메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

VTCdb: A gene co-expression database for the crop species Vitis vinifera (grapevine)

Author keywords

[No Author keywords available]

Indexed keywords

FLAVONOID;

EID: 84890282275     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-882     Document Type: Article
Times cited : (56)

References (59)
  • 1
    • 84893669059 scopus 로고    scopus 로고
    • FAOSTAT
    • FAOSTAT. 2013, [http://faostat.fao.org].
    • (2013)
  • 2
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • 10.1038/nature06148, 17721507
    • Jaillon OJ, Aury JM, Noel B, Policriti A, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449(7161):463-467. 10.1038/nature06148, 17721507.
    • (2007) Nature , vol.449 , Issue.7161 , pp. 463-467
    • Jaillon, O.J.1    Aury, J.M.2    Noel, B.3    Policriti, A.4
  • 4
    • 84860375778 scopus 로고    scopus 로고
    • Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences
    • 10.1186/1756-0500-5-213, 3419625, 22554261
    • Grimplet J, Van Hemert J, Carbonell-Bejerano P, Diaz-Riquelme J, Dickerson J, Fennell A, Pezzotti M, Martinez-Zapater J. Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences. BMC Research Notes 2012, 5(1):213. 10.1186/1756-0500-5-213, 3419625, 22554261.
    • (2012) BMC Research Notes , vol.5 , Issue.1 , pp. 213
    • Grimplet, J.1    Van Hemert, J.2    Carbonell-Bejerano, P.3    Diaz-Riquelme, J.4    Dickerson, J.5    Fennell, A.6    Pezzotti, M.7    Martinez-Zapater, J.8
  • 6
    • 84865219089 scopus 로고    scopus 로고
    • Gene prediction and functional annotation in the Vitis vinifera genome
    • Forcato C. Gene prediction and functional annotation in the Vitis vinifera genome. PhD Thesis 2010, 1:120.
    • (2010) PhD Thesis , vol.1 , pp. 120
    • Forcato, C.1
  • 8
    • 38949154551 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at veraison
    • 10.1186/1471-2164-8-428, 2228314, 18034875
    • Pilati S, Perazzolli M, Malossini A, Cestaro A, Dematte L, Fontana P, Dal Ri A, Viola R, Velasco R, Moser C. Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at veraison. BMC Genomics 2007, 8(1):428. 10.1186/1471-2164-8-428, 2228314, 18034875.
    • (2007) BMC Genomics , vol.8 , Issue.1 , pp. 428
    • Pilati, S.1    Perazzolli, M.2    Malossini, A.3    Cestaro, A.4    Dematte, L.5    Fontana, P.6    Dal Ri, A.7    Viola, R.8    Velasco, R.9    Moser, C.10
  • 9
    • 34447643281 scopus 로고    scopus 로고
    • Tissue-specific mRNA expression profiling in grape berry tissues
    • 10.1186/1471-2164-8-187, 1925093, 17584945
    • Grimplet J, Deluc L, Tillett R, Wheatley M, Schlauch K, Cramer G, Cushman J. Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics 2007, 8(1):187. 10.1186/1471-2164-8-187, 1925093, 17584945.
    • (2007) BMC Genomics , vol.8 , Issue.1 , pp. 187
    • Grimplet, J.1    Deluc, L.2    Tillett, R.3    Wheatley, M.4    Schlauch, K.5    Cramer, G.6    Cushman, J.7
  • 10
    • 84868110135 scopus 로고    scopus 로고
    • The grapevine expression Atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
    • 10.1105/tpc.112.100230, 3480284, 22948079
    • Fasoli M, Dal Santo S, Zenoni S, Tornielli GB, Farina L, Zamboni A, Porceddu A, Venturini L, Bicego M, Murino V, et al. The grapevine expression Atlas reveals a deep transcriptome shift driving the entire plant into a maturation program. Plant Cell 2012, 24(9):3489-3505. 10.1105/tpc.112.100230, 3480284, 22948079.
    • (2012) Plant Cell , vol.24 , Issue.9 , pp. 3489-3505
    • Fasoli, M.1    Dal Santo, S.2    Zenoni, S.3    Tornielli, G.B.4    Farina, L.5    Zamboni, A.6    Porceddu, A.7    Venturini, L.8    Bicego, M.9    Murino, V.10
  • 11
    • 70350450563 scopus 로고    scopus 로고
    • Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine
    • 10.1186/1471-2164-10-460, 2761425, 19799775
    • Hren M, Nikolic P, Rotter A, Blejec A, Terrier N, Ravnikar M, Dermastia M, Gruden K. Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine. BMC Genomics 2009, 10(1):460. 10.1186/1471-2164-10-460, 2761425, 19799775.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 460
    • Hren, M.1    Nikolic, P.2    Rotter, A.3    Blejec, A.4    Terrier, N.5    Ravnikar, M.6    Dermastia, M.7    Gruden, K.8
  • 12
    • 84155176751 scopus 로고    scopus 로고
    • Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening
    • 10.1186/1471-2164-12-631, 3283566, 22192855
    • Pastore C, Zenoni S, Tornielli GB, Allegro G, Dal Santo S, Valentini G, Intrieri C, Pezzotti M, Filippetti I. Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening. BMC Genomics 2011, 12(1):631. 10.1186/1471-2164-12-631, 3283566, 22192855.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 631
    • Pastore, C.1    Zenoni, S.2    Tornielli, G.B.3    Allegro, G.4    Dal Santo, S.5    Valentini, G.6    Intrieri, C.7    Pezzotti, M.8    Filippetti, I.9
  • 15
    • 34249697574 scopus 로고    scopus 로고
    • Approaches for Extracting Practical Information from Gene Co-expression Networks in Plant Biology
    • 10.1093/pcp/pcm013, 17251202
    • Aoki K, Ogata Y, Shibata D. Approaches for Extracting Practical Information from Gene Co-expression Networks in Plant Biology. Plant Cell Physiol 2007, 48(3):381-390. 10.1093/pcp/pcm013, 17251202.
    • (2007) Plant Cell Physiol , vol.48 , Issue.3 , pp. 381-390
    • Aoki, K.1    Ogata, Y.2    Shibata, D.3
  • 17
    • 0346095291 scopus 로고    scopus 로고
    • Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
    • 10.1038/nbt918, 14647306
    • Ihmels J, Levy R, Barkai N. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat Biotechnol 2004, 22(1):86-92. 10.1038/nbt918, 14647306.
    • (2004) Nat Biotechnol , vol.22 , Issue.1 , pp. 86-92
    • Ihmels, J.1    Levy, R.2    Barkai, N.3
  • 18
    • 4644292576 scopus 로고    scopus 로고
    • The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model
    • 10.1038/sj.embor.7400090, 1299002, 14968131
    • van Noort V, Snel B, Huynen MA. The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model. EMBO Rep 2004, 5(3):280-284. 10.1038/sj.embor.7400090, 1299002, 14968131.
    • (2004) EMBO Rep , vol.5 , Issue.3 , pp. 280-284
    • van Noort, V.1    Snel, B.2    Huynen, M.A.3
  • 19
    • 19344374050 scopus 로고    scopus 로고
    • Similarities and differences in genome-wide expression data of Six organisms
    • 300882, 14737187
    • Bergmann S, Ihmels J, Barkai N. Similarities and differences in genome-wide expression data of Six organisms. PLoS Biol 2003, 2(1):e9. 300882, 14737187.
    • (2003) PLoS Biol , vol.2 , Issue.1
    • Bergmann, S.1    Ihmels, J.2    Barkai, N.3
  • 20
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • 10.1126/science.1087447, 12934013
    • Stuart JM, Segal E, Koller D, Kim SK. A gene-coexpression network for global discovery of conserved genetic modules. Science 2003, 302(5643):249-255. 10.1126/science.1087447, 12934013.
    • (2003) Science , vol.302 , Issue.5643 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 21
    • 79955581503 scopus 로고    scopus 로고
    • PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species
    • 10.1105/tpc.111.083667, 3082271, 21441431
    • Mutwil M, Klie S, Tohge T, Giorgi FM, Wilkins O, Campbell MM, Fernie AR, Usadel B, Nikoloski Z, Persson S. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. Plant Cell 2011, 23(3):895-910. 10.1105/tpc.111.083667, 3082271, 21441431.
    • (2011) Plant Cell , vol.23 , Issue.3 , pp. 895-910
    • Mutwil, M.1    Klie, S.2    Tohge, T.3    Giorgi, F.M.4    Wilkins, O.5    Campbell, M.M.6    Fernie, A.R.7    Usadel, B.8    Nikoloski, Z.9    Persson, S.10
  • 22
    • 58149197587 scopus 로고    scopus 로고
    • ATTED-II provides coexpressed gene networks for Arabidopsis
    • 2686564, 18953027
    • Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K. ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res 2009, 37(suppl 1):D987-D991. 2686564, 18953027.
    • (2009) Nucleic Acids Res , vol.37 , Issue.SUPPL. 1
    • Obayashi, T.1    Hayashi, S.2    Saeki, M.3    Ohta, H.4    Kinoshita, K.5
  • 23
    • 84877854757 scopus 로고    scopus 로고
    • PLANEX: the plant co-expression database
    • 10.1186/1471-2229-13-83, 3663717, 23688397
    • Yim W, Yu Y, Song K, Jang C, Lee B-M. PLANEX: the plant co-expression database. BMC Plant Biol 2013, 13(1):83. 10.1186/1471-2229-13-83, 3663717, 23688397.
    • (2013) BMC Plant Biol , vol.13 , Issue.1 , pp. 83
    • Yim, W.1    Yu, Y.2    Song, K.3    Jang, C.4    Lee, B.-M.5
  • 24
    • 84859336922 scopus 로고    scopus 로고
    • Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches
    • 10.1104/pp.111.188367, 3343727, 22307966
    • Fukushima A, Nishizawa T, Hayakumo M, Hikosaka S, Saito K, Goto E, Kusano M. Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches. Plant Physiol 2012, 158(4):1487-1502. 10.1104/pp.111.188367, 3343727, 22307966.
    • (2012) Plant Physiol , vol.158 , Issue.4 , pp. 1487-1502
    • Fukushima, A.1    Nishizawa, T.2    Hayakumo, M.3    Hikosaka, S.4    Saito, K.5    Goto, E.6    Kusano, M.7
  • 25
    • 79951562208 scopus 로고    scopus 로고
    • ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering Plants
    • 10.1093/pcp/pcq203, 3037081, 21217125
    • Obayashi T, Nishida K, Kasahara K, Kinoshita K. ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering Plants. Plant Cell Physiol 2011, 52(2):213-219. 10.1093/pcp/pcq203, 3037081, 21217125.
    • (2011) Plant Cell Physiol , vol.52 , Issue.2 , pp. 213-219
    • Obayashi, T.1    Nishida, K.2    Kasahara, K.3    Kinoshita, K.4
  • 26
    • 37849020436 scopus 로고    scopus 로고
    • Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'
    • 10.1016/j.tplants.2007.10.006, 18160330
    • Saito K, Hirai MY, Yonekura-Sakakibara K. Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'. Trends Plant Sci 2008, 13(1):36-43. 10.1016/j.tplants.2007.10.006, 18160330.
    • (2008) Trends Plant Sci , vol.13 , Issue.1 , pp. 36-43
    • Saito, K.1    Hirai, M.Y.2    Yonekura-Sakakibara, K.3
  • 27
    • 78649679994 scopus 로고    scopus 로고
    • Recent advances in clustering methods for protein interaction networks
    • Wang J, Li M, Deng Y, Pan Y. Recent advances in clustering methods for protein interaction networks. BMC Genomics 2010, 11(Suppl 3):S10.
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 3
    • Wang, J.1    Li, M.2    Deng, Y.3    Pan, Y.4
  • 28
    • 77952799294 scopus 로고    scopus 로고
    • CoP: a database for characterizing co-expressed gene modules with biological information in plants
    • 10.1093/bioinformatics/btq121, 20305269
    • Ogata Y, Suzuki H, Sakurai N, Shibata D. CoP: a database for characterizing co-expressed gene modules with biological information in plants. Bioinformatics 2010, 26(9):1267-1268. 10.1093/bioinformatics/btq121, 20305269.
    • (2010) Bioinformatics , vol.26 , Issue.9 , pp. 1267-1268
    • Ogata, Y.1    Suzuki, H.2    Sakurai, N.3    Shibata, D.4
  • 29
    • 20844445318 scopus 로고    scopus 로고
    • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
    • 10.1073/pnas.0503392102, 1142401, 15932943
    • Persson S, Wei H, Milne J, Page GP, Somerville CR. Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc Natl Acad Sci U S A 2005, 102(24):8633-8638. 10.1073/pnas.0503392102, 1142401, 15932943.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.24 , pp. 8633-8638
    • Persson, S.1    Wei, H.2    Milne, J.3    Page, G.P.4    Somerville, C.R.5
  • 30
    • 34547526914 scopus 로고    scopus 로고
    • Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
    • 10.1073/pnas.0611629104, 1849962, 17420480
    • Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki A, Araki R, Sakurai N, Suzuki H, Aoki K, et al. Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci 2007, 104(15):6478-6483. 10.1073/pnas.0611629104, 1849962, 17420480.
    • (2007) Proc Natl Acad Sci , vol.104 , Issue.15 , pp. 6478-6483
    • Hirai, M.Y.1    Sugiyama, K.2    Sawada, Y.3    Tohge, T.4    Obayashi, T.5    Suzuki, A.6    Araki, R.7    Sakurai, N.8    Suzuki, H.9    Aoki, K.10
  • 31
    • 84861109134 scopus 로고    scopus 로고
    • PLEXdb: gene expression resources for plants and plant pathogens
    • 10.1093/nar/gkr938, 3245067, 22084198
    • Dash S, Van Hemert J, Hong L, Wise RP, Dickerson JA. PLEXdb: gene expression resources for plants and plant pathogens. Nucleic Acids Res 2012, 40(D1):D1194-D1201. 10.1093/nar/gkr938, 3245067, 22084198.
    • (2012) Nucleic Acids Res , vol.40 , Issue.D1
    • Dash, S.1    Van Hemert, J.2    Hong, L.3    Wise, R.P.4    Dickerson, J.A.5
  • 32
    • 77957230671 scopus 로고    scopus 로고
    • A framework for oligonucleotide microarray preprocessing
    • 10.1093/bioinformatics/btq431, 2944196, 20688976
    • Carvalho BS, Irizarry RA. A framework for oligonucleotide microarray preprocessing. Bioinformatics 2010, 26(19):2363-2367. 10.1093/bioinformatics/btq431, 2944196, 20688976.
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2363-2367
    • Carvalho, B.S.1    Irizarry, R.A.2
  • 33
    • 73249138596 scopus 로고    scopus 로고
    • Assembly of an interactive correlation network for the arabidopsis genome using a novel Heuristic Clustering Algorithm
    • 10.1104/pp.109.145318, 2799344, 19889879
    • Mutwil M, Usadel B, Schütte M, Loraine A, Ebenhöh O, Persson S. Assembly of an interactive correlation network for the arabidopsis genome using a novel Heuristic Clustering Algorithm. Plant Physiol 2010, 152(1):29-43. 10.1104/pp.109.145318, 2799344, 19889879.
    • (2010) Plant Physiol , vol.152 , Issue.1 , pp. 29-43
    • Mutwil, M.1    Usadel, B.2    Schütte, M.3    Loraine, A.4    Ebenhöh, O.5    Persson, S.6
  • 34
    • 73249114746 scopus 로고    scopus 로고
    • Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression
    • 10.1093/dnares/dsp016, 2762411, 19767600
    • Obayashi T, Kinoshita K. Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression. DNA Research 2009, 16(5):249-260. 10.1093/dnares/dsp016, 2762411, 19767600.
    • (2009) DNA Research , vol.16 , Issue.5 , pp. 249-260
    • Obayashi, T.1    Kinoshita, K.2
  • 35
    • 48449091196 scopus 로고    scopus 로고
    • GeneCAT-novel webtools that combine BLAST and co-expression analyses
    • 2447783, 18480120
    • Mutwil M, Øbro J, Willats WGT, Persson S. GeneCAT-novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res 2008, 36(suppl 2):W320-W326. 2447783, 18480120.
    • (2008) Nucleic Acids Res , vol.36 , Issue.SUPPL. 2
    • Mutwil, M.1    Øbro, J.2    Willats, W.G.T.3    Persson, S.4
  • 36
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • 10.1093/nar/30.7.1575, 101833, 11917018
    • Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 2002, 30(7):1575-1584. 10.1093/nar/30.7.1575, 101833, 11917018.
    • (2002) Nucleic Acids Res , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 37
    • 34547571030 scopus 로고    scopus 로고
    • G:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments
    • 1933153, 17478515
    • Reimand J, Kull M, Peterson H, Hansen J, Vilo J. g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res 2007, 35(suppl 2):W193-W200. 1933153, 17478515.
    • (2007) Nucleic Acids Res , vol.35 , Issue.SUPPL. 2
    • Reimand, J.1    Kull, M.2    Peterson, H.3    Hansen, J.4    Vilo, J.5
  • 38
    • 79955771442 scopus 로고    scopus 로고
    • GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns
    • 10.1093/bioinformatics/btr142, 3087953, 21421553
    • Yang X, Li J, Lee Y, Lussier YA. GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. Bioinformatics 2011, 27(10):1444-1446. 10.1093/bioinformatics/btr142, 3087953, 21421553.
    • (2011) Bioinformatics , vol.27 , Issue.10 , pp. 1444-1446
    • Yang, X.1    Li, J.2    Lee, Y.3    Lussier, Y.A.4
  • 39
    • 77949524119 scopus 로고    scopus 로고
    • VitisNet: " Omics" Integration through Grapevine Molecular Networks
    • 10.1371/journal.pone.0008365, 2791446, 20027228
    • Grimplet J, Cramer GR, Dickerson JA, Mathiason K, Van Hemert J, Fennell AY. VitisNet: " Omics" Integration through Grapevine Molecular Networks. PLoS One 2009, 4(12):e8365. 10.1371/journal.pone.0008365, 2791446, 20027228.
    • (2009) PLoS One , vol.4 , Issue.12
    • Grimplet, J.1    Cramer, G.R.2    Dickerson, J.A.3    Mathiason, K.4    Van Hemert, J.5    Fennell, A.Y.6
  • 40
    • 77956548953 scopus 로고    scopus 로고
    • Cytoscape Web: an interactive web-based network browser
    • 10.1093/bioinformatics/btq430, 2935447, 20656902
    • Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Cytoscape Web: an interactive web-based network browser. Bioinformatics 2010, 26(18):2347-2348. 10.1093/bioinformatics/btq430, 2935447, 20656902.
    • (2010) Bioinformatics , vol.26 , Issue.18 , pp. 2347-2348
    • Lopes, C.T.1    Franz, M.2    Kazi, F.3    Donaldson, S.L.4    Morris, Q.5    Bader, G.D.6
  • 41
    • 0001440955 scopus 로고
    • Research on development and ripening of the grape berry
    • Coombe BG. Research on development and ripening of the grape berry. Am J Enol Vitic 1992, 43(1):101-110.
    • (1992) Am J Enol Vitic , vol.43 , Issue.1 , pp. 101-110
    • Coombe, B.G.1
  • 42
    • 84874717255 scopus 로고    scopus 로고
    • The grape berry-specific basic helix-loop-helix transcription factor VvCEB1 affects cell size
    • 10.1093/jxb/ers374, 3580811, 23314819
    • Nicolas P, Lecourieux D, Gomès E, Delrot S, Lecourieux F. The grape berry-specific basic helix-loop-helix transcription factor VvCEB1 affects cell size. J Exp Bot 2013, 64(4):991-1003. 10.1093/jxb/ers374, 3580811, 23314819.
    • (2013) J Exp Bot , vol.64 , Issue.4 , pp. 991-1003
    • Nicolas, P.1    Lecourieux, D.2    Gomès, E.3    Delrot, S.4    Lecourieux, F.5
  • 43
    • 36048961743 scopus 로고    scopus 로고
    • Expression of three expansin genes during development and maturation of Kyoho grape berries
    • 10.1016/j.jplph.2006.07.017, 17175064
    • Ishimaru M, Smith DL, Gross KC, Kobayashi S. Expression of three expansin genes during development and maturation of Kyoho grape berries. J Plant Physiol 2007, 164(12):1675-1682. 10.1016/j.jplph.2006.07.017, 17175064.
    • (2007) J Plant Physiol , vol.164 , Issue.12 , pp. 1675-1682
    • Ishimaru, M.1    Smith, D.L.2    Gross, K.C.3    Kobayashi, S.4
  • 44
    • 84876191620 scopus 로고    scopus 로고
    • Genome-wide analysis of the expansin gene superfamily reveals grapevine-specific structural and functional characteristics
    • 10.1371/journal.pone.0062206, 3628503, 23614035
    • Dal Santo S, Vannozzi A, Tornielli GB, Fasoli M, Venturini L, Pezzotti M, Zenoni S. Genome-wide analysis of the expansin gene superfamily reveals grapevine-specific structural and functional characteristics. PLoS One 2013, 8(4):e62206. 10.1371/journal.pone.0062206, 3628503, 23614035.
    • (2013) PLoS One , vol.8 , Issue.4
    • Dal Santo, S.1    Vannozzi, A.2    Tornielli, G.B.3    Fasoli, M.4    Venturini, L.5    Pezzotti, M.6    Zenoni, S.7
  • 45
    • 78650988662 scopus 로고    scopus 로고
    • Ascorbate and glutathione: the heart of the redox hub
    • 10.1104/pp.110.167569, 3075780, 21205630
    • Foyer CH, Noctor G. Ascorbate and glutathione: the heart of the redox hub. Plant Physiol 2011, 155(1):2-18. 10.1104/pp.110.167569, 3075780, 21205630.
    • (2011) Plant Physiol , vol.155 , Issue.1 , pp. 2-18
    • Foyer, C.H.1    Noctor, G.2
  • 47
    • 33745936562 scopus 로고    scopus 로고
    • Structure and function of photosystems I and II
    • 10.1146/annurev.arplant.57.032905.105350, 16669773
    • Nelson N, Yocum CF. Structure and function of photosystems I and II. Annu Rev Plant Biol 2006, 57(1):521-565. 10.1146/annurev.arplant.57.032905.105350, 16669773.
    • (2006) Annu Rev Plant Biol , vol.57 , Issue.1 , pp. 521-565
    • Nelson, N.1    Yocum, C.F.2
  • 48
    • 71249090484 scopus 로고    scopus 로고
    • GUN4 Is required for posttranslational control of plant tetrapyrrole biosynthesis
    • 10.1093/mp/ssp072, 19995725
    • Peter E, Grimm B. GUN4 Is required for posttranslational control of plant tetrapyrrole biosynthesis. Mol Plant 2009, 2(6):1198-1210. 10.1093/mp/ssp072, 19995725.
    • (2009) Mol Plant , vol.2 , Issue.6 , pp. 1198-1210
    • Peter, E.1    Grimm, B.2
  • 49
    • 84874607142 scopus 로고    scopus 로고
    • Network inference analysis identifies an APRR2-like gene linked to pigment accumulation in tomato and pepper fruits
    • 10.1104/pp.112.212654, 3585610, 23292788
    • Pan Y, Bradley G, Pyke K, Ball G, Lu C, Fray R, Marshall A, Jayasuta S, Baxter C, van Wijk R, et al. Network inference analysis identifies an APRR2-like gene linked to pigment accumulation in tomato and pepper fruits. Plant Physiol 2013, 161(3):1476-1485. 10.1104/pp.112.212654, 3585610, 23292788.
    • (2013) Plant Physiol , vol.161 , Issue.3 , pp. 1476-1485
    • Pan, Y.1    Bradley, G.2    Pyke, K.3    Ball, G.4    Lu, C.5    Fray, R.6    Marshall, A.7    Jayasuta, S.8    Baxter, C.9    van Wijk, R.10
  • 51
    • 34250651222 scopus 로고    scopus 로고
    • The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development
    • 10.1104/pp.106.093203, 1820911, 17208963
    • Bogs J, Jaffé FW, Takos AM, Walker AR, Robinson SP. The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development. Plant Physiol 2007, 143(3):1347-1361. 10.1104/pp.106.093203, 1820911, 17208963.
    • (2007) Plant Physiol , vol.143 , Issue.3 , pp. 1347-1361
    • Bogs, J.1    Jaffé, F.W.2    Takos, A.M.3    Walker, A.R.4    Robinson, S.P.5
  • 52
    • 60249090512 scopus 로고    scopus 로고
    • Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathway
    • 2633825, 19098092
    • Terrier N, Torregrosa L, Ageorges A, Vialet S, Verriès C, Cheynier V, Romieu C. Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathway. Plant Physiol 2009, 149(2):1028-1041. 2633825, 19098092.
    • (2009) Plant Physiol , vol.149 , Issue.2 , pp. 1028-1041
    • Terrier, N.1    Torregrosa, L.2    Ageorges, A.3    Vialet, S.4    Verriès, C.5    Cheynier, V.6    Romieu, C.7
  • 53
    • 79957497988 scopus 로고    scopus 로고
    • Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway
    • 10.1093/jxb/erq442, 21278228
    • Hichri I, Barrieu F, Bogs J, Kappel C, Delrot S, Lauvergeat V. Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway. J Exp Bot 2011, 62(8):2465-2483. 10.1093/jxb/erq442, 21278228.
    • (2011) J Exp Bot , vol.62 , Issue.8 , pp. 2465-2483
    • Hichri, I.1    Barrieu, F.2    Bogs, J.3    Kappel, C.4    Delrot, S.5    Lauvergeat, V.6
  • 55
    • 84870717535 scopus 로고    scopus 로고
    • Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression
    • 10.1186/1471-2164-13-691, 3545830, 23227855
    • Sweetman C, Wong D, Ford C, Drew D. Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression. BMC Genomics 2012, 13(1):691. 10.1186/1471-2164-13-691, 3545830, 23227855.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 691
    • Sweetman, C.1    Wong, D.2    Ford, C.3    Drew, D.4
  • 57
    • 84869861785 scopus 로고    scopus 로고
    • Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes
    • Perazzolli M, Moretto M, Fontana P, Ferrarini A, Velasco R, Moser C, Delledonne M, Pertot I. Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes. BMC Genomics 2012, 13(1):1471-2164.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 1471-2164
    • Perazzolli, M.1    Moretto, M.2    Fontana, P.3    Ferrarini, A.4    Velasco, R.5    Moser, C.6    Delledonne, M.7    Pertot, I.8
  • 58
    • 84875159954 scopus 로고    scopus 로고
    • Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana
    • 10.1093/bioinformatics/btt053, 23376351
    • Giorgi FM, Del Fabbro C, Licausi F. Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana. Bioinformatics 2013, 29(6):717-724. 10.1093/bioinformatics/btt053, 23376351.
    • (2013) Bioinformatics , vol.29 , Issue.6 , pp. 717-724
    • Giorgi, F.M.1    Del Fabbro, C.2    Licausi, F.3
  • 59
    • 84877249559 scopus 로고    scopus 로고
    • Canonical correlation analysis for RNA-seq co-expression networks
    • 10.1093/nar/gkt145, 3632131, 23460206
    • Hong S, Chen X, Jin L, Xiong M. Canonical correlation analysis for RNA-seq co-expression networks. Nucleic Acids Res 2013, 41(8):e95. 10.1093/nar/gkt145, 3632131, 23460206.
    • (2013) Nucleic Acids Res , vol.41 , Issue.8
    • Hong, S.1    Chen, X.2    Jin, L.3    Xiong, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.