. Mattick Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function Trends Genet 22 2006 1 5
    • (2006) Trends Genet , vol.22 , pp. 1-5
    • Pang, K.C.1    Frith, M.C.2    Mattick, J.S.3
  • 41
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • C.P. Ponting, P.L. Oliver, and W. Reik Evolution and functions of long noncoding RNAs Cell 136 2009 629 641
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 42
    • 84871735806 scopus 로고    scopus 로고
    • Noncoder: A web interface for exon array-based detection of long non-coding RNAs
    • P. Gellert, Y. Ponomareva, T. Braun, and S. Uchida Noncoder: a web interface for exon array-based detection of long non-coding RNAs Nucleic Acids Res 41 2013 e20
    • (2013) Nucleic Acids Res , vol.41 , pp. 20
    • Gellert, P.1    Ponomareva, Y.2    Braun, T.3    Uchida, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.