메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

Author keywords

Corynebacterium glutamicum; High throughput sequencing; RNA; Transcriptome

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; RIBOSOME RNA; TRANSCRIPTOME;

EID: 84890290103     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-888     Document Type: Article
Times cited : (154)

References (104)
  • 1
    • 0041429540 scopus 로고    scopus 로고
    • Industrial production of amino acids by coryneform bacteria
    • 10.1016/S0168-1656(03)00149-4, 12948636
    • Hermann T. Industrial production of amino acids by coryneform bacteria. J Biotechnol 2003, 104:155-172. 10.1016/S0168-1656(03)00149-4, 12948636.
    • (2003) J Biotechnol , vol.104 , pp. 155-172
    • Hermann, T.1
  • 2
    • 84856294265 scopus 로고    scopus 로고
    • Corynebacterium glutamicum as a potent biocatalyst for the bioconversion of pentose sugars to value-added products
    • 10.1007/s00253-011-3686-4, 22094976
    • Gopinath V, Murali A, Dhar KS, Nampoothiri KM. Corynebacterium glutamicum as a potent biocatalyst for the bioconversion of pentose sugars to value-added products. Appl Microbiol Biotechnol 2012, 93:95-106. 10.1007/s00253-011-3686-4, 22094976.
    • (2012) Appl Microbiol Biotechnol , vol.93 , pp. 95-106
    • Gopinath, V.1    Murali, A.2    Dhar, K.S.3    Nampoothiri, K.M.4
  • 3
    • 33745143219 scopus 로고    scopus 로고
    • Emerging Corynebacterium glutamicum systems biology
    • 10.1016/j.jbiotec.2005.12.002, 16406159
    • Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W. Emerging Corynebacterium glutamicum systems biology. J Biotechnol 2006, 124:74-92. 10.1016/j.jbiotec.2005.12.002, 16406159.
    • (2006) J Biotechnol , vol.124 , pp. 74-92
    • Wendisch, V.F.1    Bott, M.2    Kalinowski, J.3    Oldiges, M.4    Wiechert, W.5
  • 5
    • 0042162924 scopus 로고    scopus 로고
    • The Corynebacterium glutamicum genome: features and impacts on biotechnological processes
    • 10.1007/s00253-003-1328-1, 12743753
    • Ikeda M, Nakagawa S. The Corynebacterium glutamicum genome: features and impacts on biotechnological processes. Appl Microbiol Biotechnol 2003, 62:99-109. 10.1007/s00253-003-1328-1, 12743753.
    • (2003) Appl Microbiol Biotechnol , vol.62 , pp. 99-109
    • Ikeda, M.1    Nakagawa, S.2
  • 6
    • 34047119637 scopus 로고    scopus 로고
    • The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum
    • 10.1016/j.jbiotec.2006.12.013, 17227685
    • Brinkrolf K, Brune I, Tauch A. The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum. J Biotechnol 2007, 129:191-211. 10.1016/j.jbiotec.2006.12.013, 17227685.
    • (2007) J Biotechnol , vol.129 , pp. 191-211
    • Brinkrolf, K.1    Brune, I.2    Tauch, A.3
  • 7
    • 84862195656 scopus 로고    scopus 로고
    • CoryneRegNet 6.0-Updated database content, new analysis methods and novel features focusing on community demands
    • 10.1093/nar/gkr883, 3245100, 22080556
    • Pauling J, Röttger R, Tauch A, Azevedo V, Baumbach J. CoryneRegNet 6.0-Updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Res 2012, 40:D610-D614. 10.1093/nar/gkr883, 3245100, 22080556.
    • (2012) Nucleic Acids Res , vol.40
    • Pauling, J.1    Röttger, R.2    Tauch, A.3    Azevedo, V.4    Baumbach, J.5
  • 8
    • 79958078463 scopus 로고    scopus 로고
    • Sigma factors and promoters in Corynebacterium glutamicum
    • 10.1016/j.jbiotec.2011.01.017, 21277915
    • Pátek M, Nešvera J. Sigma factors and promoters in Corynebacterium glutamicum. J Biotechnol 2011, 154:101-113. 10.1016/j.jbiotec.2011.01.017, 21277915.
    • (2011) J Biotechnol , vol.154 , pp. 101-113
    • Pátek, M.1    Nešvera, J.2
  • 9
    • 84885530009 scopus 로고    scopus 로고
    • Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032
    • 10.1186/1471-2164-14-714, 24138339
    • Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J. Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics 2013, 14:714. 10.1186/1471-2164-14-714, 24138339.
    • (2013) BMC Genomics , vol.14 , pp. 714
    • Mentz, A.1    Neshat, A.2    Pfeifer-Sancar, K.3    Pühler, A.4    Rückert, C.5    Kalinowski, J.6
  • 10
    • 77953548312 scopus 로고    scopus 로고
    • Prokaryotic whole-transcriptome analysis: deep sequencing and tiling arrays
    • Siezen RJ, Wilson G, Todt T. Prokaryotic whole-transcriptome analysis: deep sequencing and tiling arrays. J Microbial Biotechnol 2010, 3:125-130.
    • (2010) J Microbial Biotechnol , vol.3 , pp. 125-130
    • Siezen, R.J.1    Wilson, G.2    Todt, T.3
  • 11
    • 80955168065 scopus 로고    scopus 로고
    • Application of RNA-seq to reveal the transcript profile in bacteria
    • 10.4238/vol10-3gmr1554, 21863565
    • Pinto AC, Melo-Barbosa HP, Miyoshi A, Silva A, Azevedo V. Application of RNA-seq to reveal the transcript profile in bacteria. Genet Mol Res 2011, 10:1707-1718. 10.4238/vol10-3gmr1554, 21863565.
    • (2011) Genet Mol Res , vol.10 , pp. 1707-1718
    • Pinto, A.C.1    Melo-Barbosa, H.P.2    Miyoshi, A.3    Silva, A.4    Azevedo, V.5
  • 12
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • 10.1038/nrg2484, 2949280, 19015660
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63. 10.1038/nrg2484, 2949280, 19015660.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 13
    • 80051732583 scopus 로고    scopus 로고
    • Bacterial transcriptomics: what is beyond the RNA horiz-ome?
    • 10.1038/nrmicro2620, 21836626
    • Güell M, Yus E, Lluch-Senar M, Serrano L. Bacterial transcriptomics: what is beyond the RNA horiz-ome?. Nat Rev Microbiol 2011, 9:658-669. 10.1038/nrmicro2620, 21836626.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 658-669
    • Güell, M.1    Yus, E.2    Lluch-Senar, M.3    Serrano, L.4
  • 17
    • 84862935255 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83
    • 10.1128/JB.06385-11, 3256594, 22037400
    • Høvik H, Yu W-H, Olsen I, Chen T. Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 2012, 194:100-114. 10.1128/JB.06385-11, 3256594, 22037400.
    • (2012) J Bacteriol , vol.194 , pp. 100-114
    • Høvik, H.1    Yu, W.-H.2    Olsen, I.3    Chen, T.4
  • 18
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • 10.1126/science.1158441, 2951732, 18451266
    • Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349. 10.1126/science.1158441, 2951732, 18451266.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 19
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • 10.1016/j.cell.2008.03.029, 2723732, 18423832
    • Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536. 10.1016/j.cell.2008.03.029, 2723732, 18423832.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1    O'Malley, R.C.2    Tonti-Filippini, J.3    Gregory, B.D.4    Berry, C.C.5    Millar, A.H.6    Ecker, J.R.7
  • 20
    • 84859733293 scopus 로고    scopus 로고
    • Annotation of the transcriptome from Taenia pisiformis and its comparative analysis with three Taeniidae species
    • 10.1371/journal.pone.0032283, 3326008, 22514598
    • Yang D, Fu Y, Wu X, Xie Y, Nie H, Chen L, Nong X, Gu X, Wang S, Peng X, Yan N, Zhang R, Zheng W, Yang G. Annotation of the transcriptome from Taenia pisiformis and its comparative analysis with three Taeniidae species. PLoS ONE 2012, 7:e32283. 10.1371/journal.pone.0032283, 3326008, 22514598.
    • (2012) PLoS ONE , vol.7
    • Yang, D.1    Fu, Y.2    Wu, X.3    Xie, Y.4    Nie, H.5    Chen, L.6    Nong, X.7    Gu, X.8    Wang, S.9    Peng, X.10    Yan, N.11    Zhang, R.12    Zheng, W.13    Yang, G.14
  • 22
    • 72849114230 scopus 로고    scopus 로고
    • Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
    • Sorek R, Cossart P. Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat Rev Genet 2010, 11:9-16.
    • (2010) Nat Rev Genet , vol.11 , pp. 9-16
    • Sorek, R.1    Cossart, P.2
  • 23
    • 78449301921 scopus 로고    scopus 로고
    • Widespread antisense transcription in Escherichia coli
    • 2912661, 20689751
    • Dornenburg JE, Devita AM, Palumbo MJ, Wade JT. Widespread antisense transcription in Escherichia coli. MBio 2010, 1:e00024-10. 2912661, 20689751.
    • (2010) MBio , vol.1
    • Dornenburg, J.E.1    Devita, A.M.2    Palumbo, M.J.3    Wade, J.T.4
  • 24
    • 80052526246 scopus 로고    scopus 로고
    • Genome-wide detection of novel regulatory RNAs in E. coli
    • 10.1101/gr.119370.110, 3166833, 21665928
    • Raghavan R, Groisman EA, Ochman H. Genome-wide detection of novel regulatory RNAs in E. coli. Genome Res 2011, 21:1487-1497. 10.1101/gr.119370.110, 3166833, 21665928.
    • (2011) Genome Res , vol.21 , pp. 1487-1497
    • Raghavan, R.1    Groisman, E.A.2    Ochman, H.3
  • 26
    • 79955017837 scopus 로고    scopus 로고
    • Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics
    • 10.1111/j.1462-2920.2011.02430.x, 21355971
    • Frank S, Klockgether J, Hagendorf P, Geffers R, Schöck U, Pohl T, Davenport CF, Tümmler B. Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics. Environ Microbiol 2011, 13:1309-1326. 10.1111/j.1462-2920.2011.02430.x, 21355971.
    • (2011) Environ Microbiol , vol.13 , pp. 1309-1326
    • Frank, S.1    Klockgether, J.2    Hagendorf, P.3    Geffers, R.4    Schöck, U.5    Pohl, T.6    Davenport, C.F.7    Tümmler, B.8
  • 28
    • 0016610995 scopus 로고
    • Determinant of cistron specificity in bacterial ribosomes
    • 10.1038/254034a0, 803646
    • Shine J, Dalgarno L. Determinant of cistron specificity in bacterial ribosomes. Nature 1975, 254:34-38. 10.1038/254034a0, 803646.
    • (1975) Nature , vol.254 , pp. 34-38
    • Shine, J.1    Dalgarno, L.2
  • 29
    • 0029847554 scopus 로고    scopus 로고
    • Selfish operons: horizontal transfer may drive the evolution of gene clusters
    • 1207444, 8844169
    • Lawrence JG, Roth JR. Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics 1996, 143:1843-1860. 1207444, 8844169.
    • (1996) Genetics , vol.143 , pp. 1843-1860
    • Lawrence, J.G.1    Roth, J.R.2
  • 30
    • 70849118522 scopus 로고    scopus 로고
    • Operons
    • 10.1007/s00018-009-0114-3, 2776167, 19662496
    • Osbourn AE, Field B. Operons. Cell Mol Life Sci 2009, 66:3755-3775. 10.1007/s00018-009-0114-3, 2776167, 19662496.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 3755-3775
    • Osbourn, A.E.1    Field, B.2
  • 35
    • 0014010718 scopus 로고
    • Genetics of the bacterial cell
    • 10.1126/science.152.3728.1470, 5327200
    • Jacob F. Genetics of the bacterial cell. Science 1966, 152:1470-1478. 10.1126/science.152.3728.1470, 5327200.
    • (1966) Science , vol.152 , pp. 1470-1478
    • Jacob, F.1
  • 36
    • 0013997435 scopus 로고
    • Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis
    • 10.1101/SQB.1966.031.01.019, 4966069
    • Szybalski W, Kubinski H, Sheldrick P. Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis. Cold Spring Harb Symp Quant Biol 1966, 31:123-127. 10.1101/SQB.1966.031.01.019, 4966069.
    • (1966) Cold Spring Harb Symp Quant Biol , vol.31 , pp. 123-127
    • Szybalski, W.1    Kubinski, H.2    Sheldrick, P.3
  • 37
    • 0023713630 scopus 로고
    • Promoter selectivity of prokaryotic RNA polymerases
    • 10.1016/0168-9525(88)90170-9, 3076288
    • Ishihama A. Promoter selectivity of prokaryotic RNA polymerases. Trends Genet 1988, 4:282-286. 10.1016/0168-9525(88)90170-9, 3076288.
    • (1988) Trends Genet , vol.4 , pp. 282-286
    • Ishihama, A.1
  • 38
    • 0033765113 scopus 로고    scopus 로고
    • Functional modulation of Escherichia coli RNA polymerase
    • 10.1146/annurev.micro.54.1.499, 11018136
    • Ishihama A. Functional modulation of Escherichia coli RNA polymerase. Annu Rev Microbiol 2000, 54:499-518. 10.1146/annurev.micro.54.1.499, 11018136.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 499-518
    • Ishihama, A.1
  • 39
    • 0037261948 scopus 로고    scopus 로고
    • The sigma70 family of sigma factors
    • 10.1186/gb-2003-4-1-203, 151288, 12540296
    • Paget MSB, Helmann JD. The sigma70 family of sigma factors. Genome Biol 2003, 4:203. 10.1186/gb-2003-4-1-203, 151288, 12540296.
    • (2003) Genome Biol , vol.4 , pp. 203
    • Paget, M.S.B.1    Helmann, J.D.2
  • 40
    • 0343597687 scopus 로고
    • Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter
    • 10.1073/pnas.72.3.784, 432404, 1093168
    • Pribnow D. Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Proc Natl Acad Sci USA 1975, 72:784-788. 10.1073/pnas.72.3.784, 432404, 1093168.
    • (1975) Proc Natl Acad Sci USA , vol.72 , pp. 784-788
    • Pribnow, D.1
  • 41
    • 0017353007 scopus 로고
    • Interaction of RNA polymerase with promoters from bacteriophage fd
    • 10.1111/j.1432-1033.1977.tb11372.x, 300680
    • Seeburg PH, Nüsslein C, Schaller H. Interaction of RNA polymerase with promoters from bacteriophage fd. Eur J Biochem 1977, 74:107-113. 10.1111/j.1432-1033.1977.tb11372.x, 300680.
    • (1977) Eur J Biochem , vol.74 , pp. 107-113
    • Seeburg, P.H.1    Nüsslein, C.2    Schaller, H.3
  • 42
    • 0021111879 scopus 로고
    • Compilation and analysis of Escherichia coli promoter DNA sequences
    • 10.1093/nar/11.8.2237, 325881, 6344016
    • Hawley DK, McClure WR. Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res 1983, 11:2237-2255. 10.1093/nar/11.8.2237, 325881, 6344016.
    • (1983) Nucleic Acids Res , vol.11 , pp. 2237-2255
    • Hawley, D.K.1    McClure, W.R.2
  • 43
    • 4544295425 scopus 로고    scopus 로고
    • Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR
    • 10.1126/science.1102216, 15375261
    • Ao W, Gaudet J, Kent WJ, Muttumu S, Mango SE. Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR. Science 2004, 305:1743-1746. 10.1126/science.1102216, 15375261.
    • (2004) Science , vol.305 , pp. 1743-1746
    • Ao, W.1    Gaudet, J.2    Kent, W.J.3    Muttumu, S.4    Mango, S.E.5
  • 44
    • 0041429496 scopus 로고    scopus 로고
    • Promoters of Corynebacterium glutamicum
    • 10.1016/S0168-1656(03)00155-X, 12948648
    • Pátek M, Nesvera J, Guyonvarch A, Reyes O, Leblon G. Promoters of Corynebacterium glutamicum. J Biotechnol 2003, 104:311-323. 10.1016/S0168-1656(03)00155-X, 12948648.
    • (2003) J Biotechnol , vol.104 , pp. 311-323
    • Pátek, M.1    Nesvera, J.2    Guyonvarch, A.3    Reyes, O.4    Leblon, G.5
  • 45
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • 10.1101/gr.849004, 419797, 15173120
    • Crooks GE, Hon G, Chandonia J-M, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004, 14:1188-1190. 10.1101/gr.849004, 419797, 15173120.
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.-M.3    Brenner, S.E.4
  • 46
    • 84872264114 scopus 로고    scopus 로고
    • ORF finder
    • ORF finder. http://www.gen-info.osaka-u.ac.jp/~uhmin/study/orf/index.cgi.
  • 48
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • 10.1146/annurev.micro.59.030804.121336, 16153177
    • Winkler WC, Breaker RR. Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 2005, 59:487-517. 10.1146/annurev.micro.59.030804.121336, 16153177.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 49
    • 71549126189 scopus 로고    scopus 로고
    • Activation of gene expression by small RNA
    • 10.1016/j.mib.2009.09.009, 19880344
    • Fröhlich KS, Vogel J. Activation of gene expression by small RNA. Curr Opin Microbiol 2009, 12:674-682. 10.1016/j.mib.2009.09.009, 19880344.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 674-682
    • Fröhlich, K.S.1    Vogel, J.2
  • 52
    • 2942560804 scopus 로고    scopus 로고
    • Gene regulation by riboswitches
    • 10.1038/nrm1403, 15173824
    • Mandal M, Breaker RR. Gene regulation by riboswitches. Nat Rev Mol Cell Biol 2004, 5:451-463. 10.1038/nrm1403, 15173824.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 451-463
    • Mandal, M.1    Breaker, R.R.2
  • 53
    • 0346687595 scopus 로고    scopus 로고
    • The riboswitch control of bacterial metabolism
    • 10.1016/j.tibs.2003.11.004, 14729327
    • Nudler E, Mironov AS. The riboswitch control of bacterial metabolism. Trends Biochem Sci 2004, 29:11-17. 10.1016/j.tibs.2003.11.004, 14729327.
    • (2004) Trends Biochem Sci , vol.29 , pp. 11-17
    • Nudler, E.1    Mironov, A.S.2
  • 54
    • 34447499141 scopus 로고    scopus 로고
    • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
    • 10.1186/gb-2007-8-2-r22, 1852404, 17313685
    • Kingsford CL, Ayanbule K, Salzberg SL. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biol 2007, 8:R22. 10.1186/gb-2007-8-2-r22, 1852404, 17313685.
    • (2007) Genome Biol , vol.8
    • Kingsford, C.L.1    Ayanbule, K.2    Salzberg, S.L.3
  • 55
    • 63849342015 scopus 로고    scopus 로고
    • Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
    • 10.1101/gr.088112.108, 2665784, 19181841
    • Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. Genome Res 2009, 19:657-666. 10.1101/gr.088112.108, 2665784, 19181841.
    • (2009) Genome Res , vol.19 , pp. 657-666
    • Hillier, L.W.1    Reinke, V.2    Green, P.3    Hirst, M.4    Marra, M.A.5    Waterston, R.H.6
  • 56
    • 75149149874 scopus 로고    scopus 로고
    • Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs
    • 10.1186/1471-2164-10-641, 2813243, 20042087
    • Oliver HF, Orsi RH, Ponnala L, Keich U, Wang W, Sun Q, Cartinhour SW, Filiatrault MJ, Wiedmann M, Boor KJ. Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. BMC Genomics 2009, 10:641. 10.1186/1471-2164-10-641, 2813243, 20042087.
    • (2009) BMC Genomics , vol.10 , pp. 641
    • Oliver, H.F.1    Orsi, R.H.2    Ponnala, L.3    Keich, U.4    Wang, W.5    Sun, Q.6    Cartinhour, S.W.7    Filiatrault, M.J.8    Wiedmann, M.9    Boor, K.J.10
  • 59
    • 0023644795 scopus 로고
    • Constitutive function of a positively regulated promoter reveals new sequences essential for activity
    • Keilty S, Rosenberg M. Constitutive function of a positively regulated promoter reveals new sequences essential for activity. J Biol Chem 1987, 262:6389-6395.
    • (1987) J Biol Chem , vol.262 , pp. 6389-6395
    • Keilty, S.1    Rosenberg, M.2
  • 60
    • 0039820099 scopus 로고    scopus 로고
    • Eubacterial sigma-factors
    • Wösten MM. Eubacterial sigma-factors. FEMS Microbiol Rev 1998, 22:127-150.
    • (1998) FEMS Microbiol Rev , vol.22 , pp. 127-150
    • Wösten, M.M.1
  • 61
    • 0023492893 scopus 로고
    • Alternative promoters in developmental gene expression
    • 10.1146/annurev.ge.21.120187.001321, 2450521
    • Schibler U, Sierra F. Alternative promoters in developmental gene expression. Annu Rev Genet 1987, 21:237-257. 10.1146/annurev.ge.21.120187.001321, 2450521.
    • (1987) Annu Rev Genet , vol.21 , pp. 237-257
    • Schibler, U.1    Sierra, F.2
  • 62
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • 10.1038/nature01145, 12410317
    • Winkler W, Nahvi A, Breaker RR. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 2002, 419:952-956. 10.1038/nature01145, 12410317.
    • (2002) Nature , vol.419 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 63
    • 0347418195 scopus 로고    scopus 로고
    • Riboswitches: the oldest mechanism for the regulation of gene expression?
    • 10.1016/j.tig.2003.11.008, 14698618
    • Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS. Riboswitches: the oldest mechanism for the regulation of gene expression?. Trends Genet 2004, 20:44-50. 10.1016/j.tig.2003.11.008, 14698618.
    • (2004) Trends Genet , vol.20 , pp. 44-50
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 64
    • 73649123210 scopus 로고    scopus 로고
    • The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA
    • 10.1016/j.molcel.2009.11.033, 20129052
    • Giuliodori AM, Di Pietro F, Marzi S, Masquida B, Wagner R, Romby P, Gualerzi CO, Pon CL. The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Mol Cell 2010, 37:21-33. 10.1016/j.molcel.2009.11.033, 20129052.
    • (2010) Mol Cell , vol.37 , pp. 21-33
    • Giuliodori, A.M.1    Di Pietro, F.2    Marzi, S.3    Masquida, B.4    Wagner, R.5    Romby, P.6    Gualerzi, C.O.7    Pon, C.L.8
  • 65
    • 84887551960 scopus 로고    scopus 로고
    • Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum
    • 10.1111/1751-7915.12055, 23617600
    • Kulis-Horn RK, Persicke M, Kalinowski J. Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum. Microb Biotechnol 2014, 7(1):5-25. 10.1111/1751-7915.12055, 23617600.
    • (2014) Microb Biotechnol , vol.7 , Issue.1 , pp. 5-25
    • Kulis-Horn, R.K.1    Persicke, M.2    Kalinowski, J.3
  • 66
    • 26844492911 scopus 로고    scopus 로고
    • Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria
    • 10.1186/1471-2180-5-54, 1262725, 16202131
    • Seliverstov AV, Putzer H, Gelfand MS, Lyubetsky VA. Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria. BMC Microbiol 2005, 5:54. 10.1186/1471-2180-5-54, 1262725, 16202131.
    • (2005) BMC Microbiol , vol.5 , pp. 54
    • Seliverstov, A.V.1    Putzer, H.2    Gelfand, M.S.3    Lyubetsky, V.A.4
  • 67
    • 57549093995 scopus 로고    scopus 로고
    • Engineering prokaryotic gene circuits
    • 10.1111/j.1574-6976.2008.00139.x, 2704926, 19016883
    • Michalodimitrakis K, Isalan M. Engineering prokaryotic gene circuits. FEMS Microbiol Rev 2009, 33:27-37. 10.1111/j.1574-6976.2008.00139.x, 2704926, 19016883.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 27-37
    • Michalodimitrakis, K.1    Isalan, M.2
  • 68
    • 0026602761 scopus 로고
    • A 5′-terminal stem-loop structure can stabilize mRNA in Escherichia coli
    • 10.1101/gad.6.1.135, 1370426
    • Emory SA, Bouvet P, Belasco JG. A 5′-terminal stem-loop structure can stabilize mRNA in Escherichia coli. Genes Dev 1992, 6:135-148. 10.1101/gad.6.1.135, 1370426.
    • (1992) Genes Dev , vol.6 , pp. 135-148
    • Emory, S.A.1    Bouvet, P.2    Belasco, J.G.3
  • 69
    • 77953884287 scopus 로고    scopus 로고
    • All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay
    • 10.1038/nrm2917, 3145457, 20520623
    • Belasco JG. All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay. Nat Rev Mol Cell Biol 2010, 11:467-478. 10.1038/nrm2917, 3145457, 20520623.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 467-478
    • Belasco, J.G.1
  • 70
    • 0036198887 scopus 로고    scopus 로고
    • Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control
    • 10.1046/j.1365-2958.2002.02739.x, 11849551
    • Moll I, Grill S, Gualerzi CO, Bläsi U. Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control. Mol Microbiol 2002, 43:239-246. 10.1046/j.1365-2958.2002.02739.x, 11849551.
    • (2002) Mol Microbiol , vol.43 , pp. 239-246
    • Moll, I.1    Grill, S.2    Gualerzi, C.O.3    Bläsi, U.4
  • 71
    • 74949137952 scopus 로고    scopus 로고
    • A single-base resolution map of an archaeal transcriptome
    • 10.1101/gr.100396.109, 2798825, 19884261
    • Wurtzel O, Sapra R, Chen F, Zhu Y, Simmons BA, Sorek R. A single-base resolution map of an archaeal transcriptome. Genome Res 2010, 20:133-141. 10.1101/gr.100396.109, 2798825, 19884261.
    • (2010) Genome Res , vol.20 , pp. 133-141
    • Wurtzel, O.1    Sapra, R.2    Chen, F.3    Zhu, Y.4    Simmons, B.A.5    Sorek, R.6
  • 72
    • 80054095416 scopus 로고    scopus 로고
    • Archaeal transcriptional regulation of the prokaryotic KdpFABC complex mediating K(+) uptake in H. salinarum
    • 10.1007/s00792-011-0395-y, 21947979
    • Kixmüller D, Strahl H, Wende A, Greie J-C. Archaeal transcriptional regulation of the prokaryotic KdpFABC complex mediating K(+) uptake in H. salinarum. Extremophiles 2011, 15:643-652. 10.1007/s00792-011-0395-y, 21947979.
    • (2011) Extremophiles , vol.15 , pp. 643-652
    • Kixmüller, D.1    Strahl, H.2    Wende, A.3    Greie, J.-C.4
  • 73
    • 76049099044 scopus 로고    scopus 로고
    • Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability
    • 10.1073/pnas.0909051106, 2799843, 19996181
    • Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. PNAS 2009, 106:21878-21882. 10.1073/pnas.0909051106, 2799843, 19996181.
    • (2009) PNAS , vol.106 , pp. 21878-21882
    • Jäger, D.1    Sharma, C.M.2    Thomsen, J.3    Ehlers, C.4    Vogel, J.5    Schmitz, R.A.6
  • 74
    • 0028983409 scopus 로고
    • Transcription in archaea: similarity to that in eucarya
    • 10.1073/pnas.92.13.5768, 41582, 7597027
    • Langer D, Hain J, Thuriaux P, Zillig W. Transcription in archaea: similarity to that in eucarya. Proc Natl Acad Sci USA 1995, 92:5768-5772. 10.1073/pnas.92.13.5768, 41582, 7597027.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 5768-5772
    • Langer, D.1    Hain, J.2    Thuriaux, P.3    Zillig, W.4
  • 75
    • 52949137901 scopus 로고    scopus 로고
    • Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG
    • 10.1261/rna.1089208, 2553737, 18755843
    • Brock JE, Pourshahian S, Giliberti J, Limbach PA, Janssen GR. Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG. RNA 2008, 14:2159-2169. 10.1261/rna.1089208, 2553737, 18755843.
    • (2008) RNA , vol.14 , pp. 2159-2169
    • Brock, J.E.1    Pourshahian, S.2    Giliberti, J.3    Limbach, P.A.4    Janssen, G.R.5
  • 76
    • 3042690803 scopus 로고    scopus 로고
    • Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs
    • 10.1093/nar/gkh663, 443539, 15215335
    • Moll I, Hirokawa G, Kiel MC, Kaji A, Bläsi U. Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs. Nucleic Acids Res 2004, 32:3354-3363. 10.1093/nar/gkh663, 443539, 15215335.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3354-3363
    • Moll, I.1    Hirokawa, G.2    Kiel, M.C.3    Kaji, A.4    Bläsi, U.5
  • 77
    • 79953721157 scopus 로고    scopus 로고
    • Translation initiation: variations in the mechanism can be anticipated
    • 10.1007/s00018-010-0588-z, 21076851
    • Malys N, McCarthy JEG. Translation initiation: variations in the mechanism can be anticipated. Cell Mol Life Sci 2011, 68:991-1003. 10.1007/s00018-010-0588-z, 21076851.
    • (2011) Cell Mol Life Sci , vol.68 , pp. 991-1003
    • Malys, N.1    McCarthy, J.E.G.2
  • 78
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites
    • 10.1073/pnas.71.4.1342, 388224, 4598299
    • Shine J, Dalgarno L. The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA 1974, 71:1342-1346. 10.1073/pnas.71.4.1342, 388224, 4598299.
    • (1974) Proc Natl Acad Sci USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 79
    • 0026532777 scopus 로고
    • Translation initiation in Escherichia coli: sequences within the ribosome-binding site
    • 10.1111/j.1365-2958.1992.tb01561.x, 1375310
    • Ringquist S, Shinedling S, Barrick D, Green L, Binkley J, Stormo GD, Gold L. Translation initiation in Escherichia coli: sequences within the ribosome-binding site. Mol Microbiol 1992, 6:1219-1229. 10.1111/j.1365-2958.1992.tb01561.x, 1375310.
    • (1992) Mol Microbiol , vol.6 , pp. 1219-1229
    • Ringquist, S.1    Shinedling, S.2    Barrick, D.3    Green, L.4    Binkley, J.5    Stormo, G.D.6    Gold, L.7
  • 80
    • 0028173550 scopus 로고
    • Prokaryotic translation: the interactive pathway leading to initiation
    • 10.1016/0168-9525(94)90057-4, 7809946
    • McCarthy JE, Brimacombe R. Prokaryotic translation: the interactive pathway leading to initiation. Trends Genet 1994, 10:402-407. 10.1016/0168-9525(94)90057-4, 7809946.
    • (1994) Trends Genet , vol.10 , pp. 402-407
    • McCarthy, J.E.1    Brimacombe, R.2
  • 81
    • 0020338594 scopus 로고
    • Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation
    • 553051, 6325162
    • Chapon C. Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation. EMBO J 1982, 1:369-374. 553051, 6325162.
    • (1982) EMBO J , vol.1 , pp. 369-374
    • Chapon, C.1
  • 83
    • 0023886015 scopus 로고
    • Posttranscriptional regulatory mechanisms in Escherichia coli
    • 10.1146/annurev.bi.57.070188.001215, 3052271
    • Gold L. Posttranscriptional regulatory mechanisms in Escherichia coli. Annu Rev Biochem 1988, 57:199-233. 10.1146/annurev.bi.57.070188.001215, 3052271.
    • (1988) Annu Rev Biochem , vol.57 , pp. 199-233
    • Gold, L.1
  • 84
    • 0020480282 scopus 로고
    • Characterization of translational initiation sites in E. coli
    • 10.1093/nar/10.9.2971, 320669, 7048258
    • Stormo GD, Schneider TD, Gold LM. Characterization of translational initiation sites in E. coli. Nucleic Acids Res 1982, 10:2971-2996. 10.1093/nar/10.9.2971, 320669, 7048258.
    • (1982) Nucleic Acids Res , vol.10 , pp. 2971-2996
    • Stormo, G.D.1    Schneider, T.D.2    Gold, L.M.3
  • 85
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • 10.1016/S0022-2836(61)80072-7, 13718526
    • Jacob F, Monod J. Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 1961, 3:318-356. 10.1016/S0022-2836(61)80072-7, 13718526.
    • (1961) J Mol Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 86
    • 77956281182 scopus 로고    scopus 로고
    • Structural and operational complexity of the Geobacter sulfurreducens genome
    • 10.1101/gr.107540.110, 2928509, 20592237
    • Qiu Y, Cho B-K, Park YS, Lovley D, Palsson B, Zengler K. Structural and operational complexity of the Geobacter sulfurreducens genome. Genome Res 2010, 20:1304-1311. 10.1101/gr.107540.110, 2928509, 20592237.
    • (2010) Genome Res , vol.20 , pp. 1304-1311
    • Qiu, Y.1    Cho, B.-K.2    Park, Y.S.3    Lovley, D.4    Palsson, B.5    Zengler, K.6
  • 88
    • 0027297102 scopus 로고
    • Human foamy virus genome possesses an internal, Bel-1-dependent and functional promoter
    • 10.1073/pnas.90.15.7317, 47128, 8394017
    • Löchelt M, Muranyi W, Flügel RM. Human foamy virus genome possesses an internal, Bel-1-dependent and functional promoter. Proc Natl Acad Sci USA 1993, 90:7317-7321. 10.1073/pnas.90.15.7317, 47128, 8394017.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 7317-7321
    • Löchelt, M.1    Muranyi, W.2    Flügel, R.M.3
  • 89
    • 0032555217 scopus 로고    scopus 로고
    • A second major native von Hippel-Lindau gene product, initiated from an internal translation start site, functions as a tumor suppressor
    • 10.1073/pnas.95.15.8817, 21160, 9671762
    • Schoenfeld A, Davidowitz EJ, Burk RD. A second major native von Hippel-Lindau gene product, initiated from an internal translation start site, functions as a tumor suppressor. Proc Natl Acad Sci USA 1998, 95:8817-8822. 10.1073/pnas.95.15.8817, 21160, 9671762.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 8817-8822
    • Schoenfeld, A.1    Davidowitz, E.J.2    Burk, R.D.3
  • 91
    • 78149421813 scopus 로고    scopus 로고
    • Bacterial antisense RNAs: how many are there, and what are they doing?
    • 10.1146/annurev-genet-102209-163523, 3030471, 20707673
    • Thomason MK, Storz G. Bacterial antisense RNAs: how many are there, and what are they doing?. Annu Rev Genet 2010, 44:167-188. 10.1146/annurev-genet-102209-163523, 3030471, 20707673.
    • (2010) Annu Rev Genet , vol.44 , pp. 167-188
    • Thomason, M.K.1    Storz, G.2
  • 92
    • 0029073396 scopus 로고
    • Transcription termination at intrinsic terminators: the role of the RNA hairpin
    • 10.1073/pnas.92.19.8793, 41053, 7568019
    • Wilson KS, von Hippel PH. Transcription termination at intrinsic terminators: the role of the RNA hairpin. Proc Natl Acad Sci U S A 1995, 92:8793-8797. 10.1073/pnas.92.19.8793, 41053, 7568019.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 8793-8797
    • Wilson, K.S.1    von Hippel, P.H.2
  • 93
    • 0033120034 scopus 로고    scopus 로고
    • The Mechanism of Intrinsic Transcription Termination
    • 10.1016/S1097-2765(00)80477-3, 10230402
    • Gusarov I, Nudler E. The Mechanism of Intrinsic Transcription Termination. Molecular Cell 1999, 3:495-504. 10.1016/S1097-2765(00)80477-3, 10230402.
    • (1999) Molecular Cell , vol.3 , pp. 495-504
    • Gusarov, I.1    Nudler, E.2
  • 94
    • 0025663103 scopus 로고
    • Prediction of rho-independent Escherichia coli transcription terminators: A statistical analysis of their RNA stem-loop structures
    • 10.1016/S0022-2836(99)80005-9, 1702475
    • d'Aubenton CY, Brody E, Thermes C. Prediction of rho-independent Escherichia coli transcription terminators: A statistical analysis of their RNA stem-loop structures. J Mol Biol 1990, 216:835-858. 10.1016/S0022-2836(99)80005-9, 1702475.
    • (1990) J Mol Biol , vol.216 , pp. 835-858
    • d'Aubenton, C.Y.1    Brody, E.2    Thermes, C.3
  • 95
    • 0021612444 scopus 로고
    • Removal of a terminator structure by RNA processing regulates int gene expression
    • 10.1016/0022-2836(84)90381-4, 6234400
    • Schmeissner U, McKenney K, Rosenberg M, Court D. Removal of a terminator structure by RNA processing regulates int gene expression. J Mol Biol 1984, 176:39-53. 10.1016/0022-2836(84)90381-4, 6234400.
    • (1984) J Mol Biol , vol.176 , pp. 39-53
    • Schmeissner, U.1    McKenney, K.2    Rosenberg, M.3    Court, D.4
  • 96
    • 0029036249 scopus 로고
    • Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA
    • 10.1093/nar/23.11.1977, 306972, 7596826
    • Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Res 1995, 23:1977-1983. 10.1093/nar/23.11.1977, 306972, 7596826.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1977-1983
    • Schroth, G.P.1    Ho, P.S.2
  • 97
    • 84555196035 scopus 로고    scopus 로고
    • Genome Wide Full-Length Transcript Analysis Using 5′ and 3′ Paired-End-Tag Next Generation Sequencing (RNA-PET)
    • New York: Springer, Vancura A
    • Ruan X, Ruan Y. Genome Wide Full-Length Transcript Analysis Using 5′ and 3′ Paired-End-Tag Next Generation Sequencing (RNA-PET). Transcriptional Regulation 2012, 535-562. New York: Springer, Vancura A.
    • (2012) Transcriptional Regulation , pp. 535-562
    • Ruan, X.1    Ruan, Y.2
  • 98
    • 0027164654 scopus 로고
    • Isoleucine synthesis in Corynebacterium glutamicum: molecular analysis of the ilvB-ilvN-ilvC operon
    • 206616, 8366043
    • Keilhauer C, Eggeling L, Sahm H. Isoleucine synthesis in Corynebacterium glutamicum: molecular analysis of the ilvB-ilvN-ilvC operon. J Bacteriol 1993, 175:5595-5603. 206616, 8366043.
    • (1993) J Bacteriol , vol.175 , pp. 5595-5603
    • Keilhauer, C.1    Eggeling, L.2    Sahm, H.3
  • 99
    • 0345359589 scopus 로고    scopus 로고
    • Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source
    • 10.1016/j.jbiotec.2003.08.006, 14651867
    • Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A. Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. J Biotechnol 2003, 106:269-286. 10.1016/j.jbiotec.2003.08.006, 14651867.
    • (2003) J Biotechnol , vol.106 , pp. 269-286
    • Hüser, A.T.1    Becker, A.2    Brune, I.3    Dondrup, M.4    Kalinowski, J.5    Plassmeier, J.6    Pühler, A.7    Wiegräbe, I.8    Tauch, A.9
  • 100
    • 0020164793 scopus 로고
    • The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction
    • 10.1111/j.1432-1033.1982.tb06730.x, 7117259
    • Romaniuk E, McLaughlin LW, Neilson T, Romaniuk PJ. The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction. Eur J Biochem 1982, 125:639-643. 10.1111/j.1432-1033.1982.tb06730.x, 7117259.
    • (1982) Eur J Biochem , vol.125 , pp. 639-643
    • Romaniuk, E.1    McLaughlin, L.W.2    Neilson, T.3    Romaniuk, P.J.4
  • 101
    • 0030031397 scopus 로고    scopus 로고
    • Determining RNA solution structure by segmental isotopic labeling and NMR: application to Caenorhabditis elegans spliced leader RNA 1
    • 10.1073/pnas.93.1.44, 40175, 8552656
    • Xu J, Lapham J, Crothers DM. Determining RNA solution structure by segmental isotopic labeling and NMR: application to Caenorhabditis elegans spliced leader RNA 1. Proc Natl Acad Sci USA 1996, 93:44-48. 10.1073/pnas.93.1.44, 40175, 8552656.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 44-48
    • Xu, J.1    Lapham, J.2    Crothers, D.M.3
  • 102
    • 0032227473 scopus 로고    scopus 로고
    • Y-ligation: an efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase
    • 10.1023/A:1009644028931, 10729904
    • Nishigaki K, Taguchi K, Kinoshita Y, Aita T, Husimi Y. Y-ligation: an efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase. Mol Divers 1998, 4:187-190. 10.1023/A:1009644028931, 10729904.
    • (1998) Mol Divers , vol.4 , pp. 187-190
    • Nishigaki, K.1    Taguchi, K.2    Kinoshita, Y.3    Aita, T.4    Husimi, Y.5
  • 104
    • 79955767858 scopus 로고    scopus 로고
    • Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
    • 10.1093/bioinformatics/btr151, 21450712
    • Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 2011, 27:1351-1358. 10.1093/bioinformatics/btr151, 21450712.
    • (2011) Bioinformatics , vol.27 , pp. 1351-1358
    • Blom, J.1    Jakobi, T.2    Doppmeier, D.3    Jaenicke, S.4    Kalinowski, J.5    Stoye, J.6    Goesmann, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.