메뉴 건너뛰기




Volumn 66, Issue 1, 2014, Pages 43-52

Evolution of viral sensing RIG-I-like receptor genes in Leporidae genera Oryctolagus, Sylvilagus, and Lepus

Author keywords

Evolution; Leporid; Myxoma virus; Positive selection; RIG I like receptors

Indexed keywords

COMPLEMENTARY DNA; MELANOMA DIFFERENTIATION ASSOCIATED FACTOR 5; RECEPTOR; RETINOIC ACID INDUCIBLE PROTEIN I; RIG I LIKE RECEPTOR; UNCLASSIFIED DRUG; VIRUS RNA;

EID: 84891830863     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-013-0740-7     Document Type: Article
Times cited : (24)

References (47)
  • 1
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • 1:CAS:528:DC%2BD3MXlslOisLw%3D 11470850 10.1093/oxfordjournals.molbev. a003945
    • Anisimova M, Bielawski JP, Yang Z (2001) Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol 18(8):1585-1592
    • (2001) Mol Biol Evol , vol.18 , Issue.8 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 2
    • 65649083024 scopus 로고    scopus 로고
    • Regulation of signal transduction by enzymatically inactive antiviral RNA helicase proteins MDA5, RIG-I, and LGP2
    • 10.1074/jbc.M807365200 1:CAS:528:DC%2BD1MXjvFKktLs%3D 19211564 10.1074/jbc.M807365200
    • Bamming D, Horvath CM (2009) Regulation of signal transduction by enzymatically inactive antiviral RNA helicase proteins MDA5, RIG-I, and LGP2. J Biol Chem 284(15):9700-9712. doi: 10.1074/jbc.M807365200
    • (2009) J Biol Chem , vol.284 , Issue.15 , pp. 9700-9712
    • Bamming, D.1    Horvath, C.M.2
  • 3
    • 77957997708 scopus 로고    scopus 로고
    • Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing
    • 10.1073/pnas.1005077107 1:CAS:528:DC%2BC3cXhtF2gtrzM 2941304 20805493 10.1073/pnas.1005077107
    • Baum A, Sachidanandam R, Garcia-Sastre A (2010) Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing. Proc Natl Acad Sci U S A 107(37):16303-16308. doi: 10.1073/pnas.1005077107
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.37 , pp. 16303-16308
    • Baum, A.1    Sachidanandam, R.2    Garcia-Sastre, A.3
  • 4
    • 0034634305 scopus 로고    scopus 로고
    • Coevolution of host and virus: Cellular localization of virus in myxoma virus infection of resistant and susceptible European rabbits
    • 10.1006/viro.2000.0505 1:CAS:528:DC%2BD3cXnslGjsbs%3D 11062038 10.1006/viro.2000.0505
    • Best SM, Collins SV, Kerr PJ (2000) Coevolution of host and virus: cellular localization of virus in myxoma virus infection of resistant and susceptible European rabbits. Virology 277(1):76-91. doi: 10.1006/viro.2000.0505
    • (2000) Virology , vol.277 , Issue.1 , pp. 76-91
    • Best, S.M.1    Collins, S.V.2    Kerr, P.J.3
  • 5
    • 0030998585 scopus 로고    scopus 로고
    • The trans-species nature of rabbit b locus polymorphism is supported by studies on the snow-shoe hare
    • 1:CAS:528:DyaK2sXjt12qtr0%3D 9089105 10.1007/s002510050229
    • Bouton C, van der Loo W (1997) The trans-species nature of rabbit b locus polymorphism is supported by studies on the snow-shoe hare. Immunogenetics 45(6):444-446
    • (1997) Immunogenetics , vol.45 , Issue.6 , pp. 444-446
    • Bouton, C.1    Van Der Loo, W.2
  • 6
    • 84857393830 scopus 로고    scopus 로고
    • Activation of RIG-I-like receptor signal transduction
    • 10.3109/10409238.2011.630974 1:CAS:528:DC%2BC38XislOltbc%3D 3288412 22066529 10.3109/10409238.2011.630974
    • Bruns AM, Horvath CM (2012) Activation of RIG-I-like receptor signal transduction. Crit Rev Biochem Mol Biol 47(2):194-206. doi: 10.3109/10409238. 2011.630974
    • (2012) Crit Rev Biochem Mol Biol , vol.47 , Issue.2 , pp. 194-206
    • Bruns, A.M.1    Horvath, C.M.2
  • 7
    • 38649089789 scopus 로고    scopus 로고
    • The C-terminal regulatory domain is the RNA 5′-triphosphate sensor of RIG-I
    • 10.1016/j.molcel.2007.10.032 1:CAS:528:DC%2BD1cXhvVOks74%3D 18243112 10.1016/j.molcel.2007.10.032
    • Cui S, Eisenacher K, Kirchhofer A, Brzozka K, Lammens A, Lammens K, Fujita T, Conzelmann KK, Krug A, Hopfner KP (2008) The C-terminal regulatory domain is the RNA 5′-triphosphate sensor of RIG-I. Mol Cell 29(2):169-179. doi: 10.1016/j.molcel.2007.10.032
    • (2008) Mol Cell , vol.29 , Issue.2 , pp. 169-179
    • Cui, S.1    Eisenacher, K.2    Kirchhofer, A.3    Brzozka, K.4    Lammens, A.5    Lammens, K.6    Fujita, T.7    Conzelmann, K.K.8    Krug, A.9    Hopfner, K.P.10
  • 8
    • 80555131036 scopus 로고    scopus 로고
    • Study of Sylvilagus rabbit TRIM5alpha species-specific domain: How ancient endoviruses could have shaped the antiviral repertoire in Lagomorpha
    • 10.1186/1471-2148-11-294 3208668 21982459 10.1186/1471-2148-11-294
    • de Matos AL, van der Loo W, Areal H, Lanning DK, Esteves PJ (2011) Study of Sylvilagus rabbit TRIM5alpha species-specific domain: how ancient endoviruses could have shaped the antiviral repertoire in Lagomorpha. BMC Evol Biol 11:294. doi: 10.1186/1471-2148-11-294
    • (2011) BMC Evol Biol , vol.11 , pp. 294
    • De Matos, A.L.1    Van Der Loo, W.2    Areal, H.3    Lanning, D.K.4    Esteves, P.J.5
  • 9
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
    • 10.1093/bioinformatics/btq429 1:CAS:528:DC%2BC3cXht1Whtb7F 20671151 10.1093/bioinformatics/btq429
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26(19):2455-2457. doi: 10.1093/bioinformatics/btq429
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 10
    • 84876698263 scopus 로고    scopus 로고
    • Intracellular pathogen detection by RIG-I-Like receptors
    • 10.1016/B978-0-12-410524-9.00004-9 1:CAS:528:DC%2BC3sXhtlWksL7I 23611287 10.1016/B978-0-12-410524-9.00004-9
    • Dixit E, Kagan JC (2013) Intracellular pathogen detection by RIG-I-Like receptors. Adv Immunol 117:99-125. doi: 10.1016/B978-0-12-410524-9.00004-9
    • (2013) Adv Immunol , vol.117 , pp. 99-125
    • Dixit, E.1    Kagan, J.C.2
  • 11
    • 29144519510 scopus 로고    scopus 로고
    • The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: An unusual case of transspecies polymorphism
    • 10.1007/s00251-005-0022-0 1:CAS:528:DC%2BD2MXhtlekurvP 16247606 10.1007/s00251-005-0022-0
    • Esteves PJ, Lanning D, Ferrand N, Knight KL, Zhai SK, van der Loo W (2005) The evolution of the immunoglobulin heavy chain variable region (IgVH) in Leporids: an unusual case of transspecies polymorphism. Immunogenetics 57(11):874-882. doi: 10.1007/s00251-005-0022-0
    • (2005) Immunogenetics , vol.57 , Issue.11 , pp. 874-882
    • Esteves, P.J.1    Lanning, D.2    Ferrand, N.3    Knight, K.L.4    Zhai, S.K.5    Van Der Loo, W.6
  • 13
    • 59849092488 scopus 로고    scopus 로고
    • Evolutionary history of an MHC gene in two leporid species: Characterisation of Mhc-DQA in the European brown hare and comparison with the European rabbit
    • 10.1007/s00251-008-0349-4 19104797 10.1007/s00251-008-0349-4
    • Gouy de Bellocq J, Suchentrunk F, Baird SJ, Schaschl H (2009) Evolutionary history of an MHC gene in two leporid species: characterisation of Mhc-DQA in the European brown hare and comparison with the European rabbit. Immunogenetics 61(2):131-144. doi: 10.1007/s00251-008-0349-4
    • (2009) Immunogenetics , vol.61 , Issue.2 , pp. 131-144
    • Gouy De Bellocq, J.1    Suchentrunk, F.2    Baird, S.J.3    Schaschl, H.4
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
    • Hall T (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.1
  • 15
    • 80052143412 scopus 로고    scopus 로고
    • RIG-I-like receptors: Cytoplasmic sensors for non-self RNA
    • 10.1111/j.1600-065X.2011.01052.x 21884169 10.1111/j.1600-065X.2011.01052. x
    • Kato H, Takahasi K, Fujita T (2011) RIG-I-like receptors: cytoplasmic sensors for non-self RNA. Immunol Rev 243(1):91-98. doi: 10.1111/j.1600-065X. 2011.01052.x
    • (2011) Immunol Rev , vol.243 , Issue.1 , pp. 91-98
    • Kato, H.1    Takahasi, K.2    Fujita, T.3
  • 16
    • 31344461659 scopus 로고    scopus 로고
    • Innate immune recognition of viral infection
    • 10.1038/ni1303 1:CAS:528:DC%2BD28Xlt1ertA%3D%3D 16424890 10.1038/ni1303
    • Kawai T, Akira S (2006) Innate immune recognition of viral infection. Nat Immunol 7(2):131-137. doi: 10.1038/ni1303
    • (2006) Nat Immunol , vol.7 , Issue.2 , pp. 131-137
    • Kawai, T.1    Akira, S.2
  • 17
    • 84857424101 scopus 로고    scopus 로고
    • Myxomatosis in Australia and Europe: A model for emerging infectious diseases
    • 10.1016/j.antiviral.2012.01.009 1:CAS:528:DC%2BC38XjtlOmu7c%3D 22333483 10.1016/j.antiviral.2012.01.009
    • Kerr PJ (2012) Myxomatosis in Australia and Europe: a model for emerging infectious diseases. Antiviral Res 93(3):387-415. doi: 10.1016/j.antiviral.2012. 01.009
    • (2012) Antiviral Res , vol.93 , Issue.3 , pp. 387-415
    • Kerr, P.J.1
  • 18
    • 84877153299 scopus 로고    scopus 로고
    • Viral infections of rabbits
    • 10.1016/j.cvex.2013.02.002 23642871 10.1016/j.cvex.2013.02.002
    • Kerr PJ, Donnelly TM (2013) Viral infections of rabbits. Vet Clin North Am Exot Anim Pract 16(2):437-468. doi: 10.1016/j.cvex.2013.02.002
    • (2013) Vet Clin North Am Exot Anim Pract , vol.16 , Issue.2 , pp. 437-468
    • Kerr, P.J.1    Donnelly, T.M.2
  • 19
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • 10.1093/molbev/msi105 15703242 10.1093/molbev/msi105
    • Kosakovsky Pond SL, Frost SD (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22(5):1208-1222. doi: 10.1093/molbev/msi105
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 20
    • 33845361366 scopus 로고    scopus 로고
    • GARD: A genetic algorithm for recombination detection
    • 10.1093/bioinformatics/btl474 17110367 10.1093/bioinformatics/btl474
    • Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD (2006) GARD: a genetic algorithm for recombination detection. Bioinformatics 22(24):3096-3098. doi: 10.1093/bioinformatics/btl474
    • (2006) Bioinformatics , vol.22 , Issue.24 , pp. 3096-3098
    • Kosakovsky Pond, S.L.1    Posada, D.2    Gravenor, M.B.3    Woelk, C.H.4    Frost, S.D.5
  • 21
    • 84878816192 scopus 로고    scopus 로고
    • Evolution and divergence of the mammalian SAMD9/SAMD9L gene family
    • 1:CAS:528:DC%2BC3sXhtVGqtbrO 3685527 23758988 10.1186/1471-2148-13-121
    • Lemos de Matos A, Liu J, McFadden G, Esteves PJ (2013) Evolution and divergence of the mammalian SAMD9/SAMD9L gene family. BMC Evol Biol 13(1):121
    • (2013) BMC Evol Biol , vol.13 , Issue.1 , pp. 121
    • Lemos De Matos, A.1    Liu, J.2    McFadden, G.3    Esteves, P.J.4
  • 22
    • 78649811429 scopus 로고    scopus 로고
    • The immunoregulatory properties of oncolytic myxoma virus and their implications in therapeutics
    • 10.1016/j.micinf.2010.08.012 1:CAS:528:DC%2BC3cXhsFajs7jM 2998584 20832500 10.1016/j.micinf.2010.08.012
    • Liu J, Wennier S, McFadden G (2010) The immunoregulatory properties of oncolytic myxoma virus and their implications in therapeutics. Microbes Infect 12(14-15):1144-1152. doi: 10.1016/j.micinf.2010.08.012
    • (2010) Microbes Infect , vol.12 , Issue.14-15 , pp. 1144-1152
    • Liu, J.1    Wennier, S.2    McFadden, G.3
  • 23
    • 79956314622 scopus 로고    scopus 로고
    • Immune signaling by RIG-I-like receptors
    • 10.1016/j.immuni.2011.05.003 1:CAS:528:DC%2BC3MXms12rs7s%3D 3177755 21616437 10.1016/j.immuni.2011.05.003
    • Loo YM, Gale M Jr (2011) Immune signaling by RIG-I-like receptors. Immunity 34(5):680-692. doi: 10.1016/j.immuni.2011.05.003
    • (2011) Immunity , vol.34 , Issue.5 , pp. 680-692
    • Loo, Y.M.1    Gale Jr., M.2
  • 24
    • 0037468544 scopus 로고    scopus 로고
    • Amino acid substitutions in the human genome: Evolutionary implications of single nucleotide polymorphisms
    • 1:CAS:528:DC%2BD3sXhtlKju7s%3D 12609737 10.1016/S0378-1119(03)00379-2
    • Majewski J, Ott J (2003) Amino acid substitutions in the human genome: evolutionary implications of single nucleotide polymorphisms. Gene 305(2):167-173
    • (2003) Gene , vol.305 , Issue.2 , pp. 167-173
    • Majewski, J.1    Ott, J.2
  • 25
    • 3242703950 scopus 로고    scopus 로고
    • A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the miocene
    • 10.1080/10635150490445715 15503672 10.1080/10635150490445715
    • Matthee CA, Van Vuuren BJ, Bell D, Robinson TJ (2004) A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the miocene. Syst Biol 53(3):433-447. doi: 10.1080/10635150490445715
    • (2004) Syst Biol , vol.53 , Issue.3 , pp. 433-447
    • Matthee, C.A.1    Van Vuuren, B.J.2    Bell, D.3    Robinson, T.J.4
  • 26
    • 84864605220 scopus 로고    scopus 로고
    • Detecting individual sites subject to episodic diversifying selection
    • 10.1371/journal.pgen.1002764 1:CAS:528:DC%2BC38XhtVOnsLnI 3395634 22807683 10.1371/journal.pgen.1002764
    • Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL (2012) Detecting individual sites subject to episodic diversifying selection. PLoS Genet 8(7):e1002764. doi: 10.1371/journal.pgen.1002764
    • (2012) PLoS Genet , vol.8 , Issue.7 , pp. 1002764
    • Murrell, B.1    Wertheim, J.O.2    Moola, S.3    Weighill, T.4    Scheffler, K.5    Kosakovsky Pond, S.L.6
  • 27
    • 84876522258 scopus 로고    scopus 로고
    • FUBAR: A fast, unconstrained bayesian approximation for inferring selection
    • 10.1093/molbev/mst030 1:CAS:528:DC%2BC3sXlvFWgsLk%3D 23420840 10.1093/molbev/mst030
    • Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K (2013) FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol 30(5):1196-1205. doi: 10.1093/molbev/mst030
    • (2013) Mol Biol Evol , vol.30 , Issue.5 , pp. 1196-1205
    • Murrell, B.1    Moola, S.2    Mabona, A.3    Weighill, T.4    Sheward, D.5    Kosakovsky Pond, S.L.6    Scheffler, K.7
  • 28
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera - A visualization system for exploratory research and analysis
    • 10.1002/jcc.20084 1:CAS:528:DC%2BD2cXmvVOhsbs%3D 15264254 10.1002/jcc.20084
    • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612. doi: 10.1002/jcc.20084
    • (2004) J Comput Chem , vol.25 , Issue.13 , pp. 1605-1612
    • Pettersen, E.F.1    Goddard, T.D.2    Huang, C.C.3    Couch, G.S.4    Greenblatt, D.M.5    Meng, E.C.6    Ferrin, T.E.7
  • 29
    • 84886789456 scopus 로고    scopus 로고
    • Sequencing of modern Lepus VDJ genes shows that the usage of VHn genes has been retained in both Oryctolagus and Lepus that diverged 12 million years ago
    • Pinheiro A, Mera IF, Alves P, Gortázar C, Fuente J, Esteves P (2013) Sequencing of modern Lepus VDJ genes shows that the usage of VHn genes has been retained in both Oryctolagus and Lepus that diverged 12 million years ago. Immunogenetics 65:777-784
    • (2013) Immunogenetics , vol.65 , pp. 777-784
    • Pinheiro, A.M.1
  • 30
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • 10.1093/bioinformatics/bti320 1:CAS:528:DC%2BD2MXktl2ru7g%3D 15713735 10.1093/bioinformatics/bti320
    • Pond SL, Frost SD (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21(10):2531-2533. doi: 10.1093/bioinformatics/bti320
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2531-2533
    • Pond, S.L.1    Frost, S.D.2
  • 31
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • 10.1093/molbev/msn083 1:CAS:528:DC%2BD1cXotlKgsb4%3D 18397919 10.1093/molbev/msn083
    • Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25(7):1253-1256. doi: 10.1093/molbev/msn083
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 32
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • 10.1007/s00239-001-0034-9 1:CAS:528:DC%2BD38XhsFKks78%3D 11847565
    • Posada D, Crandall KA (2002) The effect of recombination on the accuracy of phylogeny estimation. J Mol Evol 54(3):396-402. doi: 10.1007/s00239-001-0034- 9
    • (2002) J Mol Evol , vol.54 , Issue.3 , pp. 396-402
    • Posada, D.1    Crandall, K.A.2
  • 35
    • 79960765634 scopus 로고    scopus 로고
    • Sensing of viral nucleic acids by RIG-I: From translocation to translation
    • 10.1016/j.ejcb.2011.01.015 1:CAS:528:DC%2BC3MXhsV2ms73F 3155743 21496944 10.1016/j.ejcb.2011.01.015
    • Schmidt A, Rothenfusser S, Hopfner KP (2012) Sensing of viral nucleic acids by RIG-I: from translocation to translation. Eur J Cell Biol 91(1):78-85. doi: 10.1016/j.ejcb.2011.01.015
    • (2012) Eur J Cell Biol , vol.91 , Issue.1 , pp. 78-85
    • Schmidt, A.1    Rothenfusser, S.2    Hopfner, K.P.3
  • 36
    • 80051988043 scopus 로고    scopus 로고
    • The current status and future directions of myxoma virus, a master in immune evasion
    • 10.1186/1297-9716-42-76 21658227 10.1186/1297-9716-42-76
    • Spiesschaert B, McFadden G, Hermans K, Nauwynck H, Van de Walle GR (2011) The current status and future directions of myxoma virus, a master in immune evasion. Vet Res 42(1):76. doi: 10.1186/1297-9716-42-76
    • (2011) Vet Res , vol.42 , Issue.1 , pp. 76
    • Spiesschaert, B.1    McFadden, G.2    Hermans, K.3    Nauwynck, H.4    Van De Walle, G.R.5
  • 37
    • 48149094929 scopus 로고    scopus 로고
    • Diversity and evolutionary history of the MHC DQA gene in leporids
    • 10.1007/s00251-008-0309-z 1:CAS:528:DC%2BD1cXovF2itL8%3D 18584169 10.1007/s00251-008-0309-z
    • Surridge AK, van der Loo W, Abrantes J, Carneiro M, Hewitt GM, Esteves PJ (2008) Diversity and evolutionary history of the MHC DQA gene in leporids. Immunogenetics 60(9):515-525. doi: 10.1007/s00251-008-0309-z
    • (2008) Immunogenetics , vol.60 , Issue.9 , pp. 515-525
    • Surridge, A.K.1    Van Der Loo, W.2    Abrantes, J.3    Carneiro, M.4    Hewitt, G.M.5    Esteves, P.J.6
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 1:CAS:528:DyaK2MXitlSgu74%3D 308517 7984417 10.1093/nar/22.22.4673
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673-4680
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 39
    • 60049085766 scopus 로고    scopus 로고
    • Sharing of Endogenous Lentiviral Gene Fragments among Leporid Lineages Separated for More than 12 Million Years
    • van der Loo W, Abrantes J, Esteves PJ (2009) Sharing of Endogenous Lentiviral Gene Fragments among Leporid Lineages Separated for More than 12 Million Years. J Virol 83:2386-2388
    • (2009) J Virol , vol.83 , pp. 2386-2388
    • Van Der Loo, W.1    Abrantes, J.2    Esteves, P.J.3
  • 41
    • 48249149162 scopus 로고    scopus 로고
    • RIG-I mediates the co-induction of tumor necrosis factor and type i interferon elicited by myxoma virus in primary human macrophages
    • 10.1371/journal.ppat.1000099 2438611 18617992 10.1371/journal.ppat. 1000099
    • Wang F, Gao X, Barrett JW, Shao Q, Bartee E, Mohamed MR, Rahman M, Werden S, Irvine T, Cao J, Dekaban GA, McFadden G (2008) RIG-I mediates the co-induction of tumor necrosis factor and type I interferon elicited by myxoma virus in primary human macrophages. PLoS Pathog 4(7):e1000099. doi: 10.1371/journal.ppat.1000099
    • (2008) PLoS Pathog , vol.4 , Issue.7 , pp. 1000099
    • Wang, F.1    Gao, X.2    Barrett, J.W.3    Shao, Q.4    Bartee, E.5    Mohamed, M.R.6    Rahman, M.7    Werden, S.8    Irvine, T.9    Cao, J.10    Dekaban, G.A.11    McFadden, G.12
  • 42
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088 1:CAS:528:DC%2BD2sXpsVGrs7c%3D 17483113 10.1093/molbev/msm088
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24(8):1586-1591. doi: 10.1093/molbev/msm088
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 43
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical bayes inference of amino acid sites under positive selection
    • 10.1093/molbev/msi097 1:CAS:528:DC%2BD2MXjtFaisbk%3D 15689528 10.1093/molbev/msi097
    • Yang Z, Wong WS, Nielsen R (2005) Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol 22(4):1107-1118. doi: 10.1093/molbev/msi097
    • (2005) Mol Biol Evol , vol.22 , Issue.4 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 45
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • 10.1186/1471-2105-9-40 10.1186/1471-2105-9-40
    • Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinforma 9:40. doi: 10.1186/1471-2105-9-40
    • (2008) BMC Bioinforma , vol.9 , pp. 40
    • Zhang, Y.1
  • 46
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • 10.1093/molbev/msi237 1:CAS:528:DC%2BD2MXht1KgtLbM 16107592 10.1093/molbev/msi237
    • Zhang J, Nielsen R, Yang Z (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 22(12):2472-2479. doi: 10.1093/molbev/msi237
    • (2005) Mol Biol Evol , vol.22 , Issue.12 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.