The grape berry-specific basic helix-loop-helix transcription factor VvCEB1 affects cell size

Journal of Experimental Botany

Volumn 64, Issue 4, 2013, Pages 991-1003

  Nicolas, Philippe ^a,b   Lecourieux, David ^a   Gomès, Eric ^a   Delrot, Serge ^a   Lecourieux, Fatma ^a  

^a Bordeaux Sciences Agro   (France)

^b CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

Author keywords

auxin; bHLH; cell expansion; fruit; grape; transcription factor

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; INDOLEACETIC ACID DERIVATIVE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL ENLARGEMENT; CELL SIZE; CYTOLOGY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PLANT CELL; PLANT GENE; PLANT SEED; PROMOTER REGION; SEQUENCE ANALYSIS; TOMATO; TRANSGENIC PLANT; VITIS;

AMINO ACID SEQUENCE; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; CELL ENLARGEMENT; CELL SIZE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; INDOLEACETIC ACIDS; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT CELLS; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; SEEDS; SEQUENCE ANALYSIS, PROTEIN; VITIS;

EID: 84874717255     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/ers374     Document Type: Article

References (54)

1. Berleth T, Krogan NT, Scarpella, E. 2004. Auxin signals - turning genes on and turning cells around. Current Opinion in Plant Biology 7, 553-563. (Pubitemid 39175153)
2. Blouin J, Guimberteau G. 2000. Maturation et maturité des raisins. France: Féret.
3. Böttcher C, Boss PK, Davies C. 2011. Acyl substrate preferences of an IAA-amido synthetase account for variations in grape (Vitis vinifera L.) berry ripening caused by different auxinic compounds indicating the importance of auxin conjugation in plant development. Journal of Experimental Botany 62, 4267-4280.
4. Carrari F, Fernie AR. 2006. Metabolic regulation underlying tomato fruit development. Journal of Experimental Botany 57, 1883-1897. (Pubitemid 43992239)
5. Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T. 2005. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21, 2933-2942. (Pubitemid 40916416)
6. Castillon A, Shen H, Huq E. 2007. Phytochrome interacting factors, central players in phytochrome-mediated light signaling networks. Trends Plant Science 12, 514-521. (Pubitemid 350017116)
7. Chervin C, Tira-umphon A, Terrier N, Zouine M, Severac D, Roustan JP. 2008. Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase. Physiology Plantarum 134, 534-546.
8. Chung Y, Maharjan PM, Lee O, et al. 2011. Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis. The Plant Journal 66, 564-578.
9. Conde C, Silva P, Fontes N, Dias ACP, Tavares RM, Sousa MJ, Agasse A, Delrot S, Gerós H. 2007 Biochemical changes throughout grape berry development and fruit and wine quality. Food 1, 1-22.
10. Coombe BG, McCarthy MG. 2000. Dynamics of grape berry growth and physiology of ripening. Australian Journal of Grape Wine Research 6, 131-135.
11. Coombe BG. 1992. Research on development and ripening of the grape berry. American Journal of Enology and Viticulture 43, 101-110.
12. Coutos-Thévenot P, Goebel-Tourand I, Mauro MC, Jouanneau JP, Boulay M, Deloire A, Guern J. 1992a. Somatic embryogenesis from grapevine cells. I. Improvement of embryo development by changes in culture conditions. Plant Cell Tissue Organ Culture 29, 125-133.
13. Coutos-Thévenot P, Maës O, Jouenne T, Mauro MC, Boulay M, Deloire A, Guern J. 1992b. Extracellular protein patterns of grapevine cell suspensions in embryogenic and non-embryogenic situations. Plant Science 86, 137-145.
14. de Smet I, Lau S, Voß U, et al. 2010. Bimodular auxin response controls organogenesis in Arabidopsis. Proceedings of the National Academy of Sciences, USA 107, 2705-2710.
15. Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR. 2007. Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC Genomics 8, 429.
16. Feller A, Machemer K, Braun EL, Grotewold E. 2011. Evolutionary and comparative genomics of MYB and bHLH plant transcription factors. The Plant Journal 66, 94-116.
17. Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. 2002. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics 162, 144-156.
18. Gee MA, Hagen G, Guilfoyle TJ. 1991. Tissue-specific and organspecific expression of soybean auxin-responsive transcripts GH3 and SAURs. Plant Cell 3, 419-430. (Pubitemid 21913708)
19. Gonzalez N, Gévaudant F, Hernould M, Chevalier C, Mouras A. 2007. The cell cycle-associated protein kinase WEE1 regulates cell size in relation to endoreduplication in developing tomato fruit. The Plant Journal 51, 642-655. (Pubitemid 47248543)
20. Hagen G, Guilfoyle T. 2002. Auxin-responsive gene expression, genes, promoters and regulatory factors. Plant Molecular Biology 49, 373-385. (Pubitemid 34519755)
21. Hichri I, Heppel SC, Pillet J, Léon C, Czemmel S, Delrot S, Lauvergeat V, Bogs J. 2010. The basic helix-loop-helix transcription factor MYC1 is involved in the regulation of the flavonoid biosynthesis pathway in grapevine. Molecular Plant 3, 509-523.
22. Hosy E, Duby G, Véry AA, Costa A, Sentenac H, Thibaud JB. 2005. A procedure for localisation and electrophysiological characterisation of ion channels heterologously expressed in a plant context. Plant Methods 1, 14.
23. Ichihashi Y, Horiguchi G, Gleissberg S, Tsukaya H. 2010. The bHLH transcription factor SPATULA controls final leaf size in Arabidopsis thaliana. Plant Cell Physiology 51, 252-261.
24. Jenik PD, Barton MK. 2005. Surge and destroy, the role of auxin in plant embryogenesis. Development 132, 3577-3585. (Pubitemid 41301096)
25. Karimi M, Inzé D, Depicker A. 2002. GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends in Plant Science 7, 193-195. (Pubitemid 36725938)
26. Kay S, Hahn S, Marois E, Hause G, Bonas U. 2007. A bacteria effector acts as a plant transcription factor and induces a cell size regulator. Science 318, 648-651. (Pubitemid 350014839)
27. Kiegerl S, Cardinale F, Siligan C, et al. 2000. SIMKK, a mitogenactivated protein kinase (MAPK) kinase, is a specific activator of the salt stress-induced MAPK, SIMK. Plant Cell 12, 2247-2258. (Pubitemid 32053407)
28. Knauss S, Rohrmeier T, Lehle L. 2003. The auxin-induced maize gene ZmSAUR2 encodes a short-lived nuclear protein expressed in elongating tissues. Journal of Biological Chemistry 278, 23936-23943. (Pubitemid 36830222)
29. Kohno M, Takato H, Horiuchi H, Fujita K, Suzuki S. 2012. Auxinnonresponsive grape Aux/IAA19 is a positive regulator of plant growth. Molecular Biology 39, 911-917.
30. Kuang JF, Zhang Y, Chen JY, Chen QJ, Jiang YM, Lin HT, Xu SJ, Lu WJ. 2011. Two GH3 genes from longan are differentially regulated during fruit growth and development. Gene 485, 1-6.
31. Lecourieux F, Lecourieux D, Vignault C, Delrot S. 2010. A sugar inducible protein kinase, VvSK1, regulates hexose transport and sugar accumulation in grape cells. Plant Physiology 152, 1096-1106.
32. Lemaire-Chamley M, Petit J, Garcia V, Just D, Baldet P, Germain V, Fagard M, Mouassite M, Cheniclet C, Rothan C. 2005. Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato. Plant Physiology 139, 750-769. (Pubitemid 43907104)
33. Littlewood T, Evan GI. 1998. Helix-loop-helix transcription factors, 3rd edn. New York: Oxford University Press.
34. Liu C, Xu Z, Chua NH. 1993. Auxin polar transport is essential for the establishment of bilateral symmetry during early plant embryogenesis. Plant Cell 5, 621-630.
35. Liu H, Yu X, Li K, Klejnot J, Yang H, Lisiero D, Lin C. 2008. Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis. Science 322, 1535-1539.
36. Matus JT, Poupin MJ, Cañón P, Bordeu E, Alcalde JA, Arce- Johnson P. 2010. Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.). Plant Molecular Biology 72, 607-620.
37. Mauro MC, Toutain S, Walter B, Pinck L, Otten L, Coutos- Thévenot P, Deloire A, Barbier P. 1995. High efficiency regeneration of grapevine plants transformed with the GFLV coat protein gene. Plant Science 112, 97-106. (Pubitemid 3009713)
38. Moller B, Weijers D. 2009. Auxin control of embryo patterning. Cold Spring Harbor Perspectives in Biology 1, a001545.
39. Paponov IA, Paponov M, Teale WD, Menges M, Chakrabortee S, Murray JAH, Palme K. 2008. Comprehensive transcriptome analysis of auxin responses in Arabidopsis. Molecular Plant 1, 321-337.
40. Pires N, Dolan L. 2010. Origin and diversification of basic-helix-loophelix proteins in plants. Molecular Biology and Evolution 27, 862-874.
41. Quandt K, Frech K, Karas H, Wingender E, Werner T. 1995. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Research 23, 4878-4884. (Pubitemid 3008389)
42. Ramsay NA, Glover BJ. 2005. MYB-bHLH-WD40 protein complex and the evolution of cellular diversity. Trends in Plant Science 10, 63-70. (Pubitemid 40234481)
43. Reid KE, Olsson N, Schlosser J, Peng F, Lund ST. 2006. An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biology 6, 27.
44. Schenck D, Christian M, Jones A, Lüthen H. 2010. Rapid auxininduced cell expansion and gene expression: a four-decade-old question revisited. Plant Physiology 152, 1183-1185.
45. Spartz AK, Lee SH, Wenger JP, Gonzalez N, Itoh H, Inzé D, Peer WA, Murphy AS, Overvoorde PJ, Gray WM. 2012. The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion. The Plant Journal 70, 978-990.
46. Szécsi J, Joly C, Bordji K, Varaud E, Cock JM, Dumas C, and Bendahmane M. 2006. BIGPETALp, a bHLH transcription factor is involved in the control of Arabidopsis petal size. EMBO Journal 25, 3912-3920. (Pubitemid 44300276)
47. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4, Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596-1599. (Pubitemid 47236692)
48. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W, improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680. (Pubitemid 24354800)
49. Toledo-Ortiz G, Huq E, Quail PH. 2003. The Arabidopsis basic/ helix-loop-helix transcription factor family. Plant Cell 15, 1749-1770. (Pubitemid 37078332)
50. Vanneste S, Friml J. 2009. Auxin, a trigger for change in plant development. Cell 136, 1005-1016.
51. Varaud E, Brioudes F, Szécsi J, Leroux J, Brown S, Perrot- Rechenmann C, Bendahmane M. 2011. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Plant Cell 23, 973-983.
52. Woodward AW, Bartel B. 2005. Auxin: regulation, action, and interaction. Annals of Botany 95, 707-735. (Pubitemid 41238659)
53. Yang CJ, Zhang C, Lu YN, Jin JQ, Wang XL. 2011. The mechanisms of brassinosteroids' action: from signal transduction to plant development. Molecular Plantarum 4, 588-600.
54. Zentella R, Zhang ZL, Park M, et al. 2007. Global analysis of DELLA direct targets in early gibberellin signaling in Arabidopsis. Plant Cell 19, 3037-3057. (Pubitemid 350276710)