Sigma factors and promoters in Corynebacterium glutamicum

Journal of Biotechnology

Volumn 154, Issue 2-3, 2011, Pages 101-113

  Pátek, Miroslav ^a   Nešvera, Jan ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

Corynebacterium glutamicum; Promoters; Sigma factors; Transcription regulation network

Indexed keywords

CELL SURFACES; CONSENSUS SEQUENCE; CONTROL MECHANISM; CORYNEBACTERIUM GLUTAMICUM; CORYNEBACTERIUM GLUTAMICUM GENOMES; EXTERNAL SIGNALS; GENE TRANSCRIPTIONS; GROWTH PHASIS; HEAT SHOCK RESPONSE; HOUSEKEEPING GENE; LARGE GROUPS; PHYSIOLOGICAL CONDITION; PROMOTERS; RNA POLYMERASE; SIGMA FACTOR; STRESS CONDITION; STRESS FACTORS; TRANSCRIPTION REGULATION NETWORK; TRANSITION PHASE;

CELL MEMBRANES; GENES; RNA;

TRANSCRIPTION;

RNA POLYMERASE; SIGMA FACTOR; SIGMA FACTOR A; SIGMA FACTOR B; SIGMA FACTOR C; SIGMA FACTOR D; SIGMA FACTOR E; SIGMA FACTOR H; SIGMA FACTOR M; UNCLASSIFIED DRUG;

BACTERIAL GENE; BACTERIAL GROWTH; CELL DAMAGE; CELL FUNCTION; CELL SURFACE; CONSENSUS SEQUENCE; CORYNEBACTERIUM GLUTAMICUM; DNA SEQUENCE; GENE EXPRESSION; GENETIC TRANSCRIPTION; HEAT SHOCK RESPONSE; HOUSEKEEPING GENE; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; REGULON; REVIEW; TRANSCRIPTION REGULATION;

AMINO ACID SEQUENCE; BASE SEQUENCE; CORYNEBACTERIUM GLUTAMICUM; DNA-DIRECTED RNA POLYMERASES; GENE EXPRESSION REGULATION, BACTERIAL; GENE REGULATORY NETWORKS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; REGULON; SIGMA FACTOR; STRESS, PHYSIOLOGICAL;

CORYNEBACTERIUM GLUTAMICUM; SIGE;

EID: 79958078463     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2011.01.017     Document Type: Review

References (105)

1. Agarwal N., Woolwine S.C., Tyagi S., Bishai W.R. Characterization of the Mycobacterium tuberculosis sigma factor SigM by assessment of virulence and identification of SigM-dependent genes. Infect. Immun. 2007, 75:452-461.
2. Arndt A., Eikmanns B.J. The alcohol dehydrogenase gene adhA in Corynebacterium glutamicum is subject to carbon catabolite repression. J. Bacteriol. 2007, 189:7408-7416.
3. Asakura Y., Kimura E., Usuda Y., Kawahara Y., Matsui K., Osumi T., Nakamatsu T. Altered metabolic flux due to deletion of odhA causes l-glutamate overproduction in Corynebacterium glutamicum. Appl. Environ. Microbiol. 2007, 73:1308-1319.
4. Auchter M., Arndt A., Eikmanns B.J. Dual transcriptional control of the acetaldehyde dehydrogenase gene ald of Corynebacterium glutamicum by RamA and RamB. J. Biotechnol. 2009, 140:84-91.
5. Barreiro C., González-Lavado E., Pátek M., Martín J.F. Transcriptional analysis of the groES-groEL1, groEL2, and dnaK genes in Corynebacterium glutamicum: characterization of heat shock-induced promoters. J. Bacteriol. 2004, 186:4813-4817.
6. Barreiro C., Nakunst D., Hüser A.T., de Paz H.D., Kalinowski J., Martín J.F. Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum. Microbiology 2009, 155:359-372.
7. Becker G., Hengge-Aronis R. What makes an Escherichia coli promoter σS dependent?. Role of the -13/-14 nucleotide promoter positions and region 2.5 of σS. Mol. Microbiol. 2001, 39:1153-1165.
8. Beckers G., Nolden L., Burkovski A. Glutamate synthase of Corynebacterium glutamicum is not essential for glutamate synthesis and is regulated by the nitrogen status. Microbiology 2001, 147:2961-2970.
9. Bellmann A., Vrljic M., Pátek M., Sahm H., Krämer R., Eggeling L. Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum. Microbiology 2001, 147:1765-1774.
10. Börmann E.R., Eikmanns B.J., Sahm H. Molecular analysis of the Corynebacterium glutamicum gdh gene encoding glutamate dehydrogenase. Mol. Microbiol. 1992, 6:317-326.
11. Brinkrolf K., Ploger S., Solle S., Brune I., Nentwich S.S., Hüser A.T., Kalinowski J., Pühler A., Tauch A. The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. Microbiology 2008, 154:1068-1081.
12. Brocker M., Schäffer S., Mack C., Bott M. Citrate utilization by Corynebacterium glutamicum is controlled by the CitAB two-component system through positive regulation of the citrate transport genes citH and tctCBA. J. Bacteriol. 2009, 191:3869-3880.
13. Brockmann-Gretza O., Kalinowski J. Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase. BMC Genom. 2006, 7:230.
14. Brune I., Werner H., Hüser A.T., Kalinowski J., Pühler A., Tauch A. The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genom. 2006, 7:21.
15. Brune I., Jochmann N., Brinkrolf K., Hüser A.T., Gerstmeir R., Eikmanns B.J., Kalinowski J., Pühler A., Tauch A. The IclR-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. J. Bacteriol. 2007, 189:2720-2733.
16. Burr T., Mitchell J., Kolb A., Minchin S., Busby S. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res. 2000, 28:1864-1870.
17. Choi W.W., Park S.D., Lee S.M., Kim H.B., Kim Y., Lee H.S. The whcA gene plays a negative role in oxidative stress response of Corynebacterium glutamicum. FEMS Microbiol. Lett. 2009, 290:32-38.
18. Cramer A., Eikmanns B.J. RamA, the transcriptional regulator of acetate metabolism in Corynebacterium glutamicum, is subject to negative autoregulation. J. Mol. Microbiol. Biotechnol. 2007, 12:51-59.
19. Cramer A., Auchter M., Frunzke J., Bott M., Eikmanns B.J. RamB, the transcriptional regulator of acetate metabolism in Corynebacterium glutamicum, is subject to regulation by RamA and RamB. J. Bacteriol. 2007, 189:1145-1149.
20. Ehira S., Shirai T., Teramoto H., Inui M., Yukawa H. Group 2 sigma factor SigB of Corynebacterium glutamicum positively regulates glucose metabolism under conditions of oxygen deprivation. Appl. Environ. Microbiol. 2008, 74:5146-5152.
21. Ehira S., Teramoto H., Inui M., Yukawa H. Regulation of Corynebacterium glutamicum heat shock response by the extracytoplasmic-function sigma factor SigH and transcriptional regulators HspR and HrcA. J. Bacteriol. 2009, 191:2964-2972.
22. Eikmanns B.J., Thum-Schmitz N., Eggeling L., Ludtke K.U., Sahm H. Nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase. Microbiology 1994, 140:1817-1828.
23. Engels V., Wendisch V.F. The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum. J. Bacteriol. 2007, 189:2955-2966.
24. Engels S., Schweitzer J.E., Ludwig C., Bott M., Schäffer S. clpC and clpP1P2 gene expression in Corynebacterium glutamicum is controlled by a regulatory network involving the transcriptional regulators ClgR and HspR as well as the ECF sigma factor σH. Mol. Microbiol. 2004, 52:285-302.
25. Engels V., Georgi T., Wendisch V.F. ScrB (Cg2927) is a sucrose-6-phosphate hydrolase essential for sucrose utilization by Corynebacterium glutamicum. FEMS Microbiol. Lett. 2008, 289:80-89.
26. Follettie M.T., Peoples O.P., Agoropoulou C., Sinskey A.J. Gene structure and expression of the Corynebacterium flavum N13 ask-asd operon. J. Bacteriol. 1993, 175:4096-4103.
27. Frunzke J., Engels V., Hasenbein S., Gatgens C., Bott M. Co-ordinated regulation of gluconate catabolism and glucose uptake in Corynebacterium glutamicum by two functionally equivalent transcriptional regulators, GntR1 and GntR2. Mol. Microbiol. 2008, 67:305-322.
28. Gaigalat L., Schlüter J.P., Hartmann M., Mormann S., Tauch A., Pühler A., Kalinowski J. The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Mol. Biol. 2007, 8:104.
29. Georgi T., Engels V., Wendisch V.F. Regulation of l-lactate utilization by the FadR-type regulator LldR of Corynebacterium glutamicum. J. Bacteriol. 2008, 190:963-971.
30. Gerstmeir R., Wendisch V.F., Schnicke S., Ruan H., Farwick M., Reinscheid D., Eikmanns B.J. Acetate metabolism and its regulation in Corynebacterium glutamicum. J. Biotechnol. 2003, 104:99-122.
31. Gruber T.M., Gross C.A. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol. 2003, 57:441-466.
32. Halgasova N., Bukovska G., Timko J., Kormanec J. Cloning and transcriptional characterization of two sigma factor genes, sigA and sigB, from Brevibacterium flavum. Curr. Microbiol. 2001, 43:249-254.
33. Halgasova N., Bukovska G., Ugorcakova J., Timko J., Kormanec J. The Brevibacterium flavum sigma factor SigB has a role in the environmental stress response. FEMS Microbiol. Lett. 2002, 216:77-84.
34. Han K.S., Archer J.A., Sinskey A.J. The molecular structure of the Corynebacterium glutamicum threonine synthase gene. Mol. Microbiol. 1990, 4:1693-1702.
35. Han S.O., Inui M., Yukawa H. Expression of Corynebacterium glutamicum glycolytic genes varies with carbon source and growth phase. Microbiology 2007, 153:2190-2202.
36. Han S.O., Inui M., Yukawa H. Effect of carbon source availability and growth phase on expression of Corynebacterium glutamicum genes involved in the tricarboxylic acid cycle and glyoxylate bypass. Microbiology 2008, 154:3073-3083.
37. Hansmeier N., Albersmeier A., Tauch A., Damberg T., Ros R., Anselmetti D., Pühler A., Kalinowski J. The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6kb genomic island absent from the type strain ATCC 13032. Microbiology 2006, 152:923-935.
38. Hänssler E., Müller T., Palumbo K., Pátek M., Brocker M., Krämer R., Burkovski A. A game with many players: control of gdh transcription in Corynebacterium glutamicum. J. Biotechnol. 2009, 142:114-122.
39. Holátko J., Elišáková V., Prouza M., Sobotka M., Nešvera J., Pátek M. Metabolic engineering of the l-valine biosynthesis pathway in Corynebacterium glutamicum using promoter activity modulation. J. Biotechnol. 2009, 139:203-210.
40. Ikeda M., Baba M., Tsukamoto N., Komatsu T., Mitsuhashi S., Takeno S. Elucidation of genes relevant to the microaerobic growth of Corynebacterium glutamicum. Biosci. Biotechnol. Biochem. 2009, 73:2806-2808.
41. Inui M., Suda M., Okino S., Nonaka H., Puskas L.G., Vertes A.A., Yukawa H. Transcriptional profiling of Corynebacterium glutamicum metabolism during organic acid production under oxygen deprivation conditions. Microbiology 2007, 153:2491-2504.
42. Jakob K., Satorhelyi P., Lange C., Wendisch V.F., Silakowski B., Scherer S., Neuhaus K. Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation. J. Bacteriol. 2007, 189:5582-5590.
43. Jakoby M., Nolden L., Meier-Wagner J., Krämer R., Burkovski A. AmtR, a global repressor in the nitrogen regulation system of Corynebacterium glutamicum. Mol. Microbiol. 2000, 37:964-977.
44. Jochmann N., Kurze A.K., Czaja L.F., Brinkrolf K., Brune I., Hüser A.T., Hansmeier N., Pühler A., Borovok I., Tauch A. Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays. Microbiology 2009, 155:1459-1477.
45. Jungwirth B., Emer D., Brune I., Hansmeier N., Pühler A., Eikmanns B.J., Tauch A. Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR. FEMS Microbiol. Lett. 2008, 281:190-197.
46. Kang J.G., Paget M.S., Seok Y.J., Hahn M.Y., Bae J.B., Hahn J.S., Kleanthous C., Buttner M.J., Roe J.H. RsrA, an anti-sigma factor regulated by redox change. EMBO J. 1999, 18:4292-4298.
47. Kennerknecht N., Sahm H., Yen M.R., Pátek M., Saier M.H., Eggeling L. Export of l-isoleucine from Corynebacterium glutamicum: a two-gene-encoded member of a new translocator family. J. Bacteriol. 2002, 184:3947-3956.
48. Kim T.H., Kim H.J., Park J.S., Kim Y., Kim P., Lee H.S. Functional analysis of sigH expression in Corynebacterium glutamicum. Biochem. Biophys. Res. Commun. 2005, 331:1542-1547.
49. Klaffl S., Eikmanns B.J. Genetic and functional analysis of the soluble oxaloacetate decarboxylase from Corynebacterium glutamicum. J. Bacteriol. 2010, 192:2604-2612.
50. Kočan M., Schäffer S., Ishige T., Sorger-Herrmann U., Wendisch V.F., Bott M. Two-component systems of Corynebacterium glutamicum: deletion analysis and involvement of the PhoS-PhoR system in the phosphate starvation response. J. Bacteriol. 2006, 188:724-732.
51. Koch D.J., Rückert C., Albersmeier A., Hüser A.T., Tauch A., Pühler A., Kalinowski J. The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol. Microbiol. 2005, 58:480-494.
52. Krug A., Wendisch V.F., Bott M. Identification of AcnR, a TetR-type repressor of the aconitase gene acn in Corynebacterium glutamicum. J. Biol. Chem. 2005, 280:585-595.
53. Larisch C., Nakunst D., Hüser A.T., Tauch A., Kalinowski J. The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase. BMC Genom. 2007, 8:4.
54. Letek M., Ordonez E., Fiuza M., Honrubia-Marcos P., Vaquera J., Gil J.A., Castro D., Mateos L.M. Characterization of the promoter region of ftsZ from Corynebacterium glutamicum and controlled overexpression of FtsZ. Int. Microbiol. 2007, 10:271-282.
55. Manganelli R., Voskuil M.I., Schoolnik G.K., Dubnau E., Gomez M., Smith I. Role of the extracytoplasmic-function σ factor σH in Mycobacterium tuberculosis global gene expression. Mol. Microbiol. 2002, 45:365-374.
56. Marcel T., Archer J.A., Mengin-Lecreulx D., Sinskey A.J. Nucleotide sequence and organization of the upstream region of the Corynebacterium glutamicum lysA gene. Mol. Microbiol. 1990, 4:1819-1830.
57. Mateos L.M., Pisabarro A., Pátek M., Malumbres M., Guerrero C., Eikmanns B.J., Sahm H., Martin J.F. Transcriptional analysis and regulatory signals of the hom-thrB cluster of Brevibacterium lactofermentum. J. Bacteriol. 1994, 176:7362-7371.
58. Merkens H., Beckers G., Wirtz A., Burkovski A. Vanillate metabolism in Corynebacterium glutamicum. Curr. Microbiol. 2005, 51:59-65.
59. Möker N., Brocker M., Schäffer S., Krämer R., Morbach S., Bott M. Deletion of the genes encoding the MtrA-MtrB two-component system of Corynebacterium glutamicum has a strong influence on cell morphology, antibiotics susceptibility and expression of genes involved in osmoprotection. Mol. Microbiol. 2004, 54:420-438.
60. Morbach S., Jünger C., Sahm H., Eggeling L. Attenuation control of ilvBNC in Corynebacterium glutamicum: evidence of leader peptide formation without the presence of a ribosome binding site. J. Biosci. Bioeng. 2000, 90:501-507.
61. Nakunst D., Larisch C., Hüser A.T., Tauch A., Pühler A., Kalinowski J. The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. J. Bacteriol. 2007, 189:4696-4707.
62. Nentwich S.S., Brinkrolf K., Gaigalat L., Hüser A.T., Rey D.A., Mohrbach T., Marin K., Pühler A., Tauch A., Kalinowski J. Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. Microbiology 2009, 155:150-164.
63. Nešvera J., Pátek M. Plasmids and promoters in corynebacteria and their applications. Corynebacteria: Genomics and Molecular Biology 2008, 113-154. Caister Academic Press, Norfolk, UK. A. Burkovski (Ed.).
64. Nishimura T., Vertes A.A., Shinoda Y., Inui M., Yukawa H. Anaerobic growth of Corynebacterium glutamicum using nitrate as a terminal electron acceptor. Appl. Microbiol. Biotechnol. 2007, 75:889-897.
65. Nolden L., Farwick M., Krämer R., Burkovski A. Glutamine synthetases of Corynebacterium glutamicum: transcriptional control and regulation of activity. FEMS Microbiol. Lett. 2001, 201:91-98.
66. Nonaka G., Blankschien M., Herman C., Gross C.A., Rhodius V.A. Regulon and promoter analysis of the E. coli heat-shock factor σ32, reveals a multifaceted cellular response to heat stress. Genes Dev. 2006, 20:1776-1789.
67. Oguiza J.A., Marcos A.T., Martín J.F. Transcriptional analysis of the sigA and sigB genes of Brevibacterium lactofermentum. FEMS Microbiol. Lett. 1997, 153:111-117.
68. Okibe N., Suzuki N., Inui M., Yukawa H. Isolation, evaluation and use of two strong, carbon source-inducible promoters from Corynebacterium glutamicum. Lett. Appl. Microbiol. 2009, 50:173-180.
69. Olvera L., Mendoza-Vargas A., Flores N., Olvera M., Sigala J.C., Gosset G., Morett E., Bolivar F. Transcription analysis of central metabolism genes in Escherichia coli Possible roles of σ38 in their expression, as a response to carbon limitation. PLoS One 2009, 4:e7466.
70. Paget M.S., Molle V., Cohen G., Aharonowitz Y., Buttner M.J. Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the σR regulon. Mol. Microbiol. 2001, 42:1007-1020.
71. Park S.D., Youn J.W., Kim Y.J., Lee S.M., Kim Y., Lee H.S. Corynebacterium glutamicum σE is involved in responses to cell surface stresses and its activity is controlled by the anti-σ factor CseE. Microbiology 2008, 154:915-923.
72. Pátek M., Eikmanns B.J., Pátek J., Sahm H. Promoters from Corynebacterium glutamicum: cloning, molecular analysis and search for a consensus motif. Microbiology 1996, 142:1297-1309.
73. Pátek M., Hochmannová J., Jelínková M., Nešvera J., Eggeling L. Analysis of the leuB gene from Corynebacterium glutamicum. Appl. Microbiol. Biotechnol. 1998, 50:42-47.
74. Pátek M., Muth G., Wohlleben W. Function of Corynebacterium glutamicum promoters in Escherichia coli, Streptomyces lividans, and Bacillus subtilis. J. Biotechnol. 2003, 104:325-334.
75. Pátek M., Nešvera J., Guyonvarch A., Reyes O., Leblon G. Promoters of Corynebacterium glutamicum. J. Biotechnol. 2003, 104:311-323.
76. Peoples O.P., Liebl W., Bodis M., Maeng P.J., Follettie M.T., Archer J.A., Sinskey A.J. Nucleotide sequence and fine structural analysis of the Corynebacterium glutamicum hom-thrB operon. Mol. Microbiol. 1988, 2:63-72.
77. Peters-Wendisch P.G., Kreutzer C., Kalinowski J., Pátek M., Sahm H., Eikmanns B.J. Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology 1998, 144:915-927.
78. Qiu J., Helmann J.D. The -10 region is a key promoter specificity determinant for the Bacillus subtilis extracytoplasmic-function σ factors σX and σW. J. Bacteriol. 2001, 183:1921-1927.
79. Raman S., Song T., Puyang X., Bardarov S., Jacobs W.R., Husson R.N. The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis. J. Bacteriol. 2001, 183:6119-6125.
80. Raman S., Puyang X., Cheng T.Y., Young D.C., Moody D.B., Husson R.N. Mycobacterium tuberculosis SigM positively regulates Esx secreted protein and nonribosomal peptide synthetase genes and down regulates virulence-associated surface lipid synthesis. J. Bacteriol. 2006, 188:8460-8468.
81. Rodrigue S., Provvedi R., Jacques P.E., Gaudreau L., Manganelli R. The σ factors of Mycobacterium tuberculosis. FEMS Microbiol. Rev. 2006, 30:926-941.
82. Ross W., Ernst A., Gourse R.L. Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove. Genes Dev. 2001, 15:491-506.
83. Rückert C., Koch D.J., Rey D.A., Albersmeier A., Mormann S., Pühler A., Kalinowski J. Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genom. 2005, 6:121.
84. Rückert C., Milse J., Albersmeier A., Koch D.J., Pühler A., Kalinowski J. The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC Genom. 2008, 9:483.
85. Sachdeva P., Misra R., Tyagi A.K., Singh Y. The sigma factors of Mycobacterium tuberculosis: regulation of the regulators. FEBS J. 2010, 277:605-626.
86. Schreiner M.E., Fiur D., Holátko J., Pátek M., Eikmanns B.J. E1 enzyme of the pyruvate dehydrogenase complex in Corynebacterium glutamicum: molecular analysis of the gene and phylogenetic aspects. J. Bacteriol. 2005, 187:6005-6018.
87. Schreiner M.E., Riedel C., Holátko J., Pátek M., Eikmanns B.J. Pyruvate:quinone oxidoreductase in Corynebacterium glutamicum: molecular analysis of the pqo gene, significance of the enzyme, and phylogenetic aspects. J. Bacteriol. 2006, 188:1341-1350.
88. Schröder J., Tauch A. Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network. FEMS Microbiol. Rev. 2010, 34:685-737.
89. Schweitzer J.E., Stolz M., Diesveld R., Etterich H., Eggeling L. The serine hydroxymethyltransferase gene glyA in Corynebacterium glutamicum is controlled by GlyR. J. Biotechnol. 2009, 139:214-221.
90. Schwinde J.W., Thum-Schmitz N., Eikmanns B.J., Sahm H. Transcriptional analysis of the gap-pgk-tpi-ppc gene cluster of Corynebacterium glutamicum. J. Bacteriol. 1993, 175:3905-3908.
91. Schwinde J.W., Hertz P.F., Sahm H., Eikmanns B.J., Guyonvarch A. Lipoamide dehydrogenase from Corynebacterium glutamicum: molecular and physiological analysis of the lpd gene and characterization of the enzyme. Microbiology 2001, 147:2223-2231.
92. Seibold G.M., Hagmann C.T., Schietzel M., Emer D., Auchter M., Schreiner J., Eikmanns B.J. The transcriptional regulators RamA and RamB are involved in the regulation of glycogen synthesis in Corynebacterium glutamicum. Microbiology 2010, 156:1256-1263.
93. Sharma U.K., Chatterji D. Transcriptional switching in Escherichia coli during stress and starvation by modulation of σ70 activity. FEMS Microbiol. Rev. 2010, 34:646-657.
94. Silberbach M., Hüser A., Kalinowski J., Pühler A., Walter B., Kramer R., Burkovski A. DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. J. Biotechnol. 2005, 119:357-367.
95. Simic P., Sahm H., Eggeling L. l-threonine export: use of peptides to identify a new translocator from Corynebacterium glutamicum. J. Bacteriol. 2001, 183:5317-5324.
96. Song T., Dove S.L., Lee K.H., Husson R.N. RshA, an anti-sigma factor that regulates the activity of the mycobacterial stress response sigma factor SigH. Mol. Microbiol. 2003, 50:949-959.
97. Suda M., Teramoto H., Imamiya T., Inui M., Yukawa H. Transcriptional regulation of Corynebacterium glutamicum methionine biosynthesis genes in response to methionine supplementation under oxygen deprivation. Appl. Microbiol. Biotechnol. 2008, 81:505-513.
98. Tanaka Y., Okai N., Teramoto H., Inui M., Yukawa H. Regulation of the expression of phosphoenolpyruvate: carbohydrate phosphotransferase system (PTS) genes in Corynebacterium glutamicum R. Microbiology 2008, 154:264-274.
99. van Ooyen J., Emer D., Bussmann M., Bott M., Eikmanns B.J., Eggeling L. Citrate synthase in Corynebacterium glutamicum is encoded by two gltA transcripts which are controlled by RamA, RamB, and GlxR. J. Biotechnol. 2011, 154:140-148.
100. Vašicová P., Pátek M., Nešvera J., Sahm H., Eikmanns B. Analysis of the Corynebacterium glutamicum dapA promoter. J. Bacteriol. 1999, 181:6188-6191.
101. von der Osten C.H., Barbas C.F., Wong C.H., Sinskey A.J. Molecular cloning, nucleotide sequence and fine-structural analysis of the Corynebacterium glutamicum fda gene: structural comparison of C. glutamicum fructose-1,6-biphosphate aldolase to class I and class II aldolases. Mol. Microbiol. 1989, 3:1625-1637.
102. Wade J.T., Roa D.C., Grainger D.C., Hurd D., Busby S.J., Struhl K., Nudler E. Extensive functional overlap between sigma factors in Escherichia coli. Nat. Struct. Mol. Biol. 2006, 13:806-814.
103. Weber H., Polen T., Heuveling J., Wendisch V.F., Hengge R. Genome-wide analysis of the general stress response network in Escherichia coli: σS-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 2005, 187:1591-1603.
104. Wehrmann A., Phillipp B., Sahm H., Eggeling L. Different modes of diaminopimelate synthesis and their role in cell wall integrity: a study with Corynebacterium glutamicum. J. Bacteriol. 1998, 180:3159-3165.
105. Zemanová M., Kadeřábková P., Pátek M., Knoppová M., Šilar R., Nešvera J. Chromosomally encoded small antisense RNA in Corynebacterium glutamicum. FEMS Microbiol. Lett. 2008, 279:195-201.