메뉴 건너뛰기




Volumn 165, Issue , 2014, Pages 281-287

Selection of suitable inner reference genes for normalisation of microRNA expression response to abiotic stresses by RT-qPCR in leaves, flowers and young stems of peach

Author keywords

Abiotic stess; MiRNA; Peach; QRT PCR; Reference gene

Indexed keywords

ENVIRONMENTAL STRESS; FACILITATION; FRUIT; GENE EXPRESSION; PHYSIOLOGICAL RESPONSE; POLYMERASE CHAIN REACTION; RNA;

EID: 84890246309     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2013.10.030     Document Type: Article
Times cited : (24)

References (32)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 3
    • 0030885027 scopus 로고    scopus 로고
    • Crop load and water stress effects on daily stem growth in peach (Prunus persica)
    • Berman M.E., DeJong T.M. Crop load and water stress effects on daily stem growth in peach (Prunus persica). Tree Physiol. 1996, 17:467-472.
    • (1996) Tree Physiol. , vol.17 , pp. 467-472
    • Berman, M.E.1    DeJong, T.M.2
  • 4
    • 77951587943 scopus 로고    scopus 로고
    • MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer
    • Chang K.H., Mestdagh P., Vandesompele J., Kerin M.J., Miller N. MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer. BMC Cancer 2010, 10:173.
    • (2010) BMC Cancer , vol.10 , pp. 173
    • Chang, K.H.1    Mestdagh, P.2    Vandesompele, J.3    Kerin, M.J.4    Miller, N.5
  • 6
    • 33846449136 scopus 로고    scopus 로고
    • Effects of post-harvest regulated deficit irrigation on carbohydrate and nitrogen partitioning, yield quality and vegetative growth of peach trees
    • Dichio B., Xiloyannis C., Sofo A., Montanaro G. Effects of post-harvest regulated deficit irrigation on carbohydrate and nitrogen partitioning, yield quality and vegetative growth of peach trees. Plant Soil 2006, 290:127-137.
    • (2006) Plant Soil , vol.290 , pp. 127-137
    • Dichio, B.1    Xiloyannis, C.2    Sofo, A.3    Montanaro, G.4
  • 7
    • 84870804412 scopus 로고    scopus 로고
    • Genome-wide identification of miRNAs responsive to drought in peach (Prunus persica) by high-throughput deep sequencing
    • Eldem V., Celikkol Akcay U., Ozhuner E., Bakir Y., Uranbey S., Unver T. Genome-wide identification of miRNAs responsive to drought in peach (Prunus persica) by high-throughput deep sequencing. PLoS ONE 2012, 7:e50298.
    • (2012) PLoS ONE , vol.7
    • Eldem, V.1    Celikkol Akcay, U.2    Ozhuner, E.3    Bakir, Y.4    Uranbey, S.5    Unver, T.6
  • 8
    • 81255138188 scopus 로고    scopus 로고
    • Selection of suitable inner reference genes for relative quantification expression of microRNA in wheat
    • Feng H., Huang X., Zhang Q., Wei G., Wang X., Kang Z. Selection of suitable inner reference genes for relative quantification expression of microRNA in wheat. Plant Physiol. Biochem. 2012, 51:116-122.
    • (2012) Plant Physiol. Biochem. , vol.51 , pp. 116-122
    • Feng, H.1    Huang, X.2    Zhang, Q.3    Wei, G.4    Wang, X.5    Kang, Z.6
  • 9
    • 84870316228 scopus 로고    scopus 로고
    • Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica)
    • Gao Z., Luo X., Shi T., Cai B., Zhang Z., Cheng Z., Zhuang W. Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica). Mol. Cells 2012, 34:239-249.
    • (2012) Mol. Cells , vol.34 , pp. 239-249
    • Gao, Z.1    Luo, X.2    Shi, T.3    Cai, B.4    Zhang, Z.5    Cheng, Z.6    Zhuang, W.7
  • 10
    • 84866373395 scopus 로고    scopus 로고
    • High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    • Gao Z., Shi T., Luo X., Zhang Z., Zhuang W., Wang L. High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot. BMC Genomics 2012, 13:371.
    • (2012) BMC Genomics , vol.13 , pp. 371
    • Gao, Z.1    Shi, T.2    Luo, X.3    Zhang, Z.4    Zhuang, W.5    Wang, L.6
  • 12
    • 0033970228 scopus 로고    scopus 로고
    • Association of marginal leaf scorch with sodium accumulation in salt-stressed peach
    • Karakas B.R.L.B., Rieger M. Association of marginal leaf scorch with sodium accumulation in salt-stressed peach. HortScience 2000, 35:83-84.
    • (2000) HortScience , vol.35 , pp. 83-84
    • Karakas, B.R.L.B.1    Rieger, M.2
  • 13
    • 84869093351 scopus 로고    scopus 로고
    • Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues
    • Kou S.J., Wu X.M., Liu Z., Liu Y.L., Xu Q., Guo W.W. Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues. Plant Cell Rep. 2012, 31:2151-2163.
    • (2012) Plant Cell Rep. , vol.31 , pp. 2151-2163
    • Kou, S.J.1    Wu, X.M.2    Liu, Z.3    Liu, Y.L.4    Xu, Q.5    Guo, W.W.6
  • 15
    • 84890169461 scopus 로고    scopus 로고
    • Comparison and observation of waterlogging resistance and anatomical structure of peach rootstocks
    • Ma H., Liu Z., Zhu H., Jia K. Comparison and observation of waterlogging resistance and anatomical structure of peach rootstocks. J. Beijing Agric. Coll. 2006, 21:2.
    • (2006) J. Beijing Agric. Coll. , vol.21 , pp. 2
    • Ma, H.1    Liu, Z.2    Zhu, H.3    Jia, K.4
  • 17
    • 64549093259 scopus 로고    scopus 로고
    • Identification and validation of reference genes for quantitative RT-PCR normalization in wheat
    • Paolacci A.R., Tanzarella O.A., Porceddu E., Ciaffi M. Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. BMC Mol. Biol. 2009, 10:11.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 11
    • Paolacci, A.R.1    Tanzarella, O.A.2    Porceddu, E.3    Ciaffi, M.4
  • 18
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • Peltier H.J., Latham G.J. Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues. RNA 2008, 14:844-852.
    • (2008) RNA , vol.14 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 20
    • 79955705363 scopus 로고    scopus 로고
    • MicroRNA networks and developmental plasticity in plants
    • Rubio-Somoza I., Weigel D. MicroRNA networks and developmental plasticity in plants. Trends Plant Sci. 2011, 16:258-264.
    • (2011) Trends Plant Sci. , vol.16 , pp. 258-264
    • Rubio-Somoza, I.1    Weigel, D.2
  • 21
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative CT method
    • Schmittgen T.D., Livak K.J. Analyzing real-time PCR data by the comparative CT method. Nat. Protoc. 2008, 3:1101-1108.
    • (2008) Nat. Protoc. , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 22
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • Shi R., Chiang V. Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 2005, 39:519-525.
    • (2005) Biotechniques , vol.39 , pp. 519-525
    • Shi, R.1    Chiang, V.2
  • 23
    • 84890250242 scopus 로고    scopus 로고
    • Validation of artificial microRNA expression by poly(A) tailing-based RT-PCR
    • Shi R., Yang C., Sederoff R., Chiang V. Validation of artificial microRNA expression by poly(A) tailing-based RT-PCR. Protoc. Exchange 2012, 10.1038/protex.2012.003.
    • (2012) Protoc. Exchange
    • Shi, R.1    Yang, C.2    Sederoff, R.3    Chiang, V.4
  • 24
    • 77955196800 scopus 로고    scopus 로고
    • MiR-RACE, a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs
    • Song C., Fang J., Wang C., Guo L., Nicholas K.K., Ma Z. MiR-RACE, a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs. PLoS ONE 2010, 5:e10861.
    • (2010) PLoS ONE , vol.5
    • Song, C.1    Fang, J.2    Wang, C.3    Guo, L.4    Nicholas, K.K.5    Ma, Z.6
  • 25
    • 68949217794 scopus 로고    scopus 로고
    • Selection of reliable reference genes for gene expression studies in peach using real-time PCR
    • Tong Z., Gao Z., Wang F., Zhou J., Zhang Z. Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol. Biol. 2009, 10:71.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 71
    • Tong, Z.1    Gao, Z.2    Wang, F.3    Zhou, J.4    Zhang, Z.5
  • 26
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.1
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. research0034.1.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 27
    • 73549121548 scopus 로고    scopus 로고
    • Direct isolation of high-quality low molecular weight RNA of pear peel from the extraction mixture containing nucleic acid
    • Wang X.W., Xiong A.S., Yao Q.H., Zhang Z., Qiao Y.S. Direct isolation of high-quality low molecular weight RNA of pear peel from the extraction mixture containing nucleic acid. Mol. Biotechnol. 2010, 44:61-65.
    • (2010) Mol. Biotechnol. , vol.44 , pp. 61-65
    • Wang, X.W.1    Xiong, A.S.2    Yao, Q.H.3    Zhang, Z.4    Qiao, Y.S.5
  • 28
    • 78650051464 scopus 로고    scopus 로고
    • Computational identification of microRNAs in apple expressed sequence tags and validation of their precise sequences by miR-RACE
    • Yu H., Song C., Jia Q., Wang C., Li F., Nicholas K.K., Zhang X., Fang J. Computational identification of microRNAs in apple expressed sequence tags and validation of their precise sequences by miR-RACE. Physiol. Plant. 2011, 141:56-70.
    • (2011) Physiol. Plant. , vol.141 , pp. 56-70
    • Yu, H.1    Song, C.2    Jia, Q.3    Wang, C.4    Li, F.5    Nicholas, K.K.6    Zhang, X.7    Fang, J.8
  • 30
    • 84872374378 scopus 로고    scopus 로고
    • Bioinformatics prediction of miRNAs in the Prunus persica genome with validation of their precise sequences by miR-RACE
    • Zhang Y., Bai Y., Han J., Chen M., Kayesh E., Jiang W., Fang J. Bioinformatics prediction of miRNAs in the Prunus persica genome with validation of their precise sequences by miR-RACE. J. Plant Physiol. 2012, 170:80-92.
    • (2012) J. Plant Physiol. , vol.170 , pp. 80-92
    • Zhang, Y.1    Bai, Y.2    Han, J.3    Chen, M.4    Kayesh, E.5    Jiang, W.6    Fang, J.7
  • 31
    • 84860318099 scopus 로고    scopus 로고
    • Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE
    • Zhang Y., Yu M., Yu H., Han J., Song C., Ma R., Fang J. Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE. Mol. Biol. Rep. 2012, 39:1975-1987.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 1975-1987
    • Zhang, Y.1    Yu, M.2    Yu, H.3    Han, J.4    Song, C.5    Ma, R.6    Fang, J.7
  • 32
    • 84865097020 scopus 로고    scopus 로고
    • Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    • Zhu H., Xia R., Zhao B., An Y.Q., Dardick C.D., Callahan A.M., Liu Z. Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs. BMC Plant Biol. 2012, 12:149-185.
    • (2012) BMC Plant Biol. , vol.12 , pp. 149-185
    • Zhu, H.1    Xia, R.2    Zhao, B.3    An, Y.Q.4    Dardick, C.D.5    Callahan, A.M.6    Liu, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.