-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium
-
The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. 2004. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
3
-
-
0038343499
-
MicroRNA pathways in flies and worms: Growth, death, fat, stress, and timing
-
Ambros V. 2003. MicroRNA pathways in flies and worms: Growth, death, fat, stress, and timing. Cell 113: 673-676.
-
(2003)
Cell
, vol.113
, pp. 673-676
-
-
Ambros, V.1
-
4
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP. 2008. The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
5
-
-
23944514849
-
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
-
Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. 2005. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122: 553-563.
-
(2005)
Cell
, vol.122
, pp. 553-563
-
-
Bagga, S.1
Bracht, J.2
Hunter, S.3
Massirer, K.4
Holtz, J.5
Eachus, R.6
Pasquinelli, A.E.7
-
6
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
7
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
8
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
Bartel DP, Chen CZ. 2004. Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs. Nat Rev Genet 5: 396-400.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.Z.2
-
9
-
-
38549124383
-
The microRNA.org resource: Targets and expression
-
Betel D,Wilson M, Gabow A, Marks DS, Sander C. 2008. The microRNA.org resource: Targets and expression. Nucleic Acids Res 36: D149-D153.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
10
-
-
75649102520
-
Sex-specific and lineage-specific alternative splicing in primates
-
Blekhman R, Marioni JC, Zumbo P, Stephens M, Gilad Y. 2010. Sex-specific and lineage-specific alternative splicing in primates. Genome Res 20: 180-189.
-
(2010)
Genome Res
, vol.20
, pp. 180-189
-
-
Blekhman, R.1
Marioni, J.C.2
Zumbo, P.3
Stephens, M.4
Gilad, Y.5
-
11
-
-
78651516723
-
Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts
-
Borel C, Deutsch S, Letourneau A, Migliavacca E, Montgomery SB, Dimas AS, Vejnar CE, Attar H, Gagnebin M, Gehrig C, et al. 2011. Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts. Genome Res 21: 68-73.
-
(2011)
Genome Res
, vol.21
, pp. 68-73
-
-
Borel, C.1
Deutsch, S.2
Letourneau, A.3
Migliavacca, E.4
Montgomery, S.B.5
Dimas, A.S.6
Vejnar, C.E.7
Attar, H.8
Gagnebin, M.9
Gehrig, C.10
-
12
-
-
18044377963
-
Principles of microRNA-target recognition
-
doi: 10.1371/journal.pbio.0030085
-
Brennecke J, Stark A, Russell RB, Cohen SM. 2005. Principles of microRNA-target recognition. PLoS Biol 3: e85. doi: 10.1371/journal.pbio. 0030085.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
13
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin GA, Croce CM. 2006. MicroRNA signatures in human cancers. Nat Rev Cancer 6: 857-866.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
14
-
-
33644857025
-
Gene regulation by microRNAs
-
Carthew RW. 2006. Gene regulation by microRNAs. Curr Opin Genet Dev 16: 203-208.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 203-208
-
-
Carthew, R.W.1
-
15
-
-
34250682267
-
Deep conservation of miRNA-target relationships and 3′ UTR motifs in vertebrates, flies and nematodes
-
Chen K, Rajewsky N. 2006. Deep conservation of miRNA-target relationships and 3′ UTR motifs in vertebrates, flies and nematodes. Cold Spring Harb Symp Quant Biol 71: 149-156.
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 149-156
-
-
Chen, K.1
Rajewsky, N.2
-
16
-
-
0036899513
-
The genetics of variation in gene expression
-
Cheung VG, Spielman RS. 2002. The genetics of variation in gene expression. Nat Genet (Suppl) 32: 522-525.
-
(2002)
Nat Genet (Suppl)
, vol.32
, pp. 522-525
-
-
Cheung, V.G.1
Spielman, R.S.2
-
17
-
-
0037370311
-
Natural variation in human gene expression assessed in lymphoblastoid cells
-
Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, Morley M, Spielman RS. 2003a. Natural variation in human gene expression assessed in lymphoblastoid cells. Nat Genet 33: 422-425.
-
(2003)
Nat Genet
, vol.33
, pp. 422-425
-
-
Cheung, V.G.1
Conlin, L.K.2
Weber, T.M.3
Arcaro, M.4
Jen, K.Y.5
Morley, M.6
Spielman, R.S.7
-
18
-
-
3242700336
-
Genetics of quantitative variation in human gene expression
-
Cheung VG, Jen KY,Weber T, Morley M, Devlin JL, Ewens KG, Spielman RS. 2003b. Genetics of quantitative variation in human gene expression. Cold Spring Harb Symp Quant Biol 68: 403-407.
-
(2003)
Cold Spring Harb Symp Quant Biol
, vol.68
, pp. 403-407
-
-
Cheung, V.G.1
Jen, K.Y.2
Weber, T.3
Morley, M.4
Devlin, J.L.5
Ewens, K.G.6
Spielman, R.S.7
-
19
-
-
33745577150
-
A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep
-
Clop A. 2006. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat Genet 38: 813-818.
-
(2006)
Nat Genet
, vol.38
, pp. 813-818
-
-
Clop, A.1
-
20
-
-
34447640714
-
MicroRNA regulation and interspecific variation of gene expression
-
Cui Q, Yu Z, Purisima EO, Wang E. 2007. MicroRNA regulation and interspecific variation of gene expression. Trends Genet 23: 372-375.
-
(2007)
Trends Genet
, vol.23
, pp. 372-375
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
21
-
-
33750616076
-
Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma
-
doi: 10.1186/1471-2164-7-252
-
Diboun I, Wernisch L, Orengo CA, Koltzenburg M. 2006. Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma. BMC Genomics 7: 252. doi: 10.1186/1471-2164-7-252.
-
(2006)
BMC Genomics
, vol.7
, pp. 252
-
-
Diboun, I.1
Wernisch, L.2
Orengo, C.A.3
Koltzenburg, M.4
-
23
-
-
0842321501
-
MicroRNA targets in Drosophila
-
doi: 10.1186/gb-2003-5-1-r1
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS. 2003. MicroRNA targets in Drosophila. Genome Biol 5: R1. doi: 10.1186/gb-2003-5-1-r1.
-
(2003)
Genome Biol
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
24
-
-
33645294070
-
Oncomirs - MicroRNAs with a role in cancer
-
Esquela-Kerscher A, Slack FJ. 2006. Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer 6: 259-269.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 259-269
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
25
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
doi: 10.1371/journal.pone.0000219
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, et al. 2007. High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes. PLoS ONE 2: e219. doi: 10.1371/journal.pone.0000219.
-
(2007)
PLoS ONE
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
-
27
-
-
52349122355
-
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
-
doi: 10.1371/journal.pone.0003164
-
Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, Gerber AP. 2008. Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS ONE 3: e3164. doi: 10.1371/journal.pone.0003164.
-
(2008)
PLoS ONE
, vol.3
-
-
Galgano, A.1
Forrer, M.2
Jaskiewicz, L.3
Kanitz, A.4
Zavolan, M.5
Gerber, A.P.6
-
28
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal M, Zamore PD. 2009. Small silencing RNAs: An expanding universe. Nat Rev Genet 10: 94-108.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
29
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. 2007. MicroRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
30
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP. 2008. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193-1197.
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
King, N.6
Degnan, B.M.7
Rokhsar, D.S.8
Bartel, D.P.9
-
31
-
-
76749155514
-
A composite of multiple signals distinguishes causal variants in regions of positive selection
-
Grossman SR, Shylakhter I, Karlsson EK, Byrne EH, Morales S, Frieden G, Hostetter E, Angelino E, Garber M, Zuk O, et al. 2010. A composite of multiple signals distinguishes causal variants in regions of positive selection. Science 327: 883-886.
-
(2010)
Science
, vol.327
, pp. 883-886
-
-
Grossman, S.R.1
Shylakhter, I.2
Karlsson, E.K.3
Byrne, E.H.4
Morales, S.5
Frieden, G.6
Hostetter, E.7
Angelino, E.8
Garber, M.9
Zuk, O.10
-
32
-
-
27344456287
-
MicroRNA target predictions across seven Drosophila species and comparison to mammalian targets
-
doi: 10.1371/journal.pcbi.0010013
-
Grun D, Wang YL, Langenberger D, Gunsalus KC, Rajewsky N. 2005. microRNA target predictions across seven Drosophila species and comparison to mammalian targets. PLoS Comput Biol 1: e13. doi: 10.1371/journal.pcbi.0010013.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Grun, D.1
Wang, Y.L.2
Langenberger, D.3
Gunsalus, K.C.4
Rajewsky, N.5
-
33
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP. 2010. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
34
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, et al. 2010. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano Jr., M.8
Jungkamp, A.C.9
Munschauer, M.10
-
35
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He L, Hannon GJ. 2004. MicroRNAs: Small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
36
-
-
84984765621
-
Canalization of development by microRNAs
-
Hornstein E, Shomron S. 2006. Canalization of development by microRNAs. Nat Genet 38: S20-S24.
-
(2006)
Nat Genet
, vol.38
-
-
Hornstein, E.1
Shomron, S.2
-
37
-
-
79959997653
-
mirConnX: Condition-specific mRNA-microRNA network integrator
-
Huang GT, Athanassiou C, Benos PV. 2011a. mirConnX: Condition-specific mRNA-microRNA network integrator. Nucleic Acids Res 39: W416-W423.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Huang, G.T.1
Athanassiou, C.2
Benos, P.V.3
-
38
-
-
79960089831
-
Population differences in microRNA expression and biological implications
-
Huang RS, Gamazon ER, Ziliak D, Wen Y, Im HK, Zhang W, Wing C, Duan S, Bleibel WK, Cox NJ, et al. 2011b. Population differences in microRNA expression and biological implications. RNA Biol 8: 692-701.
-
(2011)
RNA Biol
, vol.8
, pp. 692-701
-
-
Huang, R.S.1
Gamazon, E.R.2
Ziliak, D.3
Wen, Y.4
Im, H.K.5
Zhang, W.6
Wing, C.7
Duan, S.8
Bleibel, W.K.9
Cox, N.J.10
-
39
-
-
73349126396
-
Geographical genomics of human leukocyte gene expression variation in southern Morocco
-
Idaghdour Y, Czika W, Shianna KV, Lee SH, Visscher PM, Martin HC, Miclaus K, Jadallah SJ, Goldstein DB, Wolfinger RD, et al. 2010. Geographical genomics of human leukocyte gene expression variation in southern Morocco. Nat Genet 42: 62-67.
-
(2010)
Nat Genet
, vol.42
, pp. 62-67
-
-
Idaghdour, Y.1
Czika, W.2
Shianna, K.V.3
Lee, S.H.4
Visscher, P.M.5
Martin, H.C.6
Miclaus, K.7
Jadallah, S.J.8
Goldstein, D.B.9
Wolfinger, R.D.10
-
40
-
-
79953159361
-
MicroRNA profiling in Epstein-Barr virus-associated B-cell lymphoma
-
Imig J, Motsch N, Zhu JY, Barth S, Okoniewski M, Reineke T, Tinguely M, Faggioni A, Trivedi P, Meister G, et al. 2011. microRNA profiling in Epstein-Barr virus-associated B-cell lymphoma. Nucleic Acids Res 39: 1880-1893.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1880-1893
-
-
Imig, J.1
Motsch, N.2
Zhu, J.Y.3
Barth, S.4
Okoniewski, M.5
Reineke, T.6
Tinguely, M.7
Faggioni, A.8
Trivedi, P.9
Meister, G.10
-
41
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
The International HapMap 3 Consortium
-
The International HapMap 3 Consortium. 2010. Integrating common and rare genetic variation in diverse human populations. Nature 467: 52-58.
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
-
42
-
-
58149179989
-
miR2Disease: A manually curated database for microRNA deregulation in human disease
-
Jiang Q,Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M,Wang G, Liu Y. 2009. miR2Disease: A manually curated database for microRNA deregulation in human disease. Nucleic Acids Res 37: D98-D104.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
Juan, L.4
Teng, M.5
Zhang, X.6
Li, M.7
Wang, G.8
Liu, Y.9
-
43
-
-
14044251458
-
Human microRNA targets
-
doi: 10.1371/journal.pbio.0020363
-
John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. 2004. Human microRNA targets. PLoS Biol 2: e363. doi: 10.1371/journal.pbio.0020363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
45
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. 2007. The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
46
-
-
33344477448
-
Genomics of microRNA
-
Kim VN, Nam JW. 2006. Genomics of microRNA. Trends Genet 22: 165-173.
-
(2006)
Trends Genet
, vol.22
, pp. 165-173
-
-
Kim, V.N.1
Nam, J.W.2
-
47
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, et al. 2005. Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
Da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
48
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, et al. 2007. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
Pfeffer, S.7
Rice, A.8
Kamphorst, A.O.9
Landthaler, M.10
-
49
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-RhoadesMW, Bartel DP, Burge CB. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
50
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
51
-
-
33751118533
-
MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila
-
Li Y, Wang Y, Lee JA, Gao FB. 2006. MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila. Genes Dev 20: 2793-2805.
-
(2006)
Genes Dev
, vol.20
, pp. 2793-2805
-
-
Li, Y.1
Wang, Y.2
Lee, J.A.3
Gao, F.B.4
-
52
-
-
64249144494
-
A microRNA imparts robustness against environmental fluctuation during development
-
Li X, Cassidy JJ, Reinke CA, Fischboeck S, Carthew RW. 2009. A microRNA imparts robustness against environmental fluctuation during development. Cell 137: 273-282.
-
(2009)
Cell
, vol.137
, pp. 273-282
-
-
Li, X.1
Cassidy, J.J.2
Reinke, C.A.3
Fischboeck, S.4
Carthew, R.W.5
-
53
-
-
75649145014
-
Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
-
Lu J, Clark AG. 2010. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res 20: 212-227.
-
(2010)
Genome Res
, vol.20
, pp. 212-227
-
-
Lu, J.1
Clark, A.G.2
-
54
-
-
48249150513
-
Adaptive evolution of newly emerged micro-RNA genes in Drosophila
-
Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. 2008a. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol Biol Evol 25: 929-938.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 929-938
-
-
Lu, J.1
Fu, Y.2
Kumar, S.3
Shen, Y.4
Zeng, K.5
Xu, A.6
Carthew, R.7
Wu, C.I.8
-
55
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. 2008b. The birth and death of microRNA genes in Drosophila. Nat Genet 40: 351-355.
-
(2008)
Nat Genet
, vol.40
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Wu, Q.3
Kumar, S.4
He, B.5
Shi, S.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.I.9
-
57
-
-
37749036293
-
Most Caenorhabditis elegans microRNAs are individually not essential for development or viability
-
doi: 10.1371/journal.pgen.0030215
-
Miska EA, Alvarez-Saavedra E, Abbott AL, Lau NC, Hellman AB, McGonagle SM, Bartel DP, Ambros VR, Horvitz HR. 2007. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet 3: e215. doi: 10.1371/journal.pgen.0030215.
-
(2007)
PLoS Genet
, vol.3
-
-
Miska, E.A.1
Alvarez-Saavedra, E.2
Abbott, A.L.3
Lau, N.C.4
Hellman, A.B.5
McGonagle, S.M.6
Bartel, D.P.7
Ambros, V.R.8
Horvitz, H.R.9
-
58
-
-
79960946869
-
Rare and common regulatory variation in population-scale sequenced human genomes
-
doi: 10.1371/journal.pgen. 1002144
-
Montgomery SB, Lappalainen T, Gutierrez-ArcelusM, Dermitzakis ET. 2011. Rare and common regulatory variation in population-scale sequenced human genomes. PLoS Genet 7: e1002144. doi: 10.1371/journal.pgen. 1002144.
-
(2011)
PLoS Genet
, vol.7
-
-
Montgomery, S.B.1
Lappalainen, T.2
Gutierrez-Arcelus, M.3
Dermitzakis, E.T.4
-
59
-
-
0033572284
-
The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
-
Olsen PH, Ambros V. 1999. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol 216: 671-680.
-
(1999)
Dev Biol
, vol.216
, pp. 671-680
-
-
Olsen, P.H.1
Ambros, V.2
-
60
-
-
79952302623
-
The role of incoherent microRNA-mediated feedforward loops in noise buffering
-
doi: 10.1371/journal.pcbi.1001101
-
Osella M, Bosia C, Cora D, Caselle M. 2011. The role of incoherent microRNA-mediated feedforward loops in noise buffering. PLoS Comput Biol 7: e1001101. doi: 10.1371/journal.pcbi.1001101.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Osella, M.1
Bosia, C.2
Cora, D.3
Caselle, M.4
-
61
-
-
58149203235
-
The database of experimentally supported targets: A functional update of TarBase
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. 2009. The database of experimentally supported targets: A functional update of TarBase. Nucleic Acids Res 37: D155-D158.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
62
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK. 2010. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature 464: 768-772.
-
(2010)
Nature
, vol.464
, pp. 768-772
-
-
Pickrell, J.K.1
Marioni, J.C.2
Pai, A.A.3
Degner, J.F.4
Engelhardt, B.E.5
Nkadori, E.6
Veyrieras, J.B.7
Stephens, M.8
Gilad, Y.9
Pritchard, J.K.10
-
63
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N. 2006. microRNA target predictions in animals. Nat Genet (Suppl) 38: S8-S13.
-
(2006)
Nat Genet (Suppl)
, vol.38
-
-
Rajewsky, N.1
-
64
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky N, Socci ND. 2004. Computational identification of microRNA targets. Dev Biol 267: 529-535.
-
(2004)
Dev Biol
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
65
-
-
33847665108
-
Human polymorphism at microRNAs and microRNA target sites
-
Saunders MA, Liang H, Li WH. 2007. Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci 104: 3300-3305.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 3300-3305
-
-
Saunders, M.A.1
Liang, H.2
Li, W.H.3
-
66
-
-
33644659734
-
Mammalian microRNAs: A small world for fine-tuning gene expression
-
Sevignani C, Calin GA, Siracusa LD, Croce CM. 2006. Mammalian microRNAs: A small world for fine-tuning gene expression. Mamm Genome 17: 189-202.
-
(2006)
Mamm Genome
, vol.17
, pp. 189-202
-
-
Sevignani, C.1
Calin, G.A.2
Siracusa, L.D.3
Croce, C.M.4
-
67
-
-
25844460031
-
Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
-
Sokol NS, Ambros V. 2005.Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth. Genes Dev 19: 2343-2354.
-
(2005)
Genes Dev
, vol.19
, pp. 2343-2354
-
-
Sokol, N.S.1
Ambros, V.2
-
68
-
-
33846631884
-
Common genetic variants account for differences in gene expression among ethnic groups
-
Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, Cheung VG. 2007. Common genetic variants account for differences in gene expression among ethnic groups. Nat Genet 39: 226-231.
-
(2007)
Nat Genet
, vol.39
, pp. 226-231
-
-
Spielman, R.S.1
Bastone, L.A.2
Burdick, J.T.3
Morley, M.4
Ewens, W.J.5
Cheung, V.G.6
-
69
-
-
4243170045
-
Identification of Drosophila microRNA targets
-
doi: 10.1371/journal.pbio.0000060
-
Stark A, Brennecke J, Russell RB, Cohen SM. 2003. Identification of Drosophila microRNA targets. PLoS Biol 1: e60. doi: 10.1371/journal.pbio. 0000060.
-
(2003)
PLoS Biol
, vol.1
-
-
Stark, A.1
Brennecke, J.2
Russell, R.B.3
Cohen, S.M.4
-
70
-
-
33847181678
-
Gene-expression variation within and among human populations
-
Storey JD, Madeoy J, Strout JL, Wurfel M, Ronald J, Akey JM. 2007. Gene-expression variation within and among human populations. Am J Hum Genet 80: 502-509.
-
(2007)
Am J Hum Genet
, vol.80
, pp. 502-509
-
-
Storey, J.D.1
Madeoy, J.2
Strout, J.L.3
Wurfel, M.4
Ronald, J.5
Akey, J.M.6
-
71
-
-
55449112185
-
Genome-wide associations of gene expression variation in humans
-
doi: 10.1371/journal.pgen.0010078
-
Stranger BE, Forrest MS, Clark AG, Minichiello MJ,Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavare S, et al. 2005. Genome-wide associations of gene expression variation in humans. PLoS Genet 1: e78. doi: 10.1371/journal.pgen.0010078.
-
(2005)
PLoS Genet
, vol.1
-
-
Stranger, B.E.1
Forrest, M.S.2
Clark, A.G.3
Minichiello, M.J.4
Deutsch, S.5
Lyle, R.6
Hunt, S.7
Kahl, B.8
Antonarakis, S.E.9
Tavare, S.10
-
72
-
-
33846978695
-
Relative impact of nucleotide and copy number variation on gene expression phenotypes
-
Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, et al. 2007a. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315: 848-853.
-
(2007)
Science
, vol.315
, pp. 848-853
-
-
Stranger, B.E.1
Forrest, M.S.2
Dunning, M.3
Ingle, C.E.4
Beazley, C.5
Thorne, N.6
Redon, R.7
Bird, C.P.8
De Grassi, A.9
Lee, C.10
-
73
-
-
34548738566
-
Population genomics of human gene expression
-
Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, et al. 2007b. Population genomics of human gene expression. Nat Genet 39: 1217-1224.
-
(2007)
Nat Genet
, vol.39
, pp. 1217-1224
-
-
Stranger, B.E.1
Nica, A.C.2
Forrest, M.S.3
Dimas, A.4
Bird, C.P.5
Beazley, C.6
Ingle, C.E.7
Dunning, M.8
Flicek, P.9
Koller, D.10
-
74
-
-
77955622855
-
Adverse interactions between micro-RNAs and target genes from different species
-
Tang T, Kumar S, Shen Y, Lu J, Wu M-L, Shi S, LiW-H, Wu C-I. 2010. Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci 107: 12935-12940.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 12935-12940
-
-
Tang, T.1
Kumar, S.2
Shen, Y.3
Lu, J.4
Wu, M.-L.5
Shi, S.6
Li, W.-H.7
Wu, C.-I.8
-
75
-
-
51149203927
-
Canalization of development and the inheritance of acquired characters
-
Waddington CH. 1942. Canalization of development and the inheritance of acquired characters. Nature 150: 563-565.
-
(1942)
Nature
, vol.150
, pp. 563-565
-
-
Waddington, C.H.1
-
76
-
-
0001102269
-
Genetic assimilation of an acquired character
-
Waddington CH. 1953. Genetic assimilation of an acquired character. Evolution 7: 118-126.
-
(1953)
Evolution
, vol.7
, pp. 118-126
-
-
Waddington, C.H.1
-
77
-
-
0002721909
-
Genetic assimilation of the bithorax phenotype
-
Waddington CH. 1956. Genetic assimilation of the bithorax phenotype. Evolution 10: 1-13.
-
(1956)
Evolution
, vol.10
, pp. 1-13
-
-
Waddington, C.H.1
-
78
-
-
67649989679
-
Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines
-
doi: 10.1371/journal.pone.0005878
-
Wang L, Oberg AL, Asmann YW, Sicotte H, McDonnell SK, Riska SM, Liu W, Steer CJ, Subramanian S, Cunningham JM, et al. 2009. Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines. PLoS ONE 4: e5878. doi: 10.1371/journal.pone.0005878.
-
(2009)
PLoS ONE
, vol.4
-
-
Wang, L.1
Oberg, A.L.2
Asmann, Y.W.3
Sicotte, H.4
McDonnell, S.K.5
Riska, S.M.6
Liu, W.7
Steer, C.J.8
Subramanian, S.9
Cunningham, J.M.10
-
79
-
-
26944495173
-
MicroRNA function in animal development
-
Wienholds E, Plasterk RH. 2005. MicroRNA function in animal development. FEBS Lett 579: 5911-5922.
-
(2005)
FEBS Lett
, vol.579
, pp. 5911-5922
-
-
Wienholds, E.1
Plasterk, R.H.2
-
80
-
-
66049153398
-
Evolution under canalization and the dual roles of microRNAs: A hypothesis
-
Wu CI, Shen Y, Tang T. 2009. Evolution under canalization and the dual roles of microRNAs: A hypothesis. Genome Res 19: 734-743.
-
(2009)
Genome Res
, vol.19
, pp. 734-743
-
-
Wu, C.I.1
Shen, Y.2
Tang, T.3
-
81
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
82
-
-
24644446398
-
Ribo-gnome: The big world of small RNAs
-
Zamore PD, Haley B. 2005. Ribo-gnome: The big world of small RNAs. Science 309: 1519-1524.
-
(2005)
Science
, vol.309
, pp. 1519-1524
-
-
Zamore, P.D.1
Haley, B.2
-
83
-
-
49249114176
-
MicroRNA regulation and the variability of human cortical gene expression
-
Zhang R, Su B. 2008. MicroRNA regulation and the variability of human cortical gene expression. Nucleic Acids Res 36: 4621-4628.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4621-4628
-
-
Zhang, R.1
Su, B.2
-
84
-
-
77950299137
-
Mixed linear model approach adapted for genome-wide association studies
-
Zhang Z, Ersoz E, Lai C-Q, Todhunter RJ, Tiwari HK, Gore MA, Bradbury PJ, Yu J, Arnett DK, Ordovas JM, et al. 2010. Mixed linear model approach adapted for genome-wide association studies. Nat Genet 42: 355-360.
-
(2010)
Nat Genet
, vol.42
, pp. 355-360
-
-
Zhang, Z.1
Ersoz, E.2
Lai, C.-Q.3
Todhunter, R.J.4
Tiwari, H.K.5
Gore, M.A.6
Bradbury, P.J.7
Yu, J.8
Arnett, D.K.9
Ordovas, J.M.10
|