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Volumn 106, Issue 2-3, 2003, Pages 269-286

Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source

Author keywords

2 Methylcitrate cycle; Corynebacterium glutamicum; DNA microarray; Genome sequence; Propionate metabolism

Indexed keywords

AMINO ACIDS; ASSAYS; BACTERIA; DNA; ENZYMES; FLUORESCENCE; GENES; RNA;

EID: 0345359589     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2003.08.006     Document Type: Article
Times cited : (87)

References (34)
  • 1
    • 0036237128 scopus 로고    scopus 로고
    • Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle
    • Claes W.A., Pühler A., Kalinowski J. Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle. J. Bacteriol. 184:2002;2728-2739.
    • (2002) J. Bacteriol. , vol.184 , pp. 2728-2739
    • Claes, W.A.1    Pühler, A.2    Kalinowski, J.3
  • 2
    • 0035315846 scopus 로고    scopus 로고
    • Manufacturing DNA microarrays of high spot homogeneity and reduced background signal
    • Diehl F., Grahlmann S., Beier M., Hoheisel J.D. Manufacturing DNA microarrays of high spot homogeneity and reduced background signal. Nucl. Acids Res. 29:2001;e38.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 38
    • Diehl, F.1    Grahlmann, S.2    Beier, M.3    Hoheisel, J.D.4
  • 4
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit S., Yang Y., Callow M., Speed T. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Stat. Sinica. 12:2002;111-139.
    • (2002) Stat. Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.2    Callow, M.3    Speed, T.4
  • 6
    • 0029785888 scopus 로고    scopus 로고
    • A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins
    • Jäger W., Peters-Wendisch P.G., Kalinowski J., Pühler A. A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins. Arch. Microbiol. 166:1996;76-82.
    • (1996) Arch. Microbiol. , vol.166 , pp. 76-82
    • Jäger, W.1    Peters-Wendisch, P.G.2    Kalinowski, J.3    Pühler, A.4
  • 8
    • 0017400866 scopus 로고
    • Fatty acid synthase from Brevibacterium ammoniagenes: Formation of monounsaturated fatty acids by a multienzyme complex
    • Kawaguchi A., Okuda S. Fatty acid synthase from Brevibacterium ammoniagenes: formation of monounsaturated fatty acids by a multienzyme complex. Proc. Natl. Acad. Sci. U.S.A. 74:1977;3180-3183.
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , pp. 3180-3183
    • Kawaguchi, A.1    Okuda, S.2
  • 9
    • 0027164654 scopus 로고
    • Isoleucine synthesis in Corynebacterium glutamicum: Molecular analysis of the ilvB-ilvN-ilvC operon
    • Keilhauer C., Eggeling L., Sahm H. Isoleucine synthesis in Corynebacterium glutamicum: molecular analysis of the ilvB-ilvN-ilvC operon. J. Bacteriol. 175:1993;5595-5603.
    • (1993) J. Bacteriol. , vol.175 , pp. 5595-5603
    • Keilhauer, C.1    Eggeling, L.2    Sahm, H.3
  • 10
    • 0036965818 scopus 로고    scopus 로고
    • Triggering mechanism of L-glutamate overproduction by DtsR1 in coryneform bacteria
    • Kimura E. Triggering mechanism of L-glutamate overproduction by DtsR1 in coryneform bacteria. J. Biosci. Bioeng. 94:2002;545-551.
    • (2002) J. Biosci. Bioeng. , vol.94 , pp. 545-551
    • Kimura, E.1
  • 11
    • 0030919128 scopus 로고    scopus 로고
    • A dtsR gene-disrupted mutant of Brevibacterium lactofermentum requires fatty acids for growth and efficiently produces L-glutamate in the presence of an excess of biotin
    • Kimura E., Abe C., Kawahara Y., Nakamatsu T., Tokuda H. A dtsR gene-disrupted mutant of Brevibacterium lactofermentum requires fatty acids for growth and efficiently produces L-glutamate in the presence of an excess of biotin. Biochem. Biophys. Res. Commun. 234:1997;157-161.
    • (1997) Biochem. Biophys. Res. Commun. , vol.234 , pp. 157-161
    • Kimura, E.1    Abe, C.2    Kawahara, Y.3    Nakamatsu, T.4    Tokuda, H.5
  • 12
    • 0025637263 scopus 로고
    • Uptake of glutamate in Corynebacterium glutamicum. 1. Kinetic properties and regulation by internal pH and potassium
    • Krämer R., Lambert C., Hoischen C., Ebbighausen H. Uptake of glutamate in Corynebacterium glutamicum. 1. Kinetic properties and regulation by internal pH and potassium. Eur. J. Biochem. 194:1990;929-935.
    • (1990) Eur. J. Biochem. , vol.194 , pp. 929-935
    • Krämer, R.1    Lambert, C.2    Hoischen, C.3    Ebbighausen, H.4
  • 13
    • 0028944577 scopus 로고
    • Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum
    • Kronemeyer W., Peekhaus N., Krämer R., Sahm H., Eggeling L. Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum. J. Bacteriol. 177:1995;1152-1158.
    • (1995) J. Bacteriol. , vol.177 , pp. 1152-1158
    • Kronemeyer, W.1    Peekhaus, N.2    Krämer, R.3    Sahm, H.4    Eggeling, L.5
  • 14
    • 84978701453 scopus 로고    scopus 로고
    • Amino acids - Technichal production and use
    • Rehm, H.-J., Reed, G., Pühler, A., Stadler, P. (Eds.). VCH, Weinheim, Germany
    • Leuchtenberger, W., 1996. Amino acids - technichal production and use. In: Rehm, H.-J., Reed, G., Pühler, A., Stadler, P. (Eds.), Biotechnology, vol. 6. VCH, Weinheim, Germany, pp. 465-502.
    • (1996) Biotechnology , vol.6 , pp. 465-502
    • Leuchtenberger, W.1
  • 17
    • 0037174294 scopus 로고    scopus 로고
    • Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose
    • Muffler A., Bettermann S., Haushalter M., Hörlein A., Neveling U., Schramm M., Sorgenfrei O. Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose. J. Biotechnol. 98:2002;255-268.
    • (2002) J. Biotechnol. , vol.98 , pp. 255-268
    • Muffler, A.1    Bettermann, S.2    Haushalter, M.3    Hörlein, A.4    Neveling, U.5    Schramm, M.6    Sorgenfrei, O.7
  • 18
    • 0036161274 scopus 로고    scopus 로고
    • A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant
    • Ohnishi J., Mitsuhashi S., Hayashi M., Ando S., Yokoi H., Ochiai K., Ikeda M. A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant. Appl. Microbiol. Biotechnol. 58:2002;217-223.
    • (2002) Appl. Microbiol. Biotechnol. , vol.58 , pp. 217-223
    • Ohnishi, J.1    Mitsuhashi, S.2    Hayashi, M.3    Ando, S.4    Yokoi, H.5    Ochiai, K.6    Ikeda, M.7
  • 19
    • 0030852236 scopus 로고    scopus 로고
    • Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes
    • Peter H., Bader A., Burkovski A., Lambert C., Krämer R. Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes. Arch. Microbiol. 168:1997;143-151.
    • (1997) Arch. Microbiol. , vol.168 , pp. 143-151
    • Peter, H.1    Bader, A.2    Burkovski, A.3    Lambert, C.4    Krämer, R.5
  • 20
    • 0031967783 scopus 로고    scopus 로고
    • Pyruvate carboxylase from Corynebacterium glutamicum: Characterization, expression and inactivation of the pyc gene
    • Peters-Wendisch P.G., Kreutzer C., Kalinowski J., Patek M., Sahm H., Eikmanns B.J. Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology. 144:1998;915-927.
    • (1998) Microbiology , vol.144 , pp. 915-927
    • Peters-Wendisch, P.G.1    Kreutzer, C.2    Kalinowski, J.3    Patek, M.4    Sahm, H.5    Eikmanns, B.J.6
  • 21
    • 0032995716 scopus 로고    scopus 로고
    • Cloning, sequence analysis, expression and inactivation of the Corynebacterium glutamicum pta-ack operon encoding phosphotransacetylase and acetate kinase
    • Reinscheid D.J., Schnicke S., Rittmann D., Zahnow U., Sahm H., Eikmanns B.J. Cloning, sequence analysis, expression and inactivation of the Corynebacterium glutamicum pta-ack operon encoding phosphotransacetylase and acetate kinase. Microbiology. 145:1999;503-513.
    • (1999) Microbiology , vol.145 , pp. 503-513
    • Reinscheid, D.J.1    Schnicke, S.2    Rittmann, D.3    Zahnow, U.4    Sahm, H.5    Eikmanns, B.J.6
  • 23
    • 0036061941 scopus 로고    scopus 로고
    • Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity
    • Roe A.J., O'Byrne C., McLaggan D., Booth I.R. Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity. Microbiology. 148:2002;2215-2222.
    • (2002) Microbiology , vol.148 , pp. 2215-2222
    • Roe, A.J.1    O'byrne, C.2    Mclaggan, D.3    Booth, I.R.4
  • 24
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Meth. Mol. Biol. 132:2000;365-386.
    • (2000) Meth. Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 25
    • 0041387671 scopus 로고    scopus 로고
    • Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation
    • Rückert C., Pühler A., Kalinowski J. Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. J. Biotechnol. 104:2003;213-218.
    • (2003) J. Biotechnol. , vol.104 , pp. 213-218
    • Rückert, C.1    Pühler, A.2    Kalinowski, J.3
  • 27
    • 0029743606 scopus 로고    scopus 로고
    • Identification and functional differentiation of two type I fatty acid synthases in Brevibacterium ammoniagenes
    • Stuible H.-P., Wagner C., Andreou I., Huter G., Haselmann J., Schweizer E. Identification and functional differentiation of two type I fatty acid synthases in Brevibacterium ammoniagenes. J. Bacteriol. 178:1996;4787-4793.
    • (1996) J. Bacteriol. , vol.178 , pp. 4787-4793
    • Stuible, H.-P.1    Wagner, C.2    Andreou, I.3    Huter, G.4    Haselmann, J.5    Schweizer, E.6
  • 28
    • 0032693327 scopus 로고    scopus 로고
    • Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
    • Tao H., Bausch C., Richmond C., Blattner F.R., Conway T. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J. Bacteriol. 181:1999;6425-6440.
    • (1999) J. Bacteriol. , vol.181 , pp. 6425-6440
    • Tao, H.1    Bausch, C.2    Richmond, C.3    Blattner, F.R.4    Conway, T.5
  • 30
    • 0036835575 scopus 로고    scopus 로고
    • Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1
    • Tauch A., Kirchner O., Löffler B., Götker S., Pühler A., Kalinowski J. Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. Curr. Microbiol. 45:2002;362-367.
    • (2002) Curr. Microbiol. , vol.45 , pp. 362-367
    • Tauch, A.1    Kirchner, O.2    Löffler, B.3    Götker, S.4    Pühler, A.5    Kalinowski, J.6
  • 33
    • 0034115397 scopus 로고    scopus 로고
    • Quantitative determination of metabolic fluxes during coutilization of two carbon sources: Comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose
    • Wendisch V.F., de Graaf A.A., Sahm H., Eikmanns B.J. Quantitative determination of metabolic fluxes during coutilization of two carbon sources: comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose. J. Bacteriol. 182:2000;3088-3096.
    • (2000) J. Bacteriol. , vol.182 , pp. 3088-3096
    • Wendisch, V.F.1    De Graaf, A.A.2    Sahm, H.3    Eikmanns, B.J.4
  • 34
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., Speed T.P. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucl. Acids Res. 30:2002;e15.
    • (2002) Nucl. Acids Res. , vol.30 , pp. 15
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.